#------------------------------------------------------------------------------ #$Date: 2016-02-18 17:37:37 +0200 (Thu, 18 Feb 2016) $ #$Revision: 176729 $ #$URL: file:///home/coder/svn-repositories/cod/cif/1/50/25/1502500.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_1502500 loop_ _publ_author_name 'Fu, Peng' 'Liu, Peipei' 'Li, Xia' 'Wang, Yi' 'Wang, Shuxia' 'Hong, Kui' 'Zhu, Weiming' _publ_section_title ; Cyclic bipyridine glycosides from the marine-derived actinomycete Actinoalloteichus cyanogriseus WH1-2216-6. ; _journal_issue 22 _journal_name_full 'Organic letters' _journal_page_first 5948 _journal_page_last 5951 _journal_paper_doi 10.1021/ol202245s _journal_volume 13 _journal_year 2011 _chemical_absolute_configuration ad _chemical_formula_moiety 'C19 H21 N3 O7' _chemical_formula_sum 'C19 H21 N3 O7' _chemical_formula_weight 403.39 _chemical_name_systematic ; ? ; _space_group_IT_number 19 _symmetry_cell_setting orthorhombic _symmetry_space_group_name_Hall 'P 2ac 2ab' _symmetry_space_group_name_H-M 'P 21 21 21' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 90.00 _cell_angle_beta 90.00 _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 7.13190(10) _cell_length_b 10.27060(10) _cell_length_c 24.8328(2) _cell_measurement_reflns_used 14141 _cell_measurement_temperature 100(2) _cell_measurement_theta_max 71.2289 _cell_measurement_theta_min 4.3011 _cell_volume 1818.98(3) _computing_cell_refinement 'CrysAlis PRO' _computing_data_collection 'CrysAlis PRO' _computing_data_reduction 'CrysAlis PRO' _computing_molecular_graphics SHELXTL _computing_publication_material SHELXTL _computing_structure_refinement SHELXTL _computing_structure_solution 'SHELXTL (Bruker, 2005)' _diffrn_ambient_temperature 100(2) _diffrn_detector_area_resol_mean 8.2417 _diffrn_measured_fraction_theta_full 0.996 _diffrn_measured_fraction_theta_max 0.996 _diffrn_measurement_device_type 'Xcalibur, Onyx, Nova' _diffrn_measurement_method '\w scans' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type CuK\a _diffrn_radiation_wavelength 1.54178 _diffrn_reflns_av_R_equivalents 0.0235 _diffrn_reflns_av_sigmaI/netI 0.0154 _diffrn_reflns_limit_h_max 8 _diffrn_reflns_limit_h_min -8 _diffrn_reflns_limit_k_max 12 _diffrn_reflns_limit_k_min -12 _diffrn_reflns_limit_l_max 28 _diffrn_reflns_limit_l_min -30 _diffrn_reflns_number 17830 _diffrn_reflns_theta_full 71.36 _diffrn_reflns_theta_max 71.36 _diffrn_reflns_theta_min 6.87 _exptl_absorpt_coefficient_mu 0.961 _exptl_absorpt_correction_T_max 0.9100 _exptl_absorpt_correction_T_min 0.7615 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details ; CrysAlis PRO (Oxford Diffraction, 2010) ; _exptl_crystal_colour colorless _exptl_crystal_density_diffrn 1.473 _exptl_crystal_density_method 'not measured' _exptl_crystal_description block _exptl_crystal_F_000 848 _exptl_crystal_size_max 0.30 _exptl_crystal_size_mid 0.30 _exptl_crystal_size_min 0.10 _refine_diff_density_max 0.369 _refine_diff_density_min -0.244 _refine_diff_density_rms 0.040 _refine_ls_abs_structure_details 'Flack H D (1983), Acta Cryst. A39, 876-881' _refine_ls_abs_structure_Flack 0.03(13) _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.075 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 267 _refine_ls_number_reflns 3540 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.075 _refine_ls_R_factor_all 0.0295 _refine_ls_R_factor_gt 0.0282 _refine_ls_shift/su_max 0.002 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0426P)^2^+0.4414P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.0733 _refine_ls_wR_factor_ref 0.0747 _reflns_number_gt 3447 _reflns_number_total 3540 _reflns_threshold_expression >2sigma(I) _cod_data_source_file ol202245s_si_002.cif _cod_data_source_block zwm30 _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Orthorhombic' changed to 'orthorhombic' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_values 1715 2011-07-08 13:25:40Z adriana ; _cod_original_sg_symbol_H-M P2(1)2(1)2(1) _cod_database_code 1502500 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x+1/2, -y, z+1/2' '-x, y+1/2, -z+1/2' 'x+1/2, -y+1/2, -z' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_symmetry_multiplicity _atom_site_calc_flag _atom_site_refinement_flags O1 O 0.18288(14) 0.11623(10) 0.78447(4) 0.0196(2) Uani 1 1 d . C2 C -0.0156(2) 0.12628(14) 0.77198(6) 0.0198(3) Uani 1 1 d . H2 H -0.0591 0.2169 0.7799 0.024 Uiso 1 1 calc R C3 C -0.12692(19) 0.03041(14) 0.80677(6) 0.0176(3) Uani 1 1 d . H3 H -0.0858 -0.0608 0.7990 0.021 Uiso 1 1 calc R O3A O -0.32194(14) 0.04415(10) 0.79548(4) 0.0213(2) Uani 1 1 d . C4 C -0.09159(19) 0.06264(13) 0.86591(5) 0.0156(3) Uani 1 1 d . H4 H -0.1298 0.1549 0.8725 0.019 Uiso 1 1 calc R C4A C 0.1189(2) 0.05040(13) 0.87639(5) 0.0165(3) Uani 1 1 d . O4B O -0.19443(14) -0.01895(9) 0.90122(4) 0.0178(2) Uani 1 1 d . H4B H -0.2584 0.0271 0.9223 0.027 Uiso 1 1 calc R O4C O 0.16480(14) -0.07969(9) 0.86951(4) 0.0175(2) Uani 1 1 d . O5 O 0.16235(14) 0.08447(9) 0.93127(4) 0.0176(2) Uani 1 1 d . C5A C 0.15636(19) 0.21458(13) 0.94375(5) 0.0151(3) Uani 1 1 d . C6 C 0.14635(18) 0.25703(14) 0.99735(6) 0.0154(3) Uani 1 1 d . N7 N 0.13823(16) 0.38578(11) 1.00883(5) 0.0157(2) Uani 1 1 d . C8 C 0.13113(19) 0.47184(13) 0.96818(6) 0.0168(3) Uani 1 1 d . C9 C 0.1469(2) 0.43695(14) 0.91438(5) 0.0174(3) Uani 1 1 d . H9 H 0.1460 0.5009 0.8868 0.021 Uiso 1 1 calc R C9A C 0.1637(2) 0.30735(14) 0.90239(6) 0.0170(3) Uani 1 1 d . O10 O 0.18394(16) 0.27316(9) 0.84939(4) 0.0196(2) Uani 1 1 d . C10A C 0.2282(2) 0.13926(14) 0.83800(6) 0.0185(3) Uani 1 1 d . H10A H 0.3657 0.1250 0.8433 0.022 Uiso 1 1 calc R C11 C -0.0338(2) 