#------------------------------------------------------------------------------
#$Date: 2022-09-13 01:36:51 +0300 (Tue, 13 Sep 2022) $
#$Revision: 277778 $
#$URL: file:///home/coder/svn-repositories/cod/cif/7/24/54/7245471.cif $
#------------------------------------------------------------------------------
#
# This file is available in the Crystallography Open Database (COD),
# http://www.crystallography.net/
#
# All data on this site have been placed in the public domain by the
# contributors.
#
data_7245471
loop_
_publ_author_name
'Orlando, Tainára'
'Lopes, Leandro C.'
'Neumann, Darlon A. M.'
'Andrade, Valquiria P.'
'Mittersteiner, Mateus'
'Rocha, Cláudia Q.'
'Zanatta, Nilo'
'Bonacorso, Helio G.'
'Martins, Marcos A. P.'
'Salbego, Paulo R. S.'
_publ_section_title
;
 Uncovering the origins of supramolecular similarity in a series of
 benzimidazole structures
;
_journal_name_full               CrystEngComm
_journal_paper_doi               10.1039/D2CE00909A
_journal_year                    2022
_chemical_formula_moiety         'C18 H11 Cl F3 N3 O2'
_chemical_formula_sum            'C18 H11 Cl F3 N3 O2'
_chemical_formula_weight         393.755
_chemical_name_common            benzimidazole
_chemical_name_systematic
;
(4-chlorophenyl)(4-hydroxy-4-(trifluoromethyl)-1,4-dihydrobenzo[4,5]imidazo[1,2-a]pyrimidin-3-yl)methanone
;
_space_group_crystal_system      monoclinic
_space_group_IT_number           14
_space_group_name_Hall           '-P 2yn'
_space_group_name_H-M_alt        'P 1 21/n 1'
_symmetry_Int_Tables_number      14
_atom_sites_solution_primary     iterative
_audit_creation_date             2022-03-18
_audit_creation_method
;
Olex2 1.5
(compiled 2021.12.09 svn.r5202d8cf for OlexSys, GUI svn.r6439)
;
_audit_update_record
;
2022-03-19 deposited with the CCDC.	2022-09-05 downloaded from the CCDC.
;
_cell_angle_alpha                90
_cell_angle_beta                 90.932(7)
_cell_angle_gamma                90
_cell_formula_units_Z            4
_cell_length_a                   6.0309(11)
_cell_length_b                   15.898(2)
_cell_length_c                   17.1914(16)
_cell_measurement_reflns_used    9889
_cell_measurement_temperature    293.15
_cell_measurement_theta_max      72.47
_cell_measurement_theta_min      2.57
_cell_volume                     1648.1(4)
_computing_cell_refinement       'BRUKER SAINT'
_computing_data_collection       'BRUKER APEX-III'
_computing_data_reduction        'BRUKER SOFTWARE'
_computing_molecular_graphics    'Olex2 1.5 (Dolomanov et al., 2009)'
_computing_publication_material  'Olex2 1.5 (Dolomanov et al., 2009)'
_computing_structure_refinement  'olex2.refine 1.5 (Bourhis et al., 2015)'
_computing_structure_solution    'olex2.solve 1.5 (Bourhis et al., 2015)'
_diffrn_ambient_temperature      293.15
_diffrn_detector                 'PHOTON 100 CMOS detector'
_diffrn_detector_area_resol_mean 10.4167
_diffrn_detector_type            Bruker
_diffrn_measured_fraction_theta_full 0.9825
_diffrn_measured_fraction_theta_max 0.9790
_diffrn_measurement_device       'KAPPA four-circle goniometer'
_diffrn_measurement_device_type  'Bruker D8 Quest'
_diffrn_measurement_method       'φ and ω scans'
_diffrn_radiation_type           'Cu K\a'
_diffrn_radiation_wavelength     1.5417800000000002
_diffrn_reflns_av_R_equivalents  0.0265
_diffrn_reflns_av_unetI/netI     0.0163
_diffrn_reflns_Laue_measured_fraction_full 0.9825
_diffrn_reflns_Laue_measured_fraction_max 0.9790
_diffrn_reflns_limit_h_max       7
_diffrn_reflns_limit_h_min       -7
_diffrn_reflns_limit_k_max       19
_diffrn_reflns_limit_k_min       -19
_diffrn_reflns_limit_l_max       20
_diffrn_reflns_limit_l_min       -21
_diffrn_reflns_number            24123
_diffrn_reflns_point_group_measured_fraction_full 0.9825
_diffrn_reflns_point_group_measured_fraction_max 0.9790
_diffrn_reflns_theta_full        67.6786
_diffrn_reflns_theta_max         72.63
_diffrn_reflns_theta_min         5.57
_diffrn_source                   'fine-focus sealed tube'
_diffrn_standards_number         0
_exptl_absorpt_coefficient_mu    2.545
_exptl_absorpt_correction_T_max  0.7536
_exptl_absorpt_correction_T_min  0.6036
_exptl_absorpt_correction_type   multi-scan
_exptl_absorpt_process_details
;
SADABS-2014/5 (Bruker,2014/5) was used for absorption correction.
