#------------------------------------------------------------------------------ #$Date: 2012-03-01 14:03:58 +0200 (Thu, 01 Mar 2012) $ #$Revision: 36625 $ #$URL: file:///home/coder/svn-repositories/cod/cif/1/50/26/1502671.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_1502671 loop_ _publ_author_name 'Zhu, Mingyan' 'Kim, Myung Hee' 'Lee, Sanghee' 'Bae, Su Jung' 'Kim, Seong Hwan' 'Park, Seung Bum' _publ_section_title ; Discovery of novel benzopyranyl tetracycles that act as inhibitors of osteoclastogenesis induced by receptor activator of NF-\kB ligand. ; _journal_issue 24 _journal_name_full 'Journal of medicinal chemistry' _journal_page_first 8760 _journal_page_last 8764 _journal_volume 53 _journal_year 2010 _chemical_formula_sum 'C22 H21 N3 O4' _chemical_formula_weight 391.42 _chemical_name_systematic ; ? ; _space_group_IT_number 15 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-C 2yc' _symmetry_space_group_name_H-M 'C 1 2/c 1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 90.00 _cell_angle_beta 105.34(3) _cell_angle_gamma 90.00 _cell_formula_units_Z 8 _cell_length_a 17.160(3) _cell_length_b 8.2410(16) _cell_length_c 28.640(6) _cell_measurement_reflns_used 982 _cell_measurement_temperature 170(2) _cell_measurement_theta_max 19.33 _cell_measurement_theta_min 2.46 _cell_volume 3905.8(14) _computing_cell_refinement 'Bruker SMART' _computing_data_collection 'Bruker SMART' _computing_data_reduction 'Bruker SAINT' _computing_molecular_graphics 'Bruker SHELXTL' _computing_publication_material 'Bruker SHELXTL' _computing_structure_refinement 'SHELXL-97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS-97 (Sheldrick, 1990)' _diffrn_ambient_temperature 170(2) _diffrn_measured_fraction_theta_full 0.997 _diffrn_measured_fraction_theta_max 0.997 _diffrn_measurement_device_type 'CCD area detector' _diffrn_measurement_method 'phi and omega scans' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0510 _diffrn_reflns_av_sigmaI/netI 0.1041 _diffrn_reflns_limit_h_max 21 _diffrn_reflns_limit_h_min -21 _diffrn_reflns_limit_k_max 9 _diffrn_reflns_limit_k_min -10 _diffrn_reflns_limit_l_max 23 _diffrn_reflns_limit_l_min -35 _diffrn_reflns_number 10622 _diffrn_reflns_theta_full 26.00 _diffrn_reflns_theta_max 26.00 _diffrn_reflns_theta_min 1.47 _exptl_absorpt_coefficient_mu 0.093 _exptl_absorpt_correction_T_max 0.993 _exptl_absorpt_correction_T_min 0.991 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details '(SADABS; Bruker, 1997)' _exptl_crystal_colour block _exptl_crystal_density_diffrn 1.331 _exptl_crystal_density_method 'not measured' _exptl_crystal_description colorless _exptl_crystal_F_000 1648 _exptl_crystal_size_max 0.10 _exptl_crystal_size_mid 0.10 _exptl_crystal_size_min 0.08 _refine_diff_density_max 0.771 _refine_diff_density_min -0.214 _refine_diff_density_rms 0.051 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.038 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 266 _refine_ls_number_reflns 3831 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.038 _refine_ls_R_factor_all 0.1122 _refine_ls_R_factor_gt 0.0590 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0462P)^2^+2.8726P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.1426 _refine_ls_wR_factor_ref 0.1672 _reflns_number_gt 2210 _reflns_number_total 3831 _reflns_threshold_expression >2sigma(I) _[local]_cod_data_source_file jm1011269_si_002.cif _[local]_cod_data_source_block ZMY-16 _[local]_cod_cif_authors_sg_H-M C2/c _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Monoclinic' changed to 'monoclinic' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.2 from 2011-04-26. Automatic conversion script Id: cif_fix_values 1715 2011-07-08 13:25:40Z adriana ; _cod_original_cell_volume 3905.8(13) _cod_database_code 1502671 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y, -z+1/2' 'x+1/2, y+1/2, z' '-x+1/2, y+1/2, -z+1/2' '-x, -y, -z' 'x, -y, z-1/2' '-x+1/2, -y+1/2, -z' 'x+1/2, -y+1/2, z-1/2' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_symmetry_multiplicity _atom_site_calc_flag _atom_site_refinement_flags C1 C 0.1853(2) 0.9549(5) 0.00257(12) 0.0601(10) Uani 1 1 d . H1A H 0.2000 1.0621 -0.0073 0.090 Uiso 1 1 calc R H1B H 0.1263 0.9460 -0.0050 0.090 Uiso 1 1 calc R H1C H 0.2064 0.8706 -0.0149 0.090 Uiso 1 1 calc R C2 C 0.22083(18) 0.9335(3) 0.05608(11) 0.0399(7) Uani 1 1 d . C3 C 0.17390(18) 0.8829(4) 0.08572(11) 0.0441(8) Uani 1 1 d . H3 H 0.1182 0.8610 0.0719 0.053 Uiso 1 1 calc R C4 C 0.20615(17) 0.8631(3) 0.13549(11) 0.0395(7) Uani 1 1 d . H4 H 0.1729 0.8288 0.1554 0.047 Uiso 1 1 calc R C5 C 0.28706(17) 0.8941(3) 0.15535(10) 0.0341(7) Uani 1 1 d . C6 C 0.33456(19) 0.9434(4) 0.12642(11) 0.0500(9) Uani 1 1 d . H6 H 0.3904 0.9645 0.1401 0.060 Uiso 1 1 calc R C7 C 0.3014(2) 0.9624(4) 0.07742(11) 0.0543(9) Uani 1 1 d . H7 H 0.3352 0.9964 0.0578 0.065 Uiso 1 1 calc R C8 C 0.37386(17) 0.7430(3) 0.22411(10) 0.0379(7) Uani 1 1 d . C9 C 0.30895(17) 0.9640(3) 0.24352(10) 0.0350(7) Uani 1 1 d . C10 C 0.41845(18) 0.6281(3) 0.30571(10) 0.0416(7) Uani 1 1 d . H10A H 0.4685 0.5741 0.3029 0.050 Uiso 1 1 calc R H10B H 0.3738 0.5484 0.2968 0.050 Uiso 1 1 calc R C11 C 0.42866(17) 0.6824(4) 0.35613(11) 0.0409(7) Uani 1 1 d . H11 H 0.4511 0.6069 0.3812 0.049 Uiso 1 1 calc R C12 C 0.40920(17) 0.8269(3) 0.36929(10) 0.0379(7) Uani 1 1 d . C13 C 0.37704(17) 0.9588(3) 0.33261(9) 0.0344(7) Uani 1 1 d . H13 H 0.3282 1.0073 0.3399 0.041 Uiso 1 1 calc R C14 C 0.44240(16) 1.0864(3) 0.34137(10) 0.0323(7) Uani 1 1 d . C15 C 0.46937(16) 1.1669(3) 0.30644(10) 0.0347(7) Uani 1 1 d . H15 H 0.4462 1.1416 0.2733 0.042 Uiso 1 1 calc R C16 C 0.52954(17) 1.2839(3) 0.31849(10) 0.0361(7) Uani 1 1 d . H16 H 0.5485 1.3348 0.2938 0.043 Uiso 1 1 calc R C17 C 0.56178(17) 1.3262(3) 0.36641(10) 0.0377(7) Uani 1 1 d . C18 C 0.53648(17) 1.2451(3) 0.40233(10) 0.0382(7) Uani 1 1 d . H18 H 0.5587 1.2724 0.4354 0.046 Uiso 1 1 calc R C19 C 0.47864(17) 1.1243(3) 0.38965(10) 0.0352(7) Uani 1 1 d . C20 C 0.42359(19) 0.8835(3) 0.42081(11) 0.0421(8) Uani 1 1 d . C21 C 0.3454(2) 0.8915(5) 0.43572(13) 0.0650(10) Uani 1 1 d . H21A H 0.3563 0.9321 0.4690 0.098 Uiso 1 1 calc R H21B H 0.3216 0.7828 0.4339 0.098 Uiso 1 1 calc R H21C H 0.3076 0.9647 0.4139 0.098 Uiso 1 1 calc R C22 C 0.4860(2) 0.7830(4) 0.45611(12) 0.0613(10) Uani 1 1 d . H22A H 0.5357 0.7787 0.4455 0.092 Uiso 1 1 calc R H22B H 0.4652 0.6727 0.4574 0.092 Uiso 1 1 calc R H22C H 0.4975 0.8323 0.4884 0.092 Uiso 1 1 calc R N1 N 0.32265(14) 0.8704(3) 0.20601(8) 0.0351(6) Uani 1 1 d . N2 N 0.40050(14) 0.7665(3) 0.27252(8) 0.0369(6) Uani 1 1 d . N3 N 0.35319(14) 0.8908(3) 0.28462(8) 0.0338(6) Uani 1 1 d . O1 O 0.39230(13) 0.6296(2) 0.20145(8) 0.0503(6) Uani 1 1 d . O2 O 0.26831(12) 1.0860(2) 0.24068(7) 0.0447(5) Uani 1 1 d . O3 O 0.61791(14) 1.4459(3) 0.38104(7) 0.0531(6) Uani 1 1 d . H3A H 0.6256 1.4932 0.3567 0.080 Uiso 1 1 calc R O4 O 0.45465(14) 1.0513(2) 0.42634(7) 0.0524(6) Uani 1 1 d . loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 C1 0.064(2) 0.071(2) 0.038(2) -0.0040(17) 0.0024(17) -0.0035(19) C2 0.0444(18) 0.0409(17) 0.0319(17) -0.0060(13) 0.0056(14) -0.0055(13) C3 0.0365(17) 0.0468(19) 0.044(2) -0.0068(15) 0.0023(14) -0.0051(14) C4 0.0400(17) 0.0382(17) 0.0409(19) 0.0003(14) 0.0116(14) -0.0056(13) C5 0.0400(17) 0.0287(15) 0.0313(17) -0.0031(12) 0.0055(13) -0.0026(12) C6 0.0396(18) 0.071(2) 0.036(2) 0.0008(16) 0.0033(15) -0.0168(16) C7 0.052(2) 0.077(2) 0.035(2) -0.0002(17) 0.0131(16) -0.0165(17) C8 0.0456(18) 0.0359(17) 0.0326(18) -0.0040(14) 0.0108(14) 0.0012(14) C9 0.0391(16) 0.0302(15) 0.0329(17) -0.0010(13) 0.0049(13) 0.0015(13) C10 0.0485(18) 0.0335(16) 0.0380(18) 0.0047(14) 0.0032(14) 0.0037(13) C11 0.0487(18) 0.0330(16) 0.0370(18) 0.0067(13) 0.0045(14) 0.0011(13) C12 0.0434(17) 0.0371(17) 0.0320(17) 0.0036(13) 0.0081(13) -0.0023(13) C13 0.0436(17) 0.0320(15) 0.0264(16) -0.0021(12) 0.0071(13) 0.0021(12) C14 0.0384(16) 0.0278(14) 0.0301(16) 0.0007(12) 0.0083(13) 0.0057(12) C15 0.0446(17) 0.0318(15) 0.0253(15) 0.0027(12) 0.0049(12) 0.0065(13) C16 0.0439(17) 0.0346(16) 0.0281(17) 0.0032(13) 0.0066(13) 