0.10071(17) 0.71207(6) 0.0264(3) Uani 1 1 d . H11A H 0.0401 0.1650 0.6921 0.040 Uiso 1 1 calc R H11B H -0.1659 0.1075 0.7015 0.040 Uiso 1 1 calc R H11C H 0.0124 0.0131 0.7039 0.040 Uiso 1 1 calc R C12 C 0.0986(2) 0.60807(14) 0.98387(6) 0.0181(3) Uani 1 1 d . H12 H 0.1252 0.6374 1.0193 0.022 Uiso 1 1 calc R N13 N 0.03338(19) 0.68595(12) 0.94823(5) 0.0229(3) Uani 1 1 d . O13A O -0.00077(17) 0.80748(10) 0.97088(4) 0.0255(2) Uani 1 1 d . H13A H -0.0417 0.8582 0.9471 0.038 Uiso 1 1 calc R C14 C -0.4014(2) -0.06854(17) 0.77071(7) 0.0275(3) Uani 1 1 d . H14A H -0.3426 -0.0825 0.7355 0.041 Uiso 1 1 calc R H14B H -0.5366 -0.0557 0.7660 0.041 Uiso 1 1 calc R H14C H -0.3795 -0.1447 0.7936 0.041 Uiso 1 1 calc R C15 C 0.3435(2) -0.12169(15) 0.89001(6) 0.0237(3) Uani 1 1 d . H15A H 0.4398 -0.0578 0.8803 0.036 Uiso 1 1 calc R H15B H 0.3756 -0.2064 0.8744 0.036 Uiso 1 1 calc R H15C H 0.3368 -0.1295 0.9293 0.036 Uiso 1 1 calc R N1' N 0.11757(17) 0.22770(11) 1.09305(5) 0.0184(2) Uani 1 1 d . C2' C 0.13989(19) 0.16768(13) 1.04518(5) 0.0153(3) Uani 1 1 d . C3' C 0.1549(2) 0.03279(14) 1.04165(6) 0.0210(3) Uani 1 1 d . H3' H 0.1728 -0.0079 1.0077 0.025 Uiso 1 1 calc R C4' C 0.1434(2) -0.04208(14) 1.08824(6) 0.0234(3) Uani 1 1 d . H4' H 0.1512 -0.1343 1.0863 0.028 Uiso 1 1 calc R C5' C 0.1207(2) 0.01872(14) 1.13716(6) 0.0200(3) Uani 1 1 d . H5' H 0.1123 -0.0299 1.1696 0.024 Uiso 1 1 calc R C6' C 0.1104(2) 0.15365(14) 1.13742(6) 0.0195(3) Uani 1 1 d . H6' H 0.0974 0.1962 1.1712 0.023 Uiso 1 1 calc R loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 O1 0.0188(5) 0.0262(5) 0.0139(5) -0.0031(4) 0.0007(4) 0.0000(4) C2 0.0204(7) 0.0249(7) 0.0142(6) -0.0021(5) -0.0017(5) 0.0023(6) C3 0.0160(7) 0.0195(6) 0.0172(7) -0.0044(5) -0.0019(5) 0.0033(6) O3A 0.0161(5) 0.0264(5) 0.0213(5) -0.0058(4) -0.0041(4) 0.0030(4) C4 0.0176(7) 0.0156(6) 0.0137(6) -0.0008(5) 0.0008(5) 0.0012(5) C4A 0.0203(7) 0.0166(6) 0.0125(6) -0.0012(5) -0.0011(5) 0.0006(5) O4B 0.0187(5) 0.0171(4) 0.0176(5) -0.0008(4) 0.0026(4) 0.0001(4) O4C 0.0165(5) 0.0164(5) 0.0197(5) -0.0020(4) -0.0031(4) 0.0031(4) O5 0.0230(5) 0.0161(5) 0.0136(4) -0.0011(4) -0.0027(4) -0.0004(4) C5A 0.0140(6) 0.0145(6) 0.0168(6) 0.0006(5) -0.0015(5) -0.0018(5) C6 0.0130(6) 0.0157(6) 0.0173(6) 0.0006(5) -0.0009(5) -0.0005(5) N7 0.0156(5) 0.0162(5) 0.0153(5) 0.0009(4) -0.0001(4) -0.0008(5) C8 0.0157(7) 0.0167(7) 0.0180(7) 0.0026(5) -0.0010(5) -0.0012(5) C9 0.0191(7) 0.0180(6) 0.0152(6) 0.0046(5) -0.0013(5) -0.0016(6) C9A 0.0153(6) 0.0216(7) 0.0141(6) 0.0009(5) 0.0001(5) -0.0020(6) O10 0.0284(5) 0.0184(5) 0.0122(5) -0.0001(4) 0.0004(4) -0.0011(4) C10A 0.0211(7) 0.0198(7) 0.0147(7) -0.0018(5) -0.0005(5) -0.0007(6) C11 0.0282(8) 0.0357(8) 0.0153(7) -0.0018(6) -0.0013(6) 0.0000(7) C12 0.0187(7) 0.0176(7) 0.0181(7) 0.0018(5) 0.0010(5) -0.0014(6) N13 