#------------------------------------------------------------------------------ #$Date: 2012-03-01 14:03:23 +0200 (Thu, 01 Mar 2012) $ #$Revision: 36622 $ #$URL: file:///home/coder/svn-repositories/cod/cif/1/50/26/1502668.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_1502668 loop_ _publ_author_name 'Tan, Caiping' 'Lai, Sensen' 'Wu, Shouhai' 'Hu, Sheng' 'Zhou, Lingjun' 'Chen, Yu' 'Wang, Minxu' 'Zhu, Yiping' 'Lian, Wu' 'Peng, Wenlie' 'Ji, Liangnian' 'Xu, Anlong' _publ_section_title ; Nuclear permeable ruthenium(II) \b-carboline complexes induce autophagy to antagonize mitochondrial-mediated apoptosis. ; _journal_issue 21 _journal_name_full 'Journal of medicinal chemistry' _journal_page_first 7613 _journal_page_last 7624 _journal_volume 53 _journal_year 2010 _chemical_formula_sum 'C16 H10 N3' _chemical_formula_weight 244.27 _chemical_name_systematic ; ? ; _space_group_IT_number 14 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-P 2ybc' _symmetry_space_group_name_H-M 'P 1 21/c 1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 90.00 _cell_angle_beta 98.773(2) _cell_angle_gamma 90.00 _cell_formula_units_Z 8 _cell_length_a 15.046(2) _cell_length_b 9.8450(13) _cell_length_c 16.267(2) _cell_measurement_reflns_used 4533 _cell_measurement_temperature 173(2) _cell_measurement_theta_max 26.40 _cell_measurement_theta_min 2.077 _cell_volume 2381.4(5) _computing_cell_refinement 'Bruker SMART' _computing_data_collection 'Bruker SMART' _computing_data_reduction 'Bruker SMART' _computing_molecular_graphics 'Bruker SHELXTL' _computing_publication_material 'Bruker SHELXTL' _computing_structure_refinement 'SHELXL-97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS-97 (Sheldrick, 1990)' _diffrn_ambient_temperature 173(2) _diffrn_detector_area_resol_mean graphite _diffrn_measured_fraction_theta_full 0.994 _diffrn_measured_fraction_theta_max 0.994 _diffrn_measurement_device_type MoK\a _diffrn_measurement_method 'phi and omega scans' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0232 _diffrn_reflns_av_sigmaI/netI 0.0321 _diffrn_reflns_limit_h_max 19 _diffrn_reflns_limit_h_min -18 _diffrn_reflns_limit_k_max 12 _diffrn_reflns_limit_k_min -8 _diffrn_reflns_limit_l_max 13 _diffrn_reflns_limit_l_min -20 _diffrn_reflns_number 11939 _diffrn_reflns_theta_full 27.10 _diffrn_reflns_theta_max 27.10 _diffrn_reflns_theta_min 1.37 _diffrn_standards_decay_% 0 _diffrn_standards_interval_count 0 _diffrn_standards_interval_time 0 _diffrn_standards_number 'CCD area detector' _exptl_absorpt_coefficient_mu 0.084 _exptl_absorpt_correction_T_max 0.750 _exptl_absorpt_correction_T_min 0.558 