#------------------------------------------------------------------------------ #$Date: 2017-10-13 02:32:00 +0300 (Fri, 13 Oct 2017) $ #$Revision: 201954 $ #$URL: file:///home/coder/svn-repositories/cod/cif/1/50/26/1502660.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_1502660 loop_ _publ_author_name 'Ivachtchenko, Alexandre V.' 'Dmitriev, Dmitri E.' 'Golovina, Elena S.' 'Kadieva, Madina G.' 'Koryakova, Angela G.' 'Kysil, Volodymyr M.' 'Mitkin, Oleg D.' 'Okun, Ilya M.' 'Tkachenko, Sergey E.' 'Vorobiev, Anton A.' _publ_contact_author ; Ilya Okun ; _publ_section_title ; (3-Phenylsulfonylcycloalkano[e and d]pyrazolo[1,5-a]pyrimidin-2-yl)amines: potent and selective antagonists of the serotonin 5-HT6 receptor. ; _journal_issue 14 _journal_name_full 'Journal of medicinal chemistry' _journal_page_first 5186 _journal_page_last 5196 _journal_paper_doi 10.1021/jm100350r _journal_volume 53 _journal_year 2010 _chemical_formula_sum 'C18 H20 N4 O2 S' _chemical_formula_weight 356.44 _chemical_name_systematic ; N,N,5-Trimethyl-3-(phenylsulfonyl)-7,8-dihydro-6H-cyclopenta[e]pyrazolo[1,5-a]pyrimidin-amine ; _space_group_IT_number 14 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-P 2yn' _symmetry_space_group_name_H-M 'P 1 21/n 1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 90.00 _cell_angle_beta 98.996(5) _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 8.7051(5) _cell_length_b 16.7415(10) _cell_length_c 11.6695(6) _cell_measurement_reflns_used 3400 _cell_measurement_temperature 100(2) _cell_measurement_theta_max 64.96 _cell_measurement_theta_min 11.30 _cell_volume 1679.75(17) _computing_cell_refinement 'Bruker SAINT' _computing_data_collection 'Bruker APEX2' _computing_data_reduction 'Bruker SAINT' _computing_molecular_graphics 'Bruker SHELXTL' _computing_publication_material 'Bruker SHELXTL' _computing_structure_refinement 'SHELXL-97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS-97 (Sheldrick, 1990)' _diffrn_ambient_temperature 100(2) _diffrn_measured_fraction_theta_full 0.979 _diffrn_measured_fraction_theta_max 0.914 _diffrn_measurement_device_type 'Bruker APEX-II CCD' _diffrn_measurement_method '\f and \w scans' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type CuK\a _diffrn_radiation_wavelength 1.54178 _diffrn_reflns_av_R_equivalents 0.0454 _diffrn_reflns_av_sigmaI/netI 0.0430 _diffrn_reflns_limit_h_max 8 _diffrn_reflns_limit_h_min -10 _diffrn_reflns_limit_k_max 19 _diffrn_reflns_limit_k_min -19 _diffrn_reflns_limit_l_max 11 _diffrn_reflns_limit_l_min -13 _diffrn_reflns_number 6592 _diffrn_reflns_theta_full 55.00 _diffrn_reflns_theta_max 