0.0238(7) 0.0161(6) 0.0288(7) 0.0006(5) 0.0014(5) -0.0010(5) O13A 0.0331(6) 0.0169(5) 0.0264(5) 0.0009(4) 0.0006(5) 0.0042(5) C14 0.0211(7) 0.0367(9) 0.0248(7) -0.0106(7) -0.0033(6) -0.0025(7) C15 0.0175(7) 0.0265(7) 0.0271(8) -0.0005(6) -0.0033(6) 0.0058(6) N1' 0.0215(6) 0.0178(6) 0.0158(6) -0.0006(5) -0.0010(5) -0.0031(5) C2' 0.0129(6) 0.0198(7) 0.0134(6) 0.0022(5) -0.0013(5) -0.0019(5) C3' 0.0277(8) 0.0179(7) 0.0174(7) 0.0000(5) 0.0022(6) 0.0011(6) C4' 0.0304(8) 0.0166(7) 0.0231(7) 0.0028(6) 0.0028(6) 0.0029(6) C5' 0.0197(7) 0.0223(7) 0.0180(7) 0.0063(5) 0.0013(5) -0.0002(6) C6' 0.0216(7) 0.0229(7) 0.0139(7) 0.0007(5) -0.0014(5) -0.0031(6) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0181 0.0091 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0492 0.0322 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0311 0.0180 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle C10A O1 C2 114.80(11) O1 C2 C11 106.31(11) O1 C2 C3 109.81(11) C11 C2 C3 113.43(12) O1 C2 H2 109.1 C11 C2 H2 109.1 C3 C2 H2 109.1 O3A C3 C4 109.20(11) O3A C3 C2 109.33(11) C4 C3 C2 108.53(11) O3A C3 H3 109.9 C4 C3 H3 109.9 C2 C3 H3 109.9 C3 O3A C14 113.05(11) O4B C4 C3 112.44(11) O4B C4 C4A 110.74(11) C3 C4 C4A 107.95(11) O4B C4 H4 108.5 C3 C4 H4 108.5 C4A C4 H4 108.5 O4C C4A O5 107.44(11) O4C C4A C4 106.88(11) O5 C4A C4 110.65(11) O4C C4A C10A 112.14(11) O5 C4A C10A 109.52(11) C4 C4A C10A 110.17(11) C4 O4B H4B 109.5 C4A O4C C15 117.06(11) C5A O5 C4A 116.32(10) O5 C5A C9A 119.68(12) O5 C5A C6 121.24(12) C9A C5A C6 119.07(12) N7 C6 C5A 120.37(12) N7 C6 C2' 115.40(12) C5A C6 C2' 124.21(12) C8 N7 C6 119.10(12) N7 C8 C9 123.42(13) N7 C8 C12 115.67(12) C9 C8 C12 120.88(12) C9A C9 C8 117.86(12) C9A C9 H9 121.1 C8 C9 H9 121.1 C9 C9A O10 117.86(12) C9 C9A C5A 119.88(13) O10 C9A C5A 122.25(12) C9A O10 C10A 117.20(11) O1 C10A O10 107.45(11) O1 C10A C4A 112.05(11) O10 C10A C4A 109.56(11) O1 C10A H10A 109.2 O10 C10A H10A 109.2 C4A C10A H10A 109.2 C2 C11 H11A 109.5 C2 C11 H11B 109.5 H11A C11 H11B 109.5 C2 C11 H11C 109.5 H11A C11 H11C 109.5 H11B C11 H11C 109.5 N13 C12 C8 117.94(13) N13 C12 H12 121.0 C8 C12 H12 121.0 C12 N13 O13A 110.17(12) N13 O13A H13A 109.5 O3A C14 H14A 109.5 O3A C14 H14B 109.5 H14A C14 H14B 109.5 O3A C14 H14C 109.5 H14A C14 H14C 109.5 H14B C14 H14C 109.5 O4C C15 H15A 109.5 O4C C15 H15B 109.5 H15A C15 H15B 109.5 O4C C15 H15C 109.5 H15A C15 H15C 109.5 H15B C15 H15C 109.5 C6' N1' C2' 118.03(12) N1' C2' C3' 121.29(13) N1' C2' C6 114.94(12) C3' C2' C6 123.78(13) C4' C3' C2' 119.54(13) C4' C3' H3' 120.2 C2' C3' H3' 120.2 C5' C4' C3' 119.36(13) C5' C4' H4' 120.3 C3' C4' H4' 120.3 C4' C5' C6' 117.62(14) C4' C5' H5' 121.2 C6' C5' H5' 121.2 N1' C6' C5' 124.13(14) N1' C6' H6' 117.9 C5' C6' H6' 117.9 loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance O1 C10A 1.3883(17) O1 C2 