wR2(int) was 0.1003 before and 0.0511 after correction.
The Ratio of minimum to maximum transmission is 0.8010.
The λ/2 correction factor is Not present.
;
_exptl_crystal_colour            colourless
_exptl_crystal_colour_primary    colourless
_exptl_crystal_density_diffrn    1.587
_exptl_crystal_density_meas      ?
_exptl_crystal_density_method    'not measured'
_exptl_crystal_description       block
_exptl_crystal_F_000             804.629
_exptl_crystal_size_max          0.449
_exptl_crystal_size_mid          0.22
_exptl_crystal_size_min          0.156
_refine_diff_density_max         0.2313
_refine_diff_density_min         -0.3461
_refine_diff_density_rms         0.0430
_refine_ls_d_res_high            0.8077
_refine_ls_d_res_low             7.9491
_refine_ls_goodness_of_fit_ref   1.0470
_refine_ls_hydrogen_treatment    constr
_refine_ls_matrix_type           full
_refine_ls_number_constraints    22
_refine_ls_number_parameters     245
_refine_ls_number_reflns         3209
_refine_ls_number_restraints     0
_refine_ls_restrained_S_all      1.0470
_refine_ls_R_factor_all          0.0419
_refine_ls_R_factor_gt           0.0388
_refine_ls_shift/su_max          0.0005
_refine_ls_shift/su_mean         0.0001
_refine_ls_structure_factor_coef Fsqd
_refine_ls_weighting_details
'w=1/[σ²(Fo²)+(0.0572P)²+0.5923P] where P=(Fo²+2Fc²)/3'
_refine_ls_weighting_scheme      calc
_refine_ls_wR_factor_gt          0.1071
_refine_ls_wR_factor_ref         0.1103
_reflns_Friedel_coverage         0.0
_reflns_limit_h_max              7
_reflns_limit_h_min              -7
_reflns_limit_k_max              19
_reflns_limit_k_min              0
_reflns_limit_l_max              21
_reflns_limit_l_min              -6
_reflns_number_gt                2944
_reflns_number_total             3209
_reflns_threshold_expression     I>=2u(I)
_cod_data_source_file            d2ce00909a2.cif
_cod_data_source_block           mmq0377_0m-auto
_cod_depositor_comments
;
The following automatic conversions were performed:

data item '_exptl_crystal_density_meas' value 'none' was changed to
'?' -- the value is perceived as not measured.

Automatic conversion script
Id: cif_fix_values 7556 2019-12-06 15:28:31Z antanas 
;
_cod_original_sg_symbol_Hall     '-P 2ybc (x-z,y,z)'
_cod_database_code               7245471
_exptl_absorpt_special_details   none
_olex2_refinement_description
;
1.a Aromatic/amide H refined with riding coordinates:
 N3(H3), C15(H15), C14(H14), C5(H5), C4(H4), C3(H3a), C17(H17), C18(H18),
 C8(H8), C2(H2)
1.b Idealised tetrahedral OH refined as rotating group:
 O1(H1)
;
_olex2_submission_special_instructions 'No special instructions were received'
loop_
_space_group_symop_id
_space_group_symop_operation_xyz
1 x,y,z
2 -x+1/2,y+1/2,-z+1/2
3 -x,-y,-z
4 x-1/2,-y-1/2,z-1/2
loop_
_atom_site_label
_atom_site_type_symbol
_atom_site_fract_x
_atom_site_fract_y
_atom_site_fract_z
_atom_site_U_iso_or_equiv
_atom_site_adp_type
_atom_site_occupancy
_atom_site_refinement_flags_posn
Cl1 Cl 0.72989(11) 0.62623(4) 1.03126(3) 0.0763(2) Uani 1.000000 .