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details 'SADABS (Sheldrick, 1996)' _exptl_crystal_colour yellow _exptl_crystal_density_diffrn 1.363 _exptl_crystal_density_method 'not measured' _exptl_crystal_description block _exptl_crystal_F_000 1016 _exptl_crystal_size_max 0.34 _exptl_crystal_size_mid 0.30 _exptl_crystal_size_min 0.28 _refine_diff_density_max 0.290 _refine_diff_density_min -0.221 _refine_diff_density_rms 0.045 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.048 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 343 _refine_ls_number_reflns 5221 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.048 _refine_ls_R_factor_all 0.0682 _refine_ls_R_factor_gt 0.0459 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0631P)^2^+0.8772P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.1179 _refine_ls_wR_factor_ref 0.1331 _reflns_number_gt 3819 _reflns_number_total 5221 _reflns_threshold_expression >2sigma(I) _[local]_cod_data_source_file jm1009296_si_002.cif _[local]_cod_data_source_block 1 _[local]_cod_cif_authors_sg_H-M P21/c _cod_database_code 1502668 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y+1/2, -z+1/2' '-x, -y, -z' 'x, -y-1/2, z-1/2' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_symmetry_multiplicity _atom_site_calc_flag _atom_site_refinement_flags N1 N 0.17067(9) 0.34985(14) 0.05128(9) 0.0301(3) Uani 1 1 d . N2 N -0.07177(9) 0.35840(14) 0.06992(9) 0.0311(3) Uani 1 1 d . N3 N 0.12558(10) 0.54836(15) 0.15623(9) 0.0334(3) Uani 1 1 d . N4 N 0.41649(9) 0.11144(15) 0.35117(9) 0.0315(3) Uani 1 1 d . N5 N 0.65381(10) 0.00054(16) 0.37091(10) 0.0378(4) Uani 1 1 d . N6 N 0.52380(10) 0.20063(16) 0.49578(10) 0.0379(4) Uani 1 1 d . C1 C 0.20433(11) 0.25463(16) 0.00142(10) 0.0292(4) Uani 1 1 d . C2 C 0.29317(12) 0.23295(18) -0.00992(11) 0.0340(4) Uani 1 1 d . H2A H 0.3407 0.2881 0.0170 0.041 Uiso 1 1 calc R C3 C 0.30925(13) 0.12794(19) -0.06192(12) 0.0381(4) Uani 1 1 d . H3A H 0.3694 0.1090 -0.0696 0.046 Uiso 1 1 calc R C4 C 0.23953(13) 0.04881(19) -0.10356(12) 0.0389(4) Uani 1 1 d . H4B H 0.2529 -0.0205 -0.1404 0.047 Uiso 1 1 calc R C5 C 0.15157(13) 0.06937(17) -0.09212(11) 0.0348(4) Uani 1 1 d . H5B H 0.1044 0.0152 -0.1206 0.042 Uiso 1 1 calc R C6 C 0.13373(11) 0.17188(17) -0.03759(10) 0.0296(4) Uani 1 1 d . C7 C 0.05321(11) 0.21845(16) -0.00810(10) 0.0286(4) Uani 1 1 d . C8 C -0.03646(11) 0.18011(17) -0.02139(11) 0.0325(4) Uani 1 1 d . H8A H -0.0567 0.1060 -0.0568 0.039 Uiso 1 1 calc R C9 C -0.09528(11) 0.25331(18) 0.01856(11) 0.0342(4) Uani 1 1 d . H9A H -0.1568 0.2276 0.0091 0.041 Uiso 1 1 calc R C10 C 0.01456(11) 0.39687(16) 0.08462(10) 0.0268(3) Uani 1 1 