#------------------------------------------------------------------------------
#$Date: 2016-03-26 22:05:20 +0200 (Sat, 26 Mar 2016) $
#$Revision: 180489 $
#$URL: svn://www.crystallography.net/cod/cif/7/21/58/7215880.cif $
#------------------------------------------------------------------------------
#
# This file is available in the Crystallography Open Database (COD),
# http://www.crystallography.net/
#
# All data on this site have been placed in the public domain by the
# contributors.
#
data_7215880
loop_
_publ_author_name
'Martins, Felipe Terra'
'Corrêa, Rodrigo S.'
'Batista, Alzir Azevedo'
'Ellena, Javier'
_publ_section_title
;
 Quasi-enantiomeric single-nucleoside and quasi-racemic two-nucleoside
 hydrochloride salts and ruthenium complexes of cytidine and
 2′,3′-dideoxycytidine analogs unveiling the negligible
 structure-driving role of the 2′,3′-moieties
;
_journal_issue                   30
_journal_name_full               CrystEngComm
_journal_page_first              7013
_journal_paper_doi               10.1039/C4CE00678J
_journal_volume                  16
_journal_year                    2014
_chemical_absolute_configuration rmad
_chemical_compound_source        'Polymorph Screening'
_chemical_formula_moiety         'C9 H14 N3 O3, Cl'
_chemical_formula_sum            'C9 H14 Cl N3 O3'
_chemical_formula_weight         247.68
_chemical_name_common            'zalcitabine hydrochloride'
_chemical_name_systematic
;
2',3'-dideoxycytidine hydrochloride
;
_space_group_IT_number           4
_symmetry_cell_setting           monoclinic
_symmetry_Int_Tables_number      4
_symmetry_space_group_name_Hall  'P 2yb'
_symmetry_space_group_name_H-M   'P 1 21 1'
_atom_sites_solution_hydrogens   geom
_atom_sites_solution_primary     direct
_atom_sites_solution_secondary   difmap
_audit_creation_date             2008-07-31T17:12:02-00:00
_audit_creation_method           'WinGx routine CIF_UPDATE'
_cell_angle_alpha                90.00
_cell_angle_beta                 104.6393(24)
_cell_angle_gamma                90.00
_cell_formula_units_Z            2
_cell_length_a                   5.5482(2)
_cell_length_b                   12.0260(5)
_cell_length_c                   8.5725(3)
_cell_measurement_reflns_used    7633
_cell_measurement_temperature    298(2)
_cell_measurement_theta_max      23.817
_cell_measurement_theta_min      2.910
_cell_volume                     553.41(4)
_computing_cell_refinement       'HKL Scalepack (Otwinowski Minor 1997)'
_computing_data_collection       'Collect (Bruker AxS BV, 1997-2004)'
_computing_data_reduction
'HKL Denzo and Scalepack (Otwinowski Minor 1997)'
_computing_structure_refinement  'SHELxL-97 (Sheldrick, 1997)'
_diffrn_ambient_temperature      298(2)
_diffrn_measured_fraction_theta_full 0.971
_diffrn_measured_fraction_theta_max 0.971
_diffrn_measurement_device       '95mm CCD camera on κ-goniostat'
_diffrn_measurement_device_type  KappaCCD
_diffrn_measurement_method       'CCD rotation images, thick slices'
_diffrn_radiation_probe          x-ray
_diffrn_radiation_type           MoK\a
_diffrn_radiation_wavelength     0.71073
_diffrn_reflns_av_R_equivalents  0.0655
_diffrn_reflns_av_sigmaI/netI    0.0593
_diffrn_reflns_limit_h_max       6
_diffrn_reflns_limit_h_min       -6
_diffrn_reflns_limit_k_max       13
_diffrn_reflns_limit_k_min       -13
_diffrn_reflns_limit_l_max       9
_diffrn_reflns_limit_l_min       -9
_diffrn_reflns_number            4896
_diffrn_reflns_theta_full        24.85
_diffrn_reflns_theta_max         24.85
_diffrn_reflns_theta_min         3.97
_exptl_absorpt_coefficient_mu    0.342
_exptl_absorpt_correction_T_max  0.981
_exptl_absorpt_correction_T_min  0.882
_exptl_absorpt_correction_type   gaussian
_exptl_absorpt_process_details
;
