#------------------------------------------------------------------------------ #$Date: 2012-03-01 14:15:40 +0200 (Thu, 01 Mar 2012) $ #$Revision: 36689 $ #$URL: file:///home/coder/svn-repositories/cod/cif/1/50/27/1502742.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_1502742 loop_ _publ_author_name 'Hathwar, Venkatesha R.' 'Guru Row, Tayur N.' _publ_contact_author ; Prof. Dr. T. N. Guru Row Solid State and Structural Chemistry Unit Indian Institute of Science Bangalore, 560 012 India ; _publ_section_title ; Nature of Cl···Cl intermolecular interactions via experimental and theoretical charge density analysis: correlation of polar flattening effects with geometry. ; _journal_issue 51 _journal_name_full 'The journal of physical chemistry. A' _journal_page_first 13434 _journal_page_last 13441 _journal_volume 114 _journal_year 2010 _chemical_formula_moiety 'C5 H4 Cl N O' _chemical_formula_sum 'C5 H4 Cl N O' _chemical_formula_weight 129.54 _chemical_name_common '2-chloro-3-hydroxy pyridine' _space_group_IT_number 43 _symmetry_cell_setting orthorhombic _symmetry_space_group_name_Hall 'F 2 -2d' _symmetry_space_group_name_H-M 'F d d 2' _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_conform_dict_location ftp://ftp.iucr.org/pub/cif_core.dic _audit_conform_dict_name cif_core.dic _audit_conform_dict_version 2.3 _audit_creation_date '02-Oct-10 T01:09:42-00:00' _audit_creation_method 'XD routine XDCIF' _cell_angle_alpha 90.00 _cell_angle_beta 90.00 _cell_angle_gamma 90.00 _cell_formula_units_Z 16 _cell_length_a 23.1021(8) _cell_length_b 25.1758(9) _cell_length_c 3.7363(1) _cell_measurement_reflns_used 1023 _cell_measurement_temperature 100(2) _cell_measurement_theta_max 50.14 _cell_measurement_theta_min 2.39 _cell_volume 2173.08(12) _computing_cell_refinement 'SAINTPLUS (BRUKER-AXS)' _computing_data_collection 'KAPPA APEX II (BRUKER-AXS)' _computing_data_reduction 'SAINTPLUS (BRUKER-AXS)' _computing_molecular_graphics 'XD2006 (Volkov et al, 2006)' _computing_publication_material 'XD2006 (Volkov et al, 2006)' _computing_structure_refinement 'XD2006 (Volkov et al, 2006)' _computing_structure_solution 'SHELXS-97 (Sheldrick, 2008)' _diffrn_ambient_temperature 100(2) _diffrn_measured_fraction_theta_full 0.999 _diffrn_measured_fraction_theta_max 0.999 _diffrn_measurement_device_type 'Bruker Kappa APEX II CCD detector' _diffrn_measurement_method '\f and \w scans' _diffrn_radiation_monochromator graphite _diffrn_radiation_probe x-ray _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0244 _diffrn_reflns_av_sigmaI/netI 0.0292 _diffrn_reflns_limit_h_max 49 _diffrn_reflns_limit_h_min -49 _diffrn_reflns_limit_k_max 54 _diffrn_reflns_limit_k_min -54 _diffrn_reflns_limit_l_max 8 _diffrn_reflns_limit_l_min -7 _diffrn_reflns_number 36006 _diffrn_reflns_theta_full 50.15 _diffrn_reflns_theta_max 50.14 _diffrn_reflns_theta_min 2.39 _exptl_absorpt_coefficient_mu 0.582 _exptl_absorpt_correction_T_max 0.9388 _exptl_absorpt_correction_T_min 0.8522 _exptl_absorpt_correction_type analytical _exptl_absorpt_process_details 'Bruker AXS, 2008)' _exptl_crystal_colour colorless _exptl_crystal_density_diffrn 1.584 _exptl_crystal_density_method 'not measured' _exptl_crystal_description block _exptl_crystal_F_000 1056 _exptl_crystal_size_max 0.28 _exptl_crystal_size_mid 0.27 _exptl_crystal_size_min 0.11 _refine_diff_density_max 0.129 _refine_diff_density_min -0.112 _refine_diff_density_rms 0.036 _refine_ls_abs_structure_details 