65.12 _diffrn_reflns_theta_min 11.30 _exptl_absorpt_coefficient_mu 1.882 _exptl_absorpt_correction_T_max 0.8955 _exptl_absorpt_correction_T_min 0.6022 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details sadabs _exptl_crystal_colour colorless _exptl_crystal_density_diffrn 1.409 _exptl_crystal_density_method 'not measured' _exptl_crystal_description needle _exptl_crystal_F_000 752 _exptl_crystal_size_max 0.30 _exptl_crystal_size_mid 0.10 _exptl_crystal_size_min 0.06 _refine_diff_density_max 0.276 _refine_diff_density_min -0.391 _refine_diff_density_rms 0.062 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.048 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 226 _refine_ls_number_reflns 2625 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.048 _refine_ls_R_factor_all 0.0576 _refine_ls_R_factor_gt 0.0456 _refine_ls_shift/su_max 0.001 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0828P)^2^+0.1900P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.1216 _refine_ls_wR_factor_ref 0.1293 _reflns_number_gt 2148 _reflns_number_total 2625 _reflns_threshold_expression >2sigma(I) _cod_data_source_file jm100350r_si_003.cif _cod_data_source_block compound_12 _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Monoclinic' changed to 'monoclinic' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.2 from 2011-04-26. Automatic conversion script Id: cif_fix_values 1715 2011-07-08 13:25:40Z adriana ; _cod_original_cell_volume 1679.75(16) _cod_original_sg_symbol_H-M P2(1)/n _cod_database_code 1502660 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x+1/2, y+1/2, -z+1/2' '-x, -y, -z' 'x-1/2, -y-1/2, z-1/2' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_symmetry_multiplicity _atom_site_calc_flag _atom_site_refinement_flags S1 S 0.28332(7) 0.88229(3) 0.21888(5) 0.0231(2) Uani 1 1 d . O1 O 0.1365(2) 0.84629(11) 0.17372(15) 0.0337(5) Uani 1 1 d . O2 O 0.4213(2) 0.83405(11) 0.22424(15) 0.0322(5) Uani 1 1 d . N1 N 0.0821(2) 1.02980(12) 0.30105(17) 0.0223(5) Uani 1 1 d . N2 N 0.2326(2) 1.00787(11) 0.48871(16) 0.0193(4) Uani 1 1 d . N3 N 0.3381(2) 0.95613(11) 0.54737(17) 0.0209(5) Uani 1 1 d . N4 N 0.4721(2) 0.84092(12) 0.49552(17) 0.0216(5) Uani 1 1 d . C1 C 0.3062(3) 0.96679(14) 0.1318(2) 0.0213(5) Uani 1 1 d . C2 C 0.1966(3) 0.97998(16) 0.0341(2) 0.0264(6) Uani 1 1 d . H2B H 0.1096 0.9454 0.0164 0.032 Uiso 1 1 calc R C3 C 0.2152(3) 1.04414(16) -0.0375(2) 0.0294(6) Uani 1 1 d . H3B H 0.1410 1.0538 -0.1049 0.035 Uiso 1 1 calc R C4 C 0.3423(3) 1.09402(17) -0.0104(2) 0.0286(6) Uani 1 1 d . H4A H 0.3555 1.1379 -0.0595 0.034 Uiso 1 1 calc R C5 C 0.4505(3) 