0.0035(13) C17 0.0456(17) 0.0330(16) 0.0320(17) 0.0003(13) 0.0059(13) -0.0017(13) C18 0.0499(18) 0.0361(16) 0.0242(16) -0.0002(13) 0.0019(13) 0.0041(14) C19 0.0472(17) 0.0324(16) 0.0266(16) 0.0016(12) 0.0108(13) 0.0049(13) C20 0.058(2) 0.0379(18) 0.0322(17) 0.0051(13) 0.0142(15) -0.0031(14) C21 0.077(3) 0.073(3) 0.052(2) -0.0034(19) 0.030(2) -0.007(2) C22 0.085(3) 0.056(2) 0.036(2) 0.0073(16) 0.0022(18) 0.0105(19) N1 0.0425(14) 0.0318(13) 0.0289(13) 0.0007(10) 0.0054(11) 0.0021(10) N2 0.0460(14) 0.0295(13) 0.0350(15) 0.0007(10) 0.0103(11) 0.0092(11) N3 0.0408(13) 0.0292(13) 0.0302(14) -0.0026(10) 0.0072(11) 0.0069(10) O1 0.0643(15) 0.0419(13) 0.0444(13) -0.0077(11) 0.0141(11) 0.0137(11) O2 0.0495(13) 0.0391(12) 0.0401(13) -0.0033(9) 0.0025(10) 0.0122(10) O3 0.0625(15) 0.0574(15) 0.0345(13) -0.0020(10) 0.0041(11) -0.0192(11) O4 0.0887(17) 0.0438(13) 0.0285(12) -0.0023(10) 0.0220(12) -0.0159(11) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle C2 C1 H1A 109.5 C2 C1 H1B 109.5 H1A C1 H1B 109.5 C2 C1 H1C 109.5 H1A C1 H1C 109.5 H1B C1 H1C 109.5 C7 C2 C3 117.4(3) C7 C2 C1 121.4(3) C3 C2 C1 121.2(3) C2 C3 C4 121.7(3) C2 C3 H3 119.2 C4 C3 H3 119.2 C5 C4 C3 118.9(3) C5 C4 H4 120.5 C3 C4 H4 120.5 C6 C5 C4 120.1(3) C6 C5 N1 119.4(3) C4 C5 N1 120.4(3) C5 C6 C7 120.0(3) C5 C6 H6 120.0 C7 C6 H6 120.0 C6 C7 C2 121.9(3) C6 C7 H7 119.1 C2 C7 H7 119.1 O1 C8 N2 125.9(3) O1 C8 N1 127.5(3) N2 C8 N1 106.5(2) O2 C9 N3 127.2(3) O2 C9 N1 128.2(3) N3 C9 N1 104.6(2) N2 C10 C11 110.4(2) N2 C10 H10A 109.6 C11 C10 H10A 109.6 N2 C10 H10B 109.6 C11 C10 H10B 109.6 H10A C10 H10B 108.1 C12 C11 C10 125.4(3) C12 C11 H11 117.3 C10 C11 H11 117.3 C11 C12 C20 124.9(3) C11 C12 C13 121.6(3) C20 C12 C13 113.2(2) N3 C13 C14 116.2(2) N3 C13 C12 110.1(2) C14 C13 C12 105.5(2) N3 C13 H13 108.3 C14 C13 H13 108.3 C12 C13 H13 108.3 C15 C14 C19 117.7(3) C15 C14 C13 126.3(3) C19 C14 C13 116.0(2) C14 C15 C16 121.6(3) C14 C15 H15 119.2 C16 C15 H15 119.2 C17 C16 C15 119.9(3) C17 C16 H16 120.1 C15 C16 H16 120.1 O3 C17 C16 123.5(3) O3 C17 C18 117.0(2) C16 C17 C18 119.5(3) C19 C18 C17 119.6(3) C19 C18 H18 120.2 C17 C18 H18 120.2 O4 C19 C18 117.1(3) O4 C19 C14 121.2(3) C18 C19 C14 121.5(3) O4 C20 C12 110.9(2) O4 C20 C22 105.7(3) C12 C20 C22 112.9(3) O4 C20 C21 104.6(2) C12 C20 C21 111.2(3) C22 C20 C21 111.1(3) C20 C21 H21A 109.5 C20 C21 H21B 109.5 H21A C21 H21B 109.5 C20 C21 H21C 109.5 H21A C21 H21C 109.5 H21B C21 H21C 109.5 C20 C22 H22A 109.5 C20 C22 H22B 109.5 H22A C22 H22B 109.5 C20 C22 H22C 109.5 H22A C22 H22C 109.5 H22B C22 H22C 109.5 C8 N1 C9 110.6(2) C8 N1 C5 122.9(2) C9 N1 C5 126.4(2) C8 N2 N3 107.2(2) C8 N2 C10 120.6(2) N3 N2 C10 116.3(2) C9 N3 N2 109.6(2) C9 N3 C13 127.3(2) N2 N3 C13 118.8(2) C17 