d . C11 C 0.07914(11) 0.32850(16) 0.04621(10) 0.0263(3) Uani 1 1 d . C12 C 0.03796(11) 0.51336(16) 0.14144(10) 0.0284(4) Uani 1 1 d . C13 C -0.02773(12) 0.58305(18) 0.17645(11) 0.0344(4) Uani 1 1 d . H13A H -0.0889 0.5557 0.1654 0.041 Uiso 1 1 calc R C14 C -0.00191(13) 0.69278(19) 0.22758(11) 0.0399(4) Uani 1 1 d . H14A H -0.0452 0.7415 0.2527 0.048 Uiso 1 1 calc R C15 C 0.08730(13) 0.7308(2) 0.24176(11) 0.0403(4) Uani 1 1 d . H15A H 0.1064 0.8066 0.2761 0.048 Uiso 1 1 calc R C16 C 0.14814(13) 0.65618(19) 0.20491(11) 0.0392(4) Uani 1 1 d . H16A H 0.2095 0.6829 0.2147 0.047 Uiso 1 1 calc R C17 C 0.35441(11) 0.07718(17) 0.28220(11) 0.0314(4) Uani 1 1 d . C18 C 0.26285(12) 0.10802(19) 0.26515(12) 0.0383(4) Uani 1 1 d . H18A H 0.2340 0.1594 0.3028 0.046 Uiso 1 1 calc R C19 C 0.21614(13) 0.0604(2) 0.19096(13) 0.0428(5) Uani 1 1 d . H19A H 0.1538 0.0802 0.1774 0.051 Uiso 1 1 calc R C20 C 0.25788(14) -0.0160(2) 0.13550(12) 0.0439(5) Uani 1 1 d . H20A H 0.2235 -0.0474 0.0852 0.053 Uiso 1 1 calc R C21 C 0.34823(13) -0.0466(2) 0.15255(12) 0.0399(4) Uani 1 1 d . H21A H 0.3764 -0.0986 0.1146 0.048 Uiso 1 1 calc R C22 C 0.39757(12) 0.00059(17) 0.22681(11) 0.0329(4) Uani 1 1 d . C23 C 0.49020(12) -0.01203(17) 0.26459(11) 0.0320(4) Uani 1 1 d . C24 C 0.56549(13) -0.07637(19) 0.24338(12) 0.0398(4) Uani 1 1 d . H24A H 0.5626 -0.1256 0.1928 0.048 Uiso 1 1 calc R C25 C 0.64466(13) -0.0664(2) 0.29814(12) 0.0428(5) Uani 1 1 d . H25A H 0.6964 -0.1099 0.2834 0.051 Uiso 1 1 calc R C26 C 0.58211(11) 0.06301(17) 0.39367(11) 0.0306(4) Uani 1 1 d . C27 C 0.49905(11) 0.05808(16) 0.34127(10) 0.0288(4) Uani 1 1 d . C28 C 0.59509(11) 0.13246(17) 0.47527(11) 0.0306(4) Uani 1 1 d . C29 C 0.67682(12) 0.12669(18) 0.52793(12) 0.0381(4) Uani 1 1 d . H29A H 0.7263 0.0793 0.5116 0.046 Uiso 1 1 calc R C30 C 0.68532(13) 0.1907(2) 0.60431(13) 0.0443(5) Uani 1 1 d . H30A H 0.7405 0.1873 0.6414 0.053 Uiso 1 1 calc R C31 C 0.61232(13) 0.2597(2) 0.62594(12) 0.0428(5) Uani 1 1 d . H31A H 0.6161 0.3044 0.6781 0.051 Uiso 1 1 calc R C32 C 0.53419(13) 0.2620(2) 0.57003(12) 0.0437(5) Uani 1 1 d . H32A H 0.4843 0.3102 0.5850 0.052 Uiso 1 1 calc R loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 N1 0.0284(7) 0.0310(7) 0.0327(7) -0.0011(6) 0.0098(6) 0.0006(6) N2 0.0288(7) 0.0326(7) 0.0327(8) 0.0022(6) 0.0074(6) 0.0007(6) N3 0.0340(8) 0.0345(8) 0.0316(8) -0.0031(6) 0.0049(6) 0.0004(6) N4 0.0266(7) 0.0345(8) 0.0341(8) -0.0009(6) 0.0067(6) -0.0007(6) N5 0.0341(8) 0.0400(9) 0.0407(9) 0.0020(7) 0.0104(7) 0.0076(7) N6 0.0316(8) 0.0454(9) 0.0378(8) -0.0077(7) 0.0085(7) -0.0031(7) C1 0.0346(9) 0.0263(8) 0.0283(8) 0.0025(7) 0.0102(7) 0.0018(7) C2 