O1 O 0.21904(18) 0.36655(9) 0.60900(8) 0.0505(3) Uani 1.000000 .
H1 H 0.1544(3) 0.3915(13) 0.6437(9) 0.0758(5) Uiso 1.000000 GR
F3 F 0.4708(2) 0.28479(9) 0.72635(7) 0.0746(4) Uani 1.000000 .
F1 F 0.76146(18) 0.29737(8) 0.65731(8) 0.0650(3) Uani 1.000000 .
F2 F 0.4847(2) 0.22734(7) 0.61371(8) 0.0680(3) Uani 1.000000 .
O2 O 0.1790(2) 0.45705(12) 0.73519(8) 0.0687(4) Uani 1.000000 .
N2 N 0.5427(2) 0.38831(8) 0.54215(7) 0.0336(3) Uani 1.000000 .
N3 N 0.8130(2) 0.48560(8) 0.58570(7) 0.0362(3) Uani 1.000000 .
H3 H 0.9359(2) 0.51193(8) 0.57929(7) 0.0434(3) Uiso 1.000000 R
N1 N 0.8189(2) 0.42030(8) 0.46092(7) 0.0375(3) Uani 1.000000 .
C16 C 0.6343(3) 0.58246(12) 0.94432(10) 0.0514(4) Uani 1.000000 .
C15 C 0.7653(3) 0.52705(13) 0.90452(11) 0.0528(4) Uani 1.000000 .
H15 H 0.9047(3) 0.51245(13) 0.92412(11) 0.0633(5) Uiso 1.000000 R
C14 C 0.6885(3) 0.49307(12) 0.83503(10) 0.0475(4) Uani 1.000000 .
H14 H 0.7775(3) 0.45624(12) 0.80744(10) 0.0570(5) Uiso 1.000000 R
C13 C 0.4789(3) 0.51375(11) 0.80635(9) 0.0409(4) Uani 1.000000 .
C12 C 0.3798(3) 0.47275(12) 0.73626(10) 0.0438(4) Uani 1.000000 .
C9 C 0.5165(2) 0.45072(10) 0.66994(9) 0.0363(3) Uani 1.000000 .
C10 C 0.4453(2) 0.37756(10) 0.61842(9) 0.0358(3) Uani 1.000000 .
C6 C 0.5006(3) 0.34283(9) 0.47338(9) 0.0363(3) Uani 1.000000 .
C5 C 0.3273(3) 0.29104(11) 0.45014(10) 0.0469(4) Uani 1.000000 .
H5 H 0.2094(3) 0.27920(11) 0.48260(10) 0.0562(5) Uiso 1.000000 R
C4 C 0.3393(3) 0.25787(13) 0.37586(12) 0.0577(5) Uani 1.000000 .
H4 H 0.2261(3) 0.22282(13) 0.35790(12) 0.0692(6) Uiso 1.000000 R
C3 C 0.5162(4) 0.27546(14) 0.32719(11) 0.0599(5) Uani 1.000000 .
H3a H 0.5198(4) 0.25089(14) 0.27813(11) 0.0719(6) Uiso 1.000000 R
C17 C 0.4262(4) 0.60380(13) 0.91712(12) 0.0578(5) Uani 1.000000 .
H17 H 0.3385(4) 0.64114(13) 0.94473(12) 0.0694(6) Uiso 1.000000 R
C18 C 0.3494(3) 0.56919(13) 0.84858(10) 0.0518(4) Uani 1.000000 .
H18 H 0.2083(3) 0.58310(13) 0.83011(10) 0.0621(5) Uiso 1.000000 R
C8 C 0.6967(2) 0.49670(10) 0.65147(9) 0.0362(3) Uani 1.000000 .
H8 H 0.7433(2) 0.53836(10) 0.68600(9) 0.0434(4) Uiso 1.000000 R
C7 C 0.7338(2) 0.43229(9) 0.52950(8) 0.0329(3) Uani 1.000000 .