P. Coppens, L. Leiserowitz, D Rabinovich, Acta Cryst.
(1965), 18, 1035-1038
;
_exptl_crystal_colour            colourless
_exptl_crystal_density_diffrn    1.486
_exptl_crystal_density_method    'not measured'
_exptl_crystal_description       prism
_exptl_crystal_F_000             260
_exptl_crystal_size_max          0.601
_exptl_crystal_size_mid          0.115
_exptl_crystal_size_min          0.056
_refine_diff_density_max         0.380
_refine_diff_density_min         -0.160
_refine_diff_density_rms         0.039
_refine_ls_abs_structure_details 'Flack H D (1983), Acta Cryst. A39, 876-881'
_refine_ls_abs_structure_Flack   0.05(9)
_refine_ls_extinction_method     none
_refine_ls_goodness_of_fit_ref   1.074
_refine_ls_hydrogen_treatment    mixed
_refine_ls_matrix_type           full
_refine_ls_number_parameters     157
_refine_ls_number_reflns         1653
_refine_ls_number_restraints     1
_refine_ls_restrained_S_all      1.073
_refine_ls_R_factor_all          0.0440
_refine_ls_R_factor_gt           0.0407
_refine_ls_shift/su_max          0.000
_refine_ls_shift/su_mean         0.000
_refine_ls_structure_factor_coef Fsqd
_refine_ls_weighting_details
'calc w=1/[σ²(Fo²)+(0.0497P)²+0.0870P] where P=(Fo²+2Fc²)/3'
_refine_ls_weighting_scheme      calc
_refine_ls_wR_factor_gt          0.1048
_refine_ls_wR_factor_ref         0.1083
_reflns_number_gt                1552
_reflns_number_total             1653
_reflns_threshold_expression     >2sigma(I)
_cod_data_source_file            c4ce00678j2.cif
_cod_data_source_block           ZalHCl_RT
_cod_depositor_comments
'Adding full bibliography for 7215880--7215884.cif.'
_cod_original_sg_symbol_H-M      P21
_cod_database_code               7215880
loop_
_symmetry_equiv_pos_as_xyz
'x, y, z'
'-x, y+1/2, -z'
loop_
_atom_site_label
_atom_site_type_symbol
_atom_site_fract_x
_atom_site_fract_y
_atom_site_fract_z
_atom_site_U_iso_or_equiv
_atom_site_adp_type
_atom_site_occupancy
_atom_site_symmetry_multiplicity
_atom_site_calc_flag
_atom_site_refinement_flags
Cl1 Cl 0.50764(14) 0.06500(7) 0.60903(10) 0.0593(3) Uani 1 1 d .
O1' O 0.4345(4) 0.2034(2) 0.1170(3) 0.0518(5) Uani 1 1 d .
N3 N -0.1506(5) 0.1691(2) 0.4205(3) 0.0441(6) Uani 1 1 d .
N1 N 0.1111(4) 0.1866(2) 0.2481(3) 0.0442(6) Uani 1 1 d .
O2 O -0.0334(4) 0.01741(17) 0.3002(3) 0.0553(6) Uani 1 1 d .
N4 N -0.3072(5) 0.3186(3) 0.5265(4) 0.0554(7) Uani 1 1 d .
C4 C -0.1651(5) 0.2803(2) 0.4386(3) 0.0422(7) Uani 1 1 d .
C6 C 0.1132(6) 0.2989(3) 0.2709(4) 0.0455(7) Uani 1 1 d .
H6 H 0.2104 0.3431 0.2218 0.055 Uiso 1 1 calc R
C1' C 0.2536(5) 0.1297(3) 0.1436(4) 0.0477(7) Uani 1 1 d .
H1' H 0.3332 0.0622 0.1969 0.057 Uiso 1 1 calc R
C4' C 0.3869(5) 0.2305(3) -0.0533(3) 0.0499(7) Uani 1 1 d .
H4' H 0.4906 0.1832 -0.1030 0.060 Uiso 1 1 calc R
C2 C -0.0241(6) 0.1180(2) 0.3217(4) 0.0420(7) Uani 1 1 d .
O5' O 0.4414(6) 0.3785(3) -0.2277(4) 0.0845(9) Uani 1 1 d .
C5 C -0.0220(5) 0.3475(3) 0.3626(4) 0.0508(8) Uani 1 1 d .
H5 H -0.0204 0.4243 0.3752 0.061 Uiso 1 1 calc R
C2' C 0.0855(6) 0.1010(3) -0.0218(4) 0.0583(9) Uani 1 1 d .
H2'y H -0.0865 0.0925 -0.0173 0.070 Uiso 1 1 calc R
H2'x H 0.1399 0.0334 -0.0642 0.070 Uiso 1 1 calc R
C3' C 0.1172(6) 0.2020(3) -0.1230(4) 0.0606(9) Uani 1 1 d .
H3'y H 0.0847 0.1833 -0.2365 0.073 Uiso 1 1 calc R
H3'x H 0.0088 0.2626 -0.1095 0.073 Uiso 1 1 calc R
C5' C 0.4587(8) 0.3507(3) -0.0659(5) 0.0667(9) Uani 1 1 d .