1.08041(16) 0.0880(2) 0.0269(6) Uani 1 1 d . H5A H 0.5372 1.1152 0.1061 0.032 Uiso 1 1 calc R C6 C 0.4334(3) 1.01679(15) 0.1599(2) 0.0244(6) Uani 1 1 d . H6A H 0.5074 1.0074 0.2275 0.029 Uiso 1 1 calc R C7 C 0.3655(3) 0.90331(15) 0.4658(2) 0.0210(5) Uani 1 1 d . C8 C 0.2769(3) 0.92049(14) 0.3552(2) 0.0210(5) Uani 1 1 d . C9 C 0.1875(3) 0.98790(14) 0.3730(2) 0.0202(5) Uani 1 1 d . C10 C 0.0234(3) 1.09513(15) 0.3437(2) 0.0226(5) Uani 1 1 d . C11 C 0.0714(3) 1.11938(14) 0.4593(2) 0.0219(5) Uani 1 1 d . C12 C 0.0267(3) 1.19232(15) 0.5222(2) 0.0291(6) Uani 1 1 d . H12A H -0.0827 1.1891 0.5356 0.035 Uiso 1 1 calc R H12B H 0.0406 1.2416 0.4782 0.035 Uiso 1 1 calc R C13 C 0.1396(4) 1.19023(18) 0.6375(3) 0.0410(7) Uani 1 1 d . H13A H 0.0828 1.2014 0.7029 0.049 Uiso 1 1 calc R H13B H 0.2212 1.2314 0.6372 0.049 Uiso 1 1 calc R C14 C 0.2141(3) 1.10658(15) 0.6515(2) 0.0262(6) Uani 1 1 d . H14A H 0.3280 1.1098 0.6764 0.031 Uiso 1 1 calc R H14B H 0.1676 1.0737 0.7077 0.031 Uiso 1 1 calc R C15 C 0.1751(3) 1.07475(14) 0.5317(2) 0.0212(5) Uani 1 1 d . C16 C -0.0952(3) 1.14192(16) 0.2651(2) 0.0289(6) Uani 1 1 d . H16A H -0.1141 1.1165 0.1886 0.043 Uiso 1 1 calc R H16B H -0.0571 1.1964 0.2575 0.043 Uiso 1 1 calc R H16D H -0.1923 1.1436 0.2976 0.043 Uiso 1 1 calc R C17 C 0.4225(4) 0.76068(17) 0.4623(3) 0.0391(7) Uani 1 1 d . H17A H 0.3704 0.7606 0.3815 0.059 Uiso 1 1 calc R H17B H 0.3502 0.7417 0.5128 0.059 Uiso 1 1 calc R H17C H 0.5133 0.7254 0.4701 0.059 Uiso 1 1 calc R C18 C 0.5510(3) 0.84317(16) 0.6166(2) 0.0258(6) Uani 1 1 d . H18A H 0.5836 0.8980 0.6372 0.039 Uiso 1 1 calc R H18B H 0.6426 0.8083 0.6252 0.039 Uiso 1 1 calc R H18C H 0.4795 0.8246 0.6680 0.039 Uiso 1 1 calc R loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 S1 0.0302(4) 0.0186(3) 0.0202(3) -0.0018(2) 0.0029(3) 0.0001(2) O1 0.0440(12) 0.0266(10) 0.0286(9) -0.0014(8) -0.0005(9) -0.0090(9) O2 0.0451(12) 0.0250(10) 0.0269(9) -0.0016(7) 0.0067(8) 0.0109(8) N1 0.0226(11) 0.0234(11) 0.0217(10) 0.0038(8) 0.0063(9) -0.0006(9) N2 0.0230(11) 0.0171(10) 0.0188(10) 0.0002(8) 0.0064(8) -0.0013(8) N3 0.0225(11) 0.0205(11) 0.0202(10) 0.0027(8) 0.0049(8) 0.0008(8) N4 0.0191(11) 0.0253(11) 0.0204(10) 0.0024(8) 0.0027(8) -0.0025(8) C1 0.0233(13) 0.0235(13) 0.0181(11) -0.0006(10) 0.0065(10) 0.0041(10) C2 0.0248(14) 0.0343(15) 0.0215(12) -0.0017(10) 0.0084(11) -0.0005(11) C3 0.0263(14) 0.0437(16) 0.0191(12) 0.0075(11) 0.0067(11) 0.0048(12) C4 0.0311(15) 0.0329(15) 0.0247(13) 0.0055(11) 0.0128(11) 0.0062(11) C5 0.0289(14) 0.0251(14) 0.0283(13) -0.0051(10) 0.0090(11) -0.0009(11) C6 0.0255(13) 0.0260(13) 0.0214(12) -0.0030(10) 0.0028(10) 