C11 C 0.5406(3) 0.29555(11) 0.65387(10) 0.0465(4) Uani 1.000000 .
C1 C 0.6754(3) 0.36329(10) 0.42444(9) 0.0373(3) Uani 1.000000 .
C2 C 0.6852(3) 0.32836(12) 0.35019(10) 0.0502(4) Uani 1.000000 .
H2 H 0.8021(3) 0.34041(12) 0.31737(10) 0.0602(5) Uiso 1.000000 R
loop_
_atom_type_symbol
_atom_type_scat_dispersion_real
_atom_type_scat_dispersion_imag
_atom_type_scat_Cromer_Mann_a1
_atom_type_scat_Cromer_Mann_a2
_atom_type_scat_Cromer_Mann_a3
_atom_type_scat_Cromer_Mann_a4
_atom_type_scat_Cromer_Mann_b1
_atom_type_scat_Cromer_Mann_b2
_atom_type_scat_Cromer_Mann_b3
_atom_type_scat_Cromer_Mann_b4
_atom_type_scat_Cromer_Mann_c
_atom_type_scat_source
_atom_type_scat_dispersion_source
C 0.01920 0.00962 2.31000 1.02000 1.58860 0.86500 20.84390 10.20750 0.56870
51.65120 0.21560 'International Tables Volume C Table 6.1.1.4 (pp. 500-502)'
'Henke, Gullikson and Davis, At. Data and Nucl. Data Tables, 1993, 54, 2'
Cl 0.36842 0.69938 11.46040 7.19640 6.25560 1.64550 0.01040 1.16620 18.51940
47.77840 -9.55740 'International Tables Volume C Table 6.1.1.4 (pp. 500-502)'
'Henke, Gullikson and Davis, At. Data and Nucl. Data Tables, 1993, 54, 2'
F 0.07536 0.05506 3.53920 2.64120 1.51700 1.02430 10.28250 4.29440 0.26150
26.14760 0.27760 'International Tables Volume C Table 6.1.1.4 (pp. 500-502)'
'Henke, Gullikson and Davis, At. Data and Nucl. Data Tables, 1993, 54, 2'
H 0.00000 0.00000 0.49300 0.32291 0.14019 0.04081 10.51090 26.12570 3.14236
57.79970 0.00304 'International Tables Volume C Table 6.1.1.4 (pp. 500-502)'
'Henke, Gullikson and Davis, At. Data and Nucl. Data Tables, 1993, 54, 2'
N 0.03256 0.01839 12.21260 3.13220 2.01250 1.16630 0.00570 9.89330 28.99750
0.58260 -11.52900 'International Tables Volume C Table 6.1.1.4 (pp. 500-502)'
'Henke, Gullikson and Davis, At. Data and Nucl. Data Tables, 1993, 54, 2'
O 0.05239 0.03376 3.04850 2.28680 1.54630 0.86700 13.27710 5.70110 0.32390
32.90890 0.25080 'International Tables Volume C Table 6.1.1.4 (pp. 500-502)'
'Henke, Gullikson and Davis, At. Data and Nucl. Data Tables, 1993, 54, 2'
loop_
_exptl_crystal_face_index_h
_exptl_crystal_face_index_k
_exptl_crystal_face_index_l
_exptl_crystal_face_perp_dist
0.00 -4.00 3.00 0.1040
0.00 4.00 -3.00 0.0710
1.00 4.00 3.00 0.1160
0.00 1.00 0.00 0.0170
1.00 1.00 4.00 0.1290
0.00 -4.00 -1.00 0.0780
0.00 2.00 1.00 0.0140
-1.00 1.00 -4.00 0.0950
1.00 -3.00 2.00 0.1330
0.00 -4.00 -3.00 0.0830
0.00 -1.00 -3.00 0.1010
3.00 -1.00 -2.00 0.2180
-2.00 1.00 1.00 0.0940
0.00 1.00 3.00 0.0580
loop_
_geom_angle_atom_site_label_1
_geom_angle_atom_site_label_2
_geom_angle_atom_site_label_3
_geom_angle
_geom_angle_site_symmetry_1
_geom_angle_site_symmetry_3
_geom_angle_publ_flag
C10 O1 H1 109.5 . . ?