0.0325(9) 0.0344(9) 0.0376(9) 0.0008(8) 0.0131(8) -0.0020(7) C3 0.0374(10) 0.0383(10) 0.0427(10) 0.0039(8) 0.0192(8) 0.0043(8) C4 0.0482(11) 0.0326(9) 0.0394(10) -0.0040(8) 0.0178(9) 0.0049(8) C5 0.0426(10) 0.0287(9) 0.0341(9) -0.0020(7) 0.0088(8) -0.0005(8) C6 0.0334(9) 0.0265(8) 0.0298(8) 0.0022(7) 0.0080(7) 0.0006(7) C7 0.0327(9) 0.0261(8) 0.0277(8) 0.0034(7) 0.0066(7) 0.0019(7) C8 0.0332(9) 0.0288(9) 0.0350(9) -0.0019(7) 0.0033(7) -0.0032(7) C9 0.0275(9) 0.0353(9) 0.0394(10) 0.0018(8) 0.0042(7) -0.0041(7) C10 0.0287(8) 0.0267(8) 0.0254(8) 0.0040(6) 0.0055(6) 0.0014(6) C11 0.0277(8) 0.0261(8) 0.0256(8) 0.0037(6) 0.0054(6) -0.0014(6) C12 0.0329(9) 0.0292(8) 0.0239(8) 0.0044(6) 0.0066(7) 0.0018(7) C13 0.0361(9) 0.0343(9) 0.0349(9) 0.0007(8) 0.0116(8) 0.0014(7) C14 0.0490(11) 0.0383(10) 0.0350(10) -0.0040(8) 0.0149(9) 0.0065(8) C15 0.0504(12) 0.0376(10) 0.0324(9) -0.0089(8) 0.0047(8) -0.0004(8) C16 0.0397(10) 0.0404(10) 0.0364(10) -0.0065(8) 0.0024(8) -0.0020(8) C17 0.0330(9) 0.0303(8) 0.0314(9) 0.0031(7) 0.0066(7) -0.0042(7) C18 0.0332(9) 0.0404(10) 0.0423(10) -0.0002(8) 0.0089(8) -0.0023(8) C19 0.0337(10) 0.0460(11) 0.0470(11) 0.0045(9) 0.0008(8) -0.0051(8) C20 0.0472(12) 0.0473(11) 0.0350(10) -0.0001(9) -0.0009(8) -0.0102(9) C21 0.0481(11) 0.0399(10) 0.0323(9) -0.0022(8) 0.0075(8) -0.0044(9) C22 0.0368(9) 0.0307(9) 0.0321(9) 0.0032(7) 0.0088(7) -0.0027(7) C23 0.0370(9) 0.0300(9) 0.0308(9) 0.0018(7) 0.0105(7) -0.0016(7) C24 0.0461(11) 0.0397(10) 0.0357(10) -0.0039(8) 0.0131(8) 0.0058(8) C25 0.0400(10) 0.0471(11) 0.0442(11) -0.0017(9) 0.0156(9) 0.0132(9) C26 0.0296(9) 0.0282(8) 0.0353(9) 0.0031(7) 0.0091(7) 0.0004(7) C27 0.0299(8) 0.0269(8) 0.0312(9) 0.0025(7) 0.0099(7) 0.0007(7) C28 0.0298(9) 0.0282(8) 0.0346(9) 0.0018(7) 0.0075(7) -0.0040(7) C29 0.0324(9) 0.0331(9) 0.0477(11) -0.0012(8) 0.0030(8) -0.0028(8) C30 0.0428(11) 0.0389(10) 0.0474(11) -0.0019(9) -0.0056(9) -0.0079(9) C31 0.0475(11) 0.0424(11) 0.0384(10) -0.0072(8) 0.0063(9) -0.0130(9) C32 0.0380(10) 0.0511(12) 0.0438(11) -0.0131(9) 0.0124(9) -0.0066(9) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle C11 N1 C1 108.17(14) C10 N2 C9 119.03(14) C16 N3 C12 117.50(15) C27 N4 C17 108.66(14) C26 N5 C25 119.29(16) C32 N6 C28 117.39(16) N1 C1 C2 128.68(16) N1 C1 C6 109.69(14) C2 C1 C6 121.59(15) C3 C2 C1 117.20(17) C3 C2 H2A 121.4 C1 C2 H2A 121.4 C2 C3 C4 121.75(17) C2 C3 H3A 119.1 C4 C3 H3A 119.1 C5 C4 C3 121.21(17) C5 C4 H4B 119.4 C3 C4 H4B 119.4 C4 C5 C6 118.23(17) C4 C5 H5B 120.9 C6 C5 H5B 120.9 C5 C6 C1 119.92(16) C5 C6 C7 133.85(16) C1 C6 C7 106.23(14) C8 C7 C11 118.38(15) C8 C7 C6 135.06(16) C11 C7 C6 106.57(14) C9 C8 