1.4528(18) C2 C11 1.5162(19) C2 C3 1.532(2) C2 H2 1.0000 C3 O3A 1.4258(17) C3 C4 1.5263(18) C3 H3 1.0000 O3A C14 1.4278(18) C4 O4B 1.4175(17) C4 C4A 1.5284(19) C4 H4 1.0000 C4A O4C 1.3862(16) C4A O5 1.4408(16) C4A C10A 1.5332(19) O4B H4B 0.8400 O4C C15 1.4386(17) O5 C5A 1.3724(16) C5A C9A 1.4019(19) C5A C6 1.4023(19) C6 N7 1.3540(18) C6 C2' 1.5017(19) N7 C8 1.3425(18) C8 C9 1.3879(19) C8 C12 1.4708(19) C9 C9A 1.369(2) C9 H9 0.9500 C9A O10 1.3698(17) O10 C10A 1.4391(17) C10A H10A 1.0000 C11 H11A 0.9800 C11 H11B 0.9800 C11 H11C 0.9800 C12 N13 1.280(2) C12 H12 0.9500 N13 O13A 1.3905(16) O13A H13A 0.8400 C14 H14A 0.9800 C14 H14B 0.9800 C14 H14C 0.9800 C15 H15A 0.9800 C15 H15B 0.9800 C15 H15C 0.9800 N1' C6' 1.3397(19) N1' C2' 1.3486(19) C2' C3' 1.3923(19) C3' C4' 1.392(2) C3' H3' 0.9500 C4' C5' 1.375(2) C4' H4' 0.9500 C5' C6' 1.388(2) C5' H5' 0.9500 C6' H6' 0.9500 loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_site_symmetry_A O4B H4B N7 0.84 2.07 2.8782(15) 162.4 4_457 O13A H13A O4B 0.84 2.02 2.8421(15) 166.4 1_565 loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion C10A O1 C2 C11 178.87(12) C10A O1 C2 C3 -58.06(15) O1 C2 C3 O3A 178.08(10) C11 C2 C3 O3A -63.14(15) O1 C2 C3 C4 59.06(14) C11 C2 C3 C4 177.84(12) C4 C3 O3A C14 -127.33(13) C2 C3 O3A C14 114.07(13) O3A C3 C4 O4B 58.96(15) C2 C3 C4 O4B 178.06(11) O3A C3 C4 C4A -178.59(11) C2 C3 C4 C4A -59.49(14) O4B C4 C4A O4C 58.02(14) C3 C4 C4A O4C -65.46(14) O4B C4 C4A O5 -58.66(14) C3 C4 C4A O5 177.85(10) O4B C4 C4A C10A -179.91(10) C3 C4 C4A C10A 56.61(14) O5 C4A O4C C15 -46.12(15) C4 C4A O4C C15 -164.91(11) C10A C4A O4C C15 74.27(15) O4C C4A O5 C5A 169.47(11) C4 C4A O5 C5A -74.19(14) C10A C4A O5 C5A 47.44(15) C4A O5 C5A C9A -18.29(18) C4A O5 C5A C6 162.85(12) O5 C5A C6 N7 -179.18(12) C9A C5A C6 N7 2.0(2) O5 C5A C6 C2' -0.5(2) C9A C5A C6 C2' -179.32(13) C5A C6 N7 C8 3.06(19) C2' C6 N7 C8 -175.78(12) C6 N7 C8 C9 -5.4(2) C6 N7 C8 C12 172.58(12) N7 C8 C9 C9A 2.4(2) C12 C8 C9 C9A -175.44(13) C8 C9 C9A O10 -178.39(12) C8 C9 C9A C5A 2.8(2) O5 C5A C9A C9 176.23(13) C6 C5A C9A C9 -4.9(2) O5 C5A C9A O10 -2.5(2) C6 C5A C9A O10 176.34(12) C9 C9A O10 C10A 171.33(13) C5A C9A O10 C10A -9.88(19) C2 O1 C10A O10 -65.02(15) C2 O1 C10A C4A 55.37(16) C9A O10 C10A O1 160.93(11) C9A O10 C10A C4A 38.97(16) O4C C4A C10A O1 64.58(15) O5 C4A C10A O1 -176.25(11) C4 C4A C10A O1 -54.33(15) O4C C4A C10A O10 -176.26(11) O5 C4A C10A O10 -57.08(14) C4 C4A C10A O10 64.84(14) N7 C8 C12 N13 -158.65(13) C9 C8 C12 N13 19.4(2) C8 C12 N13 O13A 175.86(12) C6' N1' C2' C3' 0.1(2) C6' N1' C2' C6 179.91(12) N7 C6 C2' N1' 3.11(18) C5A C6 C2' N1' -175.67(13) N7 C6 C2' C3' -177.08(14) C5A C6 C2' C3' 4.1(2) N1' C2' C3' C4' 1.1(2) C6 C2' C3' C4' -178.69(13) C2' C3' C4' C5' -1.1(2) C3' C4' C5' C6' -0.1(2) C2' N1' C6' C5' -1.4(2) C4' C5' C6' N1' 1.3(2)