C6 N2 C10 128.84(12) . . ?
C7 N2 C10 123.82(12) . . ?
C7 N2 C6 105.69(12) . . ?
C8 N3 H3 120.24(8) . . ?
C7 N3 H3 120.24(8) . . ?
C7 N3 C8 119.52(12) . . ?
C1 N1 C7 104.49(12) . . ?
C15 C16 Cl1 119.99(15) . . ?
C17 C16 Cl1 118.80(15) . . ?
C17 C16 C15 121.20(17) . . ?
H15 C15 C16 120.22(11) . . ?
C14 C15 C16 119.57(17) . . ?
C14 C15 H15 120.22(11) . . ?
H14 C14 C15 119.87(11) . . ?
C13 C14 C15 120.26(16) . . ?
C13 C14 H14 119.87(10) . . ?
C12 C13 C14 122.37(15) . . ?
C18 C13 C14 118.72(16) . . ?
C18 C13 C12 118.65(15) . . ?
C13 C12 O2 118.78(15) . . ?
C9 C12 O2 120.35(16) . . ?
C9 C12 C13 120.87(14) . . ?
C10 C9 C12 118.74(13) . . ?
C8 C9 C12 121.34(15) . . ?
C8 C9 C10 119.83(13) . . ?
N2 C10 O1 108.75(12) . . ?
C9 C10 O1 115.72(13) . . ?
C9 C10 N2 108.71(12) . . ?
C11 C10 O1 107.41(13) . . ?
C11 C10 N2 107.54(12) . . ?
C11 C10 C9 108.43(13) . . ?
C5 C6 N2 132.38(15) . . ?
C1 C6 N2 104.99(13) . . ?
C1 C6 C5 122.55(15) . . ?
H5 C5 C6 121.88(10) . . ?
C4 C5 C6 116.24(17) . . ?
C4 C5 H5 121.88(11) . . ?
H4 C4 C5 119.03(11) . . ?
C3 C4 C5 121.94(17) . . ?
C3 C4 H4 119.03(11) . . ?
H3a C3 C4 119.30(11) . . ?
C2 C3 C4 121.40(17) . . ?
C2 C3 H3a 119.30(11) . . ?
H17 C17 C16 120.47(11) . . ?
C18 C17 C16 119.07(17) . . ?
C18 C17 H17 120.47(11) . . ?
C17 C18 C13 121.17(17) . . ?
H18 C18 C13 119.42(10) . . ?
H18 C18 C17 119.42(11) . . ?
C9 C8 N3 123.78(14) . . ?
H8 C8 N3 118.11(8) . . ?
H8 C8 C9 118.11(9) . . ?
N3 C7 N2 119.36(13) . . ?
N1 C7 N2 114.39(13) . . ?
N1 C7 N3 126.20(13) . . ?
F1 C11 F3 106.97(15) . . ?
F2 C11 F3 107.48(14) . . ?
F2 C11 F1 106.64(16) . . ?
C10 C11 F3 110.84(15) . . ?
C10 C11 F1 111.35(13) . . ?
C10 C11 F2 113.25(14) . . ?
C6 C1 N1 110.44(13) . . ?
C2 C1 N1 129.42(15) . . ?
C2 C1 C6 120.14(15) . . ?
C1 C2 C3 117.68(17) . . ?
H2 C2 C3 121.16(11) . . ?
H2 C2 C1 121.16(10) . . ?
loop_
_geom_bond_atom_site_label_1
_geom_bond_atom_site_label_2
_geom_bond_distance
_geom_bond_site_symmetry_2
_geom_bond_publ_flag
Cl1 C16 1.7384(18) . ?
O1 H1 0.8200 . ?
O1 C10 1.3826(18) . ?
F3 C11 1.333(2) . ?
F1 C11 1.333(2) . ?
F2 C11 1.326(2) . ?
O2 C12 1.236(2) . ?
N2 C10 1.4556(18) . ?
N2 C6 1.4055(19) . ?
N2 C7 1.3684(18) . ?
N3 H3 0.8600 . ?
N3 C8 1.3517(19) . ?
N3 C7 1.3656(19) . ?
N1 C7 1.3074(19) . ?
N1 C1 1.395(2) . ?
C16 C15 1.373(3) . ?
