#------------------------------------------------------------------------------ #$Date: 2008-01-14 00:15:36 +0200 (Mon, 14 Jan 2008) $ #$Revision: 14 $ #$URL: file:///home/coder/svn-repositories/cod/cif/1/1100806.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_1100806 _publ_section_title ; Binding of organometallic ruthenium(II) and osmium(II) complexes to an oligonucleotide: a combined mass spectometric and theoretical study. ; loop_ _publ_author_name 'Dorcier, Antoine' 'Dyson, Paul J.' 'Gossens, Christian' 'Rothlisberger, Ursula' 'Scopelliti, Rosario' _chemical_formula_moiety 'C17 H29 Cl2 N3 P Ru, 0.5(C H4 O), Cl' _chemical_formula_sum 'C17.50 H31 Cl3 N3 O0.50 P Ru' _chemical_formula_weight 529.84 loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source 'C' 'C' 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' 'H' 'H' 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' 'N' 'N' 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' 'O' 'O' 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' 'P' 'P' 0.1023 0.0942 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' 'Cl' 'Cl' 0.1484 0.1585 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' 'Ru' 'Ru' -1.2594 0.8363 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' _symmetry_cell_setting Monoclinic _symmetry_space_group_name_H-M P2(1)/c loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y+1/2, -z+1/2' '-x, -y, -z' 'x, -y-1/2, z-1/2' _cell_length_a 13.4320(13) _cell_length_b 10.5988(10) _cell_length_c 16.2393(15) _cell_angle_alpha 90.00 _cell_angle_beta 113.411(9) _cell_angle_gamma 90.00 _cell_volume 2121.6(3) _cell_formula_units_Z 4 _cell_measurement_temperature 140(2) _cell_measurement_reflns_used 5348 _cell_measurement_theta_min 2.3858 _cell_measurement_theta_max 26.8249 _exptl_crystal_description prismatic _exptl_crystal_colour red _exptl_crystal_size_max 0.16 _exptl_crystal_size_mid 0.13 _exptl_crystal_size_min 0.11 _exptl_crystal_density_meas ? _exptl_crystal_density_diffrn 1.659 _exptl_crystal_density_method 'not measured' _exptl_crystal_F_000 1084 _exptl_absorpt_coefficient_mu 1.203 _exptl_absorpt_correction_type refdelf _exptl_absorpt_process_details ; (See: Walker, N. & Stuart, D. (1983) Acta Cryst. A39, 158-166) ; _exptl_absorpt_correction_T_min 0.527 _exptl_absorpt_correction_T_max 0.852 _diffrn_ambient_temperature 140(2) _diffrn_radiation_wavelength 0.71073 _diffrn_radiation_type MoK\a _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_monochromator graphite _diffrn_measurement_device_type 'Oxford Diffraction KM4/Sapphire CCD' _diffrn_measurement_method 'phi and omega scans' _diffrn_detector_area_resol_mean ? _diffrn_standards_number ? _diffrn_standards_interval_count ? _diffrn_standards_interval_time ? _diffrn_standards_decay_% ? _diffrn_reflns_number 12048 _diffrn_reflns_av_R_equivalents 0.0738 _diffrn_reflns_av_sigmaI/netI 0.0526 _diffrn_reflns_limit_h_min -15 _diffrn_reflns_limit_h_max 12 _diffrn_reflns_limit_k_min -12 _diffrn_reflns_limit_k_max 12 _diffrn_reflns_limit_l_min -19 _diffrn_reflns_limit_l_max 19 _diffrn_reflns_theta_min 3.18 _diffrn_reflns_theta_max 25.03 _reflns_number_total 