O3 H3A 109.5 C19 O4 C20 120.3(2) loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance C1 C2 1.502(4) C1 H1A 0.9800 C1 H1B 0.9800 C1 H1C 0.9800 C2 C7 1.377(4) C2 C3 1.380(4) C3 C4 1.395(4) C3 H3 0.9500 C4 C5 1.378(4) C4 H4 0.9500 C5 C6 1.369(4) C5 N1 1.431(4) C6 C7 1.377(4) C6 H6 0.9500 C7 H7 0.9500 C8 O1 1.226(3) C8 N2 1.354(4) C8 N1 1.379(3) C9 O2 1.214(3) C9 N3 1.361(3) C9 N1 1.392(3) C10 N2 1.465(3) C10 C11 1.477(4) C10 H10A 0.9900 C10 H10B 0.9900 C11 C12 1.319(4) C11 H11 0.9500 C12 C20 1.504(4) C12 C13 1.511(4) C13 N3 1.440(3) C13 C14 1.509(4) C13 H13 1.0000 C14 C15 1.378(4) C14 C19 1.393(4) C15 C16 1.388(4) C15 H15 0.9500 C16 C17 1.382(4) C16 H16 0.9500 C17 O3 1.365(3) C17 C18 1.389(4) C18 C19 1.385(4) C18 H18 0.9500 C19 O4 1.366(3) C20 O4 1.475(3) C20 C22 1.511(4) C20 C21 1.514(4) C21 H21A 0.9800 C21 H21B 0.9800 C21 H21C 0.9800 C22 H22A 0.9800 C22 H22B 0.9800 C22 H22C 0.9800 N2 N3 1.406(3) O3 H3A 0.8400 loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion C7 C2 C3 C4 0.7(5) C1 C2 C3 C4 -179.8(3) C2 C3 C4 C5 -0.4(4) C3 C4 C5 C6 -0.1(4) C3 C4 C5 N1 -178.1(3) C4 C5 C6 C7 0.1(5) N1 C5 C6 C7 178.2(3) C5 C6 C7 C2 0.2(5) C3 C2 C7 C6 -0.6(5) C1 C2 C7 C6 179.9(3) N2 C10 C11 C12 12.5(4) C10 C11 C12 C20 -176.9(3) C10 C11 C12 C13 -3.1(5) C11 C12 C13 N3 14.3(4) C20 C12 C13 N3 -171.3(2) C11 C12 C13 C14 -111.7(3) C20 C12 C13 C14 62.7(3) N3 C13 C14 C15 14.1(4) C12 C13 C14 C15 136.3(3) N3 C13 C14 C19 -165.4(2) C12 C13 C14 C19 -43.3(3) C19 C14 C15 C16 -1.1(4) C13 C14 C15 C16 179.3(3) C14 C15 C16 C17 -2.4(4) C15 C16 C17 O3 -176.4(3) C15 C16 C17 C18 3.3(4) O3 C17 C18 C19 178.9(3) C16 C17 C18 C19 -0.7(4) C17 C18 C19 O4 -178.5(2) C17 C18 C19 C14 -2.8(4) C15 C14 C19 O4 179.2(2) C13 C14 C19 O4 -1.2(4) C15 C14 C19 C18 3.7(4) C13 C14 C19 C18 -176.7(2) C11 C12 C20 O4 137.1(3) C13 C12 C20 O4 -37.1(3) C11 C12 C20 C22 18.7(4) C13 C12 C20 C22 -155.5(3) C11 C12 C20 C21 -107.0(3) C13 C12 C20 C21 78.8(3) O1 C8 N1 C9 172.6(3) N2 C8 N1 C9 -7.3(3) O1 C8 N1 C5 -4.9(4) N2 C8 N1 C5 175.2(2) O2 C9 N1 C8 178.7(3) N3 C9 N1 C8 0.2(3) O2 C9 N1 C5 -4.0(5) N3 C9 N1 C5 177.6(2) C6 C5 N1 C8 -71.2(4) C4 C5 N1 C8 106.9(3) C6 C5 N1 C9 111.8(3) C4 C5 N1 C9 -70.1(4) O1 C8 N2 N3 -168.7(3) N1 C8 N2 N3 11.2(3) O1 C8 N2 C10 -32.5(4) N1 C8 N2 C10 147.5(2) C11 C10 N2 C8 -167.4(2) C11 C10 N2 N3 -34.9(3) O2 C9 N3 N2 -171.7(3) N1 C9 N3 N2 6.8(3) O2 C9 N3 C13 -15.5(5) N1 C9 N3 C13 162.9(2) C8 N2 N3 C9 -11.6(3) C10 N2 N3 C9 -150.0(2) C8 N2 N3 C13 -170.0(2) C10 N2 N3 C13 51.6(3) C14 C13 N3 C9 -72.7(4) C12 C13 N3 C9 167.5(3) C14 C13 N3 N2 81.5(3) C12 C13 N3 N2 -38.2(3) C18 C19 O4 C20 -153.2(3) C14 C19 O4 C20 31.1(4) C12 C20 O4 C19 -10.4(4) C22 C20 O4 C19 112.3(3) C21 C20 O4 C19 -130.4(3)