C7 117.63(16) C9 C8 H8A 121.2 C7 C8 H8A 121.2 N2 C9 C8 124.68(16) N2 C9 H9A 117.7 C8 C9 H9A 117.7 N2 C10 C11 120.20(15) N2 C10 C12 117.52(14) C11 C10 C12 122.27(14) N1 C11 C10 130.59(15) N1 C11 C7 109.33(14) C10 C11 C7 120.08(15) N3 C12 C13 122.42(16) N3 C12 C10 116.23(14) C13 C12 C10 121.34(15) C14 C13 C12 118.60(17) C14 C13 H13A 120.7 C12 C13 H13A 120.7 C15 C14 C13 119.35(17) C15 C14 H14A 120.3 C13 C14 H14A 120.3 C14 C15 C16 118.42(17) C14 C15 H15A 120.8 C16 C15 H15A 120.8 N3 C16 C15 123.70(18) N3 C16 H16A 118.2 C15 C16 H16A 118.2 N4 C17 C18 129.03(16) N4 C17 C22 109.18(15) C18 C17 C22 121.79(17) C19 C18 C17 117.02(18) C19 C18 H18A 121.5 C17 C18 H18A 121.5 C18 C19 C20 121.89(18) C18 C19 H19A 119.1 C20 C19 H19A 119.1 C21 C20 C19 120.98(18) C21 C20 H20A 119.5 C19 C20 H20A 119.5 C20 C21 C22 118.63(18) C20 C21 H21A 120.7 C22 C21 H21A 120.7 C21 C22 C17 119.69(17) C21 C22 C23 133.82(17) C17 C22 C23 106.49(15) C24 C23 C27 118.16(17) C24 C23 C22 135.01(17) C27 C23 C22 106.81(15) C25 C24 C23 117.72(17) C25 C24 H24A 121.1 C23 C24 H24A 121.1 N5 C25 C24 124.53(17) N5 C25 H25A 117.7 C24 C25 H25A 117.7 N5 C26 C27 119.73(16) N5 C26 C28 117.24(16) C27 C26 C28 123.02(15) N4 C27 C26 130.57(15) N4 C27 C23 108.86(15) C26 C27 C23 120.56(15) N6 C28 C29 122.03(16) N6 C28 C26 116.78(15) C29 C28 C26 121.19(16) C30 C29 C28 119.20(18) C30 C29 H29A 120.4 C28 C29 H29A 120.4 C29 C30 C31 119.02(18) C29 C30 H30A 120.5 C31 C30 H30A 120.5 C32 C31 C30 118.24(18) C32 C31 H31A 120.9 C30 C31 H31A 120.9 N6 C32 C31 124.11(18) N6 C32 H32A 117.9 C31 C32 H32A 117.9 loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance N1 C11 1.383(2) N1 C1 1.385(2) N2 C10 1.339(2) N2 C9 1.343(2) N3 C16 1.337(2) N3 C12 1.348(2) N4 C27 1.381(2) N4 C17 1.388(2) N5 C26 1.342(2) N5 C25 1.344(2) N6 C32 1.338(2) N6 C28 1.350(2) C1 C2 1.393(2) C1 C6 1.410(2) C2 C3 1.380(3) C2 H2A 0.9500 C3 C4 1.396(3) C3 H3A 0.9500 C4 C5 1.379(3) C4 H4B 0.9500 C5 C6 1.396(2) C5 H5B 0.9500 C6 C7 1.444(2) C7 C8 1.386(2) C7 C11 1.415(2) C8 C9 1.378(2) C8 H8A 0.9500 C9 H9A 0.9500 C10 C11 1.405(2) C10 C12 1.481(2) C12 C13 1.394(2) C13 C14 1.382(3) C13 H13A 0.9500 C14 C15 1.379(3) C14 H14A 0.9500 C15 C16 1.380(3) C15 H15A 0.9500 C16 H16A 0.9500 C17 C18 1.397(2) C17 C22 1.407(2) C18 C19 1.383(3) C18 H18A 0.9500 C19 C20 1.395(3) C19 H19A 0.9500 C20 C21 1.379(3) C20 H20A 0.9500 C21 C22 1.397(3) C21 H21A 0.9500 C22 C23 1.440(3) C23 C24 1.387(2) C23 C27 1.414(2) C24 C25 1.378(3) C24 H24A 0.9500 C25 H25A 0.9500 C26 C27 1.402(2) C26 C28 1.479(2) C28 C29 1.389(2) C29 C30 1.382(3) C29 H29A 0.9500 C30 C31 1.382(3) C30 H30A 0.9500 C31 C32 1.373(3) C31 H31A 0.9500 C32 H32A 0.9500