3373 _reflns_number_gt 2819 _reflns_threshold_expression >2sigma(I) _refine_ls_structure_factor_coef Fsqd _refine_ls_matrix_type full _refine_ls_weighting_scheme calc _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0779P)^2^+0.0000P] where P=(Fo^2^+2Fc^2^)/3' _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _atom_sites_solution_hydrogens geom _refine_ls_hydrogen_treatment mixed _refine_ls_extinction_method SHELXL _refine_ls_extinction_coef 0.0002(5) _refine_ls_extinction_expression 'Fc^*^=kFc[1+0.001xFc^2^\l^3^/sin(2\q)]^-1/4^' _refine_ls_number_reflns 3373 _refine_ls_number_parameters 239 _refine_ls_number_restraints 0 _refine_ls_R_factor_all 0.0513 _refine_ls_R_factor_gt 0.0426 _refine_ls_wR_factor_ref 0.1147 _refine_ls_wR_factor_gt 0.1101 _refine_ls_goodness_of_fit_ref 1.022 _refine_ls_restrained_S_all 1.022 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_symmetry_multiplicity _atom_site_calc_flag _atom_site_refinement_flags _atom_site_disorder_assembly _atom_site_disorder_group Ru1 Ru 0.16735(2) 0.05648(3) 0.35285(2) 0.01820(16) Uani 1 1 d . . . Cl1 Cl 0.17994(9) -0.15280(10) 0.30298(7) 0.0300(3) Uani 1 1 d . . . Cl2 Cl -0.00231(8) -0.00577(11) 0.35866(8) 0.0301(3) Uani 1 1 d . . . P1 P 0.24332(8) -0.04294(10) 0.48779(7) 0.0191(3) Uani 1 1 d . . . N1 N 0.3043(3) -0.0363(3) 0.6718(2) 0.0264(9) Uani 1 1 d . . . N2 N 0.2544(3) -0.2410(3) 0.5972(3) 0.0299(9) Uani 1 1 d . . . N3 N 0.4256(3) -0.1434(4) 0.6149(2) 0.0288(9) Uani 1 1 d . . . C1 C 0.2464(3) 0.0388(4) 0.5870(3) 0.0213(10) Uani 1 1 d . . . H1A H 0.2833 0.1211 0.5922 0.026 Uiso 1 1 calc R . . H1B H 0.1711 0.0557 0.5804 0.026 Uiso 1 1 calc R . . C2 C 0.1904(4) -0.1936(4) 0.5070(3) 0.0307(11) Uani 1 1 d . . . H2A H 0.1140 -0.1829 0.4994 0.037 Uiso 1 1 calc R . . H2B H 0.1921 -0.2558 0.4621 0.037 Uiso 1 1 calc R . . C3 C 0.3870(3) -0.0817(4) 0.5268(3) 0.0266(10) Uani 1 1 d . . . H3A H 0.3986 -0.1385 0.4830 0.032 Uiso 1 1 calc R . . H3B H 0.4292 -0.0036 0.5311 0.032 Uiso 1 1 calc R . . C4 C 0.2482(4) -0.1631(4) 0.6657(3) 0.0318(11) Uani 1 1 d . . . H4A H 0.2821 -0.2074 0.7240 0.038 Uiso 1 1 calc R . . H4B H 0.1709 -0.1484 0.6541 0.038 Uiso 1 1 calc R . . C5 C 0.3675(4) -0.2606(4) 0.6121(3) 0.0333(11) Uani 1 1 d . . . H5A H 0.3708 -0.3146 0.5635 0.040 Uiso 1 1 calc R . . H5B H 0.4043 -0.3062 0.6695 0.040 Uiso 1 1 calc R . . C6 C 0.4219(3) -0.0634(4) 0.6830(3) 0.0277(11) Uani 1 1 d . . . H6A H 0.4583 0.0172 0.6816 0.033 Uiso 1 1 calc R . . H6B H 0.4619 -0.1033 0.7422 0.033 Uiso 1 1 calc R . . C7 C 0.3051(4) 0.0356(5) 0.7502(3) 0.0420(14) Uani 1 1 d . . . H7A H 0.2304 0.0520 0.7431 0.063 Uiso 1 1 calc R . . H7B H 0.3430 0.1159 0.7543 0.063 Uiso 1 1 calc R . . H7C H 0.3426 -0.0136 0.8050 0.063 Uiso 1 1 calc R . . C8 C 0.2297(4) 0.1236(4) 0.2528(3) 0.0296(11) Uani 1 1 d . . . C9 C 0.1242(4) 0.1700(4) 0.2274(3) 0.0322(12) Uani 1 1 d . . . H9 H 0.0722 0.1574 0.1679 0.039 Uiso 1 1 calc R . . C10 C 0.0954(4) 0.2352(4) 0.2898(3) 0.0283(10) Uani 1 1 d . . . H10 H 0.0224 0.2623 0.2726 0.034 Uiso 1 1 calc R . . C11 C 0.1711(4) 0.2615(4) 0.3769(3) 0.0263(10) Uani 1 1 d . . . C12 C 0.2759(3) 0.2141(4) 0.4008(3) 0.0267(10) Uani 