0.0024(10) C7 0.0196(12) 0.0239(13) 0.0201(12) 0.0004(9) 0.0050(10) -0.0052(10) C8 0.0216(13) 0.0199(13) 0.0216(12) 0.0001(9) 0.0039(10) -0.0021(10) C9 0.0219(12) 0.0206(12) 0.0184(11) 0.0006(9) 0.0041(10) -0.0045(10) C10 0.0207(12) 0.0214(13) 0.0264(12) 0.0046(10) 0.0062(10) -0.0034(10) C11 0.0200(12) 0.0195(13) 0.0275(13) 0.0011(10) 0.0078(11) -0.0030(10) C12 0.0281(14) 0.0247(14) 0.0375(15) -0.0005(11) 0.0145(12) 0.0012(11) C13 0.0397(17) 0.0370(17) 0.0454(17) -0.0166(14) 0.0034(14) 0.0066(13) C14 0.0284(14) 0.0292(14) 0.0225(12) -0.0044(10) 0.0081(11) -0.0039(11) C15 0.0220(12) 0.0206(13) 0.0227(12) -0.0008(10) 0.0085(10) -0.0048(10) C16 0.0277(14) 0.0297(14) 0.0297(13) 0.0051(11) 0.0057(11) 0.0026(11) C17 0.0456(18) 0.0318(16) 0.0395(16) 0.0007(12) 0.0053(14) 0.0026(13) C18 0.0233(13) 0.0282(14) 0.0258(13) 0.0050(10) 0.0031(11) 0.0007(11) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0181 0.0091 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0311 0.0180 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0492 0.0322 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' S S 0.3331 0.5567 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle O1 S1 O2 117.93(12) O1 S1 C8 109.80(11) O2 S1 C8 108.38(11) O1 S1 C1 107.34(11) O2 S1 C1 107.74(11) C8 S1 C1 104.85(11) C10 N1 C9 117.3(2) C15 N2 N3 126.65(19) C15 N2 C9 119.7(2) N3 N2 C9 113.63(19) C7 N3 N2 103.96(18) C7 N4 C17 117.8(2) C7 N4 C18 114.2(2) C17 N4 C18 110.9(2) C2 C1 C6 121.4(2) C2 C1 S1 118.34(19) C6 C1 S1 120.25(19) C1 C2 C3 119.3(2) C4 C3 C2 119.6(2) C3 C4 C5 120.4(2) C6 C5 C4 120.5(2) C5 C6 C1 118.7(2) N3 C7 N4 119.8(2) N3 C7 C8 112.1(2) N4 C7 C8 128.1(2) C9 C8 C7 105.2(2) C9 C8 S1 122.26(19) C7 C8 S1 132.03(19) N1 C9 N2 123.1(2) N1 C9 C8 131.9(2) N2 C9 C8 105.0(2) N1 C10 C11 121.3(2) N1 C10 C16 118.0(2) C11 C10 C16 120.7(2) C15 C11 C10 120.4(2) C15 C11 C12 109.8(2) C10 C11 C12 129.8(2) C11 C12 C13 103.3(2) C12 C13 C14 108.3(2) C15 C14 C13 101.3(2) N2 C15 C11 118.1(2) N2 C15 C14 127.0(2) C11 C15 C14 114.8(2) loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance S1 O1 1.436(2) S1 O2 1.4405(19) S1 C8 1.723(2) S1 C1 1.772(2) N1 C10 1.336(3) N1 C9 1.341(3) N2 C15 1.355(3) N2 N3 1.366(3) N2 C9 1.387(3) N3 C7 1.348(3) N4 C7 1.404(3) N4 C17 1.445(3) N4 C18 1.472(3) C1 C2 1.385(4) C1 C6 1.386(4) C2 C3 1.386(4) C3 C4 1.383(4) C4 C5 1.386(4) C5 C6 1.378(4) C7 C8 1.426(3) C8 C9 1.404(3) C10 C11 1.408(4) C10 C16 1.491(4) C11 C15 1.360(4) C11 C12 1.507(3) C12 C13 1.537(4) C13 C14 1.541(4) C14 C15 1.485(3) loop_ _cod_related_entry_id _cod_related_entry_code _cod_related_entry_database 1 24673858 ChemSpider