H5'x H 0.3491 0.3983 -0.0235 0.080 Uiso 1 1 calc R
H5'y H 0.6280 0.3626 -0.0021 0.080 Uiso 1 1 calc R
H5'O H 0.257(8) 0.417(5) -0.311(6) 0.100 Uiso 1 1 d .
H4Nx H -0.412(8) 0.269(5) 0.560(6) 0.080 Uiso 1 1 d .
H4Ny H -0.349(8) 0.397(4) 0.516(5) 0.080 Uiso 1 1 d .
H3 H -0.227(8) 0.125(4) 0.471(6) 0.080 Uiso 1 1 d .
loop_
_atom_site_aniso_label
_atom_site_aniso_U_11
_atom_site_aniso_U_22
_atom_site_aniso_U_33
_atom_site_aniso_U_23
_atom_site_aniso_U_13
_atom_site_aniso_U_12
Cl1 0.0663(5) 0.0515(5) 0.0659(5) -0.0068(4) 0.0272(3) -0.0128(4)
O1' 0.0489(10) 0.0620(14) 0.0436(11) 0.0077(10) 0.0098(8) -0.0001(10)
N3 0.0492(13) 0.0409(14) 0.0423(13) 0.0049(10) 0.0117(11) -0.0010(11)
N1 0.0533(12) 0.0369(13) 0.0428(13) 0.0008(10) 0.0127(11) -0.0018(11)
O2 0.0670(13) 0.0399(15) 0.0604(14) -0.0002(11) 0.0185(11) -0.0025(11)
N4 0.0613(15) 0.0501(16) 0.0598(16) -0.0015(14) 0.0243(13) 0.0016(14)
C4 0.0469(14) 0.0378(16) 0.0404(15) -0.0005(11) 0.0085(12) -0.0006(12)
C6 0.0533(15) 0.0387(17) 0.0460(15) 0.0020(12) 0.0153(13) -0.0038(12)
C1' 0.0521(16) 0.0449(18) 0.0481(17) 0.0011(13) 0.0163(13) 0.0051(13)
C4' 0.0549(16) 0.0546(19) 0.0427(16) 0.0021(14) 0.0169(13) 0.0065(14)
C2 0.0478(15) 0.0334(17) 0.0443(17) 0.0012(13) 0.0108(13) -0.0016(13)
O5' 0.0942(18) 0.085(2) 0.0892(19) 0.0309(17) 0.0501(15) 0.0233(16)
C5 0.0628(17) 0.0343(16) 0.0559(18) -0.0011(13) 0.0165(15) -0.0034(13)
C2' 0.0648(19) 0.055(2) 0.056(2) -0.0089(15) 0.0165(16) -0.0044(15)
C3' 0.0581(17) 0.075(2) 0.0468(17) 0.0037(17) 0.0094(14) 0.0054(18)
C5' 0.081(2) 0.057(2) 0.067(2) 0.0117(17) 0.0277(18) 0.0030(18)
loop_
_geom_angle_atom_site_label_1
_geom_angle_atom_site_label_2
_geom_angle_atom_site_label_3
_geom_angle
C1' O1' C4' 110.5(2)
C4 N3 C2 124.6(3)
C6 N1 C2 121.1(3)
C6 N1 C1' 123.4(2)
C2 N1 C1' 115.6(2)
N4 C4 N3 118.6(3)
N4 C4 C5 124.1(3)
N3 C4 C5 117.3(3)
C5 C6 N1 121.8(3)
O1' C1' N1 108.4(2)
O1' C1' C2' 106.7(2)
N1 C1' C2' 111.5(2)
O1' C4' C3' 105.0(2)
O1' C4' C5' 107.6(3)
C3' C4' C5' 116.3(3)
O2 C2 N1 122.3(3)
O2 C2 N3 121.8(3)
N1 C2 N3 116.0(3)
C6 C5 C4 118.9(3)
C1' C2' C3' 102.5(3)
C4' C3' C2' 101.6(3)
O5' C5' C4' 110.2(4)
loop_
_geom_bond_atom_site_label_1
_geom_bond_atom_site_label_2
_geom_bond_distance
O1' C1' 1.400(4)
O1' C4' 1.454(4)
N3 C4 1.351(4)
N3 C2 1.374(4)
N1 C6 1.364(4)
N1 C2 1.372(4)
N1 C1' 1.501(4)
O2 C2 1.222(3)
N4 C4 1.304(4)
C4 C5 1.404(4)
C6 C5 1.349(4)
C1' C2' 1.527(5)
C4' C3' 1.504(4)
C4' C5' 1.511(5)
O5' C5' 1.407(5)
C2' C3' 1.528(5)