1 1 d . . . H12 H 0.3282 0.2279 0.4600 0.032 Uiso 1 1 calc R . . C13 C 0.3059(3) 0.1475(4) 0.3407(3) 0.0284(11) Uani 1 1 d . . . H13 H 0.3782 0.1178 0.3590 0.034 Uiso 1 1 calc R . . C14 C 0.2626(5) 0.0482(5) 0.1897(4) 0.0480(15) Uani 1 1 d . . . H14A H 0.1981 0.0101 0.1435 0.072 Uiso 1 1 calc R . . H14B H 0.3130 -0.0184 0.2231 0.072 Uiso 1 1 calc R . . H14C H 0.2981 0.1036 0.1613 0.072 Uiso 1 1 calc R . . C15 C 0.1464(4) 0.3423(4) 0.4438(3) 0.0337(11) Uani 1 1 d . . . H15 H 0.2040 0.3255 0.5047 0.040 Uiso 1 1 calc R . . C16 C 0.1552(5) 0.4796(5) 0.4213(4) 0.0502(15) Uani 1 1 d . . . H16A H 0.2277 0.4957 0.4227 0.075 Uiso 1 1 calc R . . H16B H 0.1431 0.5336 0.4654 0.075 Uiso 1 1 calc R . . H16C H 0.1005 0.4982 0.3612 0.075 Uiso 1 1 calc R . . C17 C 0.0395(4) 0.3142(5) 0.4474(4) 0.0502(15) Uani 1 1 d . . . H17A H -0.0187 0.3317 0.3887 0.075 Uiso 1 1 calc R . . H17B H 0.0300 0.3672 0.4931 0.075 Uiso 1 1 calc R . . H17C H 0.0369 0.2251 0.4626 0.075 Uiso 1 1 calc R . . Cl3 Cl 0.47269(12) 0.23843(13) 0.62974(8) 0.0522(4) Uani 1 1 d . . . O1 O 0.5907(7) 0.3987(8) 0.5531(6) 0.063(2) Uani 0.50 1 d P A -1 H1 H 0.5593 0.3379 0.5659 0.095 Uiso 0.50 1 calc PR A -1 C18 C 0.5143(16) 0.4813(16) 0.4977(16) 0.063(2) Uani 0.50 1 d P A -1 H18A H 0.5273 0.5656 0.5247 0.095 Uiso 0.50 1 calc PR A -1 H18B H 0.4416 0.4526 0.4897 0.095 Uiso 0.50 1 calc PR A -1 H18C H 0.5195 0.4845 0.4392 0.095 Uiso 0.50 1 calc PR A -1 loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 Ru1 0.0179(2) 0.0215(2) 0.0165(2) -0.00085(13) 0.00816(15) -0.00038(13) Cl1 0.0371(6) 0.0267(6) 0.0313(6) -0.0094(4) 0.0188(5) -0.0021(5) Cl2 0.0209(5) 0.0313(6) 0.0416(6) 0.0013(5) 0.0161(5) -0.0004(4) P1 0.0192(6) 0.0210(6) 0.0187(5) 0.0003(4) 0.0093(5) -0.0012(4) N1 0.0274(19) 0.034(2) 0.0193(18) 0.0063(16) 0.0111(16) 0.0020(16) N2 0.032(2) 0.030(2) 0.031(2) 0.0121(17) 0.0166(18) 0.0019(16) N3 0.0233(18) 0.037(2) 0.028(2) 0.0091(17) 0.0116(16) 0.0074(16) C1 0.023(2) 0.024(2) 0.019(2) 0.0082(17) 0.0108(19) 0.0032(17) C2 0.032(2) 0.029(2) 0.031(2) 0.002(2) 0.012(2) -0.006(2) C3 0.025(2) 0.035(3) 0.026(2) 0.0046(19) 0.017(2) 0.0043(19) C4 0.032(2) 0.037(3) 0.032(2) 0.015(2) 0.019(2) 0.001(2) C5 0.039(3) 0.028(2) 0.039(3) 0.013(2) 0.022(2) 0.008(2) C6 0.019(2) 0.042(3) 0.020(2) 0.0104(19) 0.0053(19) 0.0011(19) C7 0.049(3) 0.061(4) 0.019(2) -0.003(2) 0.016(2) 0.004(3) C8 0.043(3) 0.028(2) 0.031(2) 0.000(2) 0.028(2) -0.002(2) C9 0.036(3) 0.033(3) 0.021(2) 0.0047(19) 0.005(2) -0.001(2) C10 0.029(2) 0.027(2) 0.033(2) 0.006(2) 0.017(2) 0.0061(19) C11 0.037(3) 0.021(2) 0.026(2) 0.0055(18) 0.019(2) -0.0027(19) C12 0.028(2) 0.025(2) 0.024(2) 0.0045(19) 0.008(2) -0.0115(19) C13 0.022(2) 0.028(2) 0.042(3) 0.009(2) 0.019(2) 0.0001(18) C14 0.065(4) 0.051(3) 0.050(3) -0.004(3) 0.046(3) -0.002(3) C15 0.045(3) 0.025(2) 0.033(2) -0.005(2) 0.018(2) 0.001(2) C16 0.077(4) 0.024(3) 0.070(4) -0.007(3) 0.051(4) -0.004(3) C17 0.051(3) 0.050(3) 0.066(4) -0.022(3) 0.041(3) -0.006(3) Cl3 0.0665(9) 0.0457(8) 0.0309(6) -0.0076(5) 0.0051(6) -0.0219(7) O1 0.081(6) 0.060(5) 0.065(4) 0.000(4) 0.046(4) 0.000(4) C18 0.081(6) 0.060(5) 0.065(4) 0.000(4) 0.046(4) 0.000(4)