C16 C17 1.375(3) . ?
C15 H15 0.9300 . ?
C15 C14 1.384(3) . ?
C14 H14 0.9300 . ?
C14 C13 1.389(2) . ?
C13 C12 1.487(2) . ?
C13 C18 1.390(2) . ?
C12 C9 1.460(2) . ?
C9 C10 1.520(2) . ?
C9 C8 1.352(2) . ?
C10 C11 1.546(2) . ?
C6 C5 1.384(2) . ?
C6 C1 1.398(2) . ?
C5 H5 0.9300 . ?
C5 C4 1.385(3) . ?
C4 H4 0.9300 . ?
C4 C3 1.395(3) . ?
C3 H3a 0.9300 . ?
C3 C2 1.375(3) . ?
C17 H17 0.9300 . ?
C17 C18 1.374(3) . ?
C18 H18 0.9300 . ?
C8 H8 0.9300 . ?
C1 C2 1.394(2) . ?
C2 H2 0.9300 . ?
loop_
_geom_torsion_atom_site_label_1
_geom_torsion_atom_site_label_2
_geom_torsion_atom_site_label_3
_geom_torsion_atom_site_label_4
_geom_torsion
_geom_torsion_site_symmetry_1
_geom_torsion_site_symmetry_2
_geom_torsion_site_symmetry_3
_geom_torsion_site_symmetry_4
_geom_torsion_publ_flag
Cl1 C16 C15 C14 -179.47(15) . . . . ?
Cl1 C16 C17 C18 -179.78(16) . . . . ?
O1 C10 N2 C6 -44.08(16) . . . . ?
O1 C10 N2 C7 152.73(12) . . . . ?
O1 C10 C9 C12 33.92(16) . . . . ?
O1 C10 C9 C8 -142.58(14) . . . . ?
O1 C10 C11 F3 -67.63(14) . . . . ?
O1 C10 C11 F1 173.41(13) . . . . ?
O1 C10 C11 F2 53.25(14) . . . . ?
F3 C11 C10 N2 175.47(14) . . . . ?
F3 C11 C10 C9 58.09(15) . . . . ?
F1 C11 C10 N2 56.52(15) . . . . ?
F1 C11 C10 C9 -60.87(15) . . . . ?
F2 C11 C10 N2 -63.65(15) . . . . ?
F2 C11 C10 C9 178.97(14) . . . . ?
O2 C12 C13 C14 142.27(18) . . . . ?
O2 C12 C13 C18 -31.8(2) . . . . ?
O2 C12 C9 C10 -27.1(2) . . . . ?
O2 C12 C9 C8 149.32(18) . . . . ?
N2 C10 C9 C12 156.59(12) . . . . ?
N2 C10 C9 C8 -19.91(15) . . . . ?
N2 C6 C5 C4 178.4(2) . . . . ?
N2 C6 C1 N1 -0.88(13) . . . . ?
N2 C6 C1 C2 179.94(13) . . . . ?
N2 C7 N3 C8 -2.70(16) . . . . ?
N2 C7 N1 C1 -0.47(14) . . . . ?
N3 C8 C9 C12 -171.60(15) . . . . ?
N3 C8 C9 C10 4.81(18) . . . . ?
N3 C7 N1 C1 -177.76(16) . . . . ?
N1 C1 C6 C5 176.37(13) . . . . ?
N1 C1 C2 C3 -177.6(2) . . . . ?
C16 C15 C14 C13 -1.1(2) . . . . ?
C16 C17 C18 C13 -0.5(2) . . . . ?
C15 C14 C13 C12 -173.86(17) . . . . ?
C15 C14 C13 C18 0.2(2) . . . . ?
C14 C13 C12 C9 -37.31(19) . . . . ?
C14 C13 C18 C17 0.5(2) . . . . ?
C13 C12 C9 C10 152.45(15) . . . . ?
C13 C12 C9 C8 -31.11(19) . . . . ?
C12 C9 C10 C11 -86.79(15) . . . . ?
C6 C5 C4 C3 0.1(2) . . . . ?
C6 C1 C2 C3 1.37(19) . . . . ?
C5 C4 C3 C2 -1.5(2) . . . . ?
C4 C3 C2 C1 0.7(2) . . . . ?