'Flack H D (1983), Acta Cryst. A39, 876-881' _refine_ls_abs_structure_Flack 0.02(2) _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.017 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 245 _refine_ls_number_reflns 4889 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.017 _refine_ls_R_factor_all 0.0189 _refine_ls_R_factor_gt 0.0152 _refine_ls_R_Fsqd_factor 0.0189 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details ; calc w2 = 1/[s^2^(Fo^2^)] ; _refine_ls_weighting_scheme calc _refine_ls_wR_factor_ref 0.0365 _reflns_number_gt 4889 _reflns_number_total 5626 _reflns_threshold_expression >3sigma(I) _[local]_cod_data_source_file jp1100413_si_003.cif _[local]_cod_data_source_block VCL2 _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Orthorhombic' changed to 'orthorhombic' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.2 from 2011-04-26. Automatic conversion script Id: cif_fix_values 1715 2011-07-08 13:25:40Z adriana ; _cod_original_cell_volume 2173.1(1) _cod_database_code 1502742 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, -y, z' 'x+1/4, -y+1/4, z+1/4' '-x+1/4, y+1/4, z+1/4' 'x, y+1/2, z+1/2' '-x, -y+1/2, z+1/2' 'x+1/4, -y+3/4, z+3/4' '-x+1/4, y+3/4, z+3/4' 'x+1/2, y, z+1/2' '-x+1/2, -y, z+1/2' 'x+3/4, -y+1/4, z+3/4' '-x+3/4, y+1/4, z+3/4' 'x+1/2, y+1/2, z' '-x+1/2, -y+1/2, z' 'x+3/4, -y+3/4, z+1/4' '-x+3/4, y+3/4, z+1/4' loop_ _atom_local_axes_atom_label _atom_local_axes_atom0 _atom_local_axes_ax1 _atom_local_axes_atom1 _atom_local_axes_atom2 _atom_local_axes_ax2 CL(1) C(1) Z CL(1) N(1) Y O(1) H(1O) Z O(1) C(2) Y N(1) C(1) Z N(1) C(5) Y C(1) N(1) Z C(1) C(2) Y C(2) O(1) Z C(2) C(3) Y C(3) H(3) Z C(3) C(4) Y C(4) H(4) Z C(4) C(5) Y C(5) H(5) Z C(5) N(1) Y H(1O) O(1) Z H(1O) C(2) Y H(3) C(3) Z H(3) C(4) Y H(4) C(4) Z H(4) C(3) Y H(5) C(5) Z H(5) N(1) Y loop_ _atom_rho_multipole_atom_label _atom_rho_multipole_coeff_Pv _atom_rho_multipole_coeff_P00 _atom_rho_multipole_coeff_P11 _atom_rho_multipole_coeff_P1-1 _atom_rho_multipole_coeff_P10 _atom_rho_multipole_coeff_P20 _atom_rho_multipole_coeff_P21 _atom_rho_multipole_coeff_P2-1 _atom_rho_multipole_coeff_P22 _atom_rho_multipole_coeff_P2-2 _atom_rho_multipole_coeff_P30 _atom_rho_multipole_coeff_P31 _atom_rho_multipole_coeff_P3-1 _atom_rho_multipole_coeff_P32 _atom_rho_multipole_coeff_P3-2 _atom_rho_multipole_coeff_P33 _atom_rho_multipole_coeff_P3-3 _atom_rho_multipole_coeff_P40 _atom_rho_multipole_coeff_P41 _atom_rho_multipole_coeff_P4-1 _atom_rho_multipole_coeff_P42 _atom_rho_multipole_coeff_P4-2 _atom_rho_multipole_coeff_P43 _atom_rho_multipole_coeff_P4-3 _atom_rho_multipole_coeff_P44 _atom_rho_multipole_coeff_P4-4 _atom_rho_multipole_kappa _atom_rho_multipole_kappa_prime0 _atom_rho_multipole_kappa_prime1 _atom_rho_multipole_kappa_prime2 _atom_rho_multipole_kappa_prime3 _atom_rho_multipole_kappa_prime4 Cl(1) 7.14(4) 0 0 0 0.016(14) -0.189(16) 0.097(14) 0 0.151(16) 0.095(14) 0.069(13) 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1.046(3) 1.13(4) 1.13(4) 1.13(4) 1.13(4) 1.13(4) O(1) 6.24(4) 0 0.08(2) -0.034(16) -0.020(17) -0.045(15) 0.023(16) 0.038(13) 0.073(17) 0.063(17) 0.093(18) -0.045(17) -0.081(15) 0.059(17) -0.006(16) 0.022(15) -0.037(19) 0 0 0 0 0 0 0 0 0 0.990(3) 0.76(4) 0.76(4) 0.76(4) 0.76(4) 0.76(4) N(1) 5.20(6) 0 -0.03(2) -0.059(18) -0.057(19) -0.005(17) -0.031(17) -0.015(16) -0.115(18) 0.048(17) 0.13(2) 0.017(16) 0.009(17) 0.09(2) 0.010(18) 0.045(17) -0.053(16) 0 0 0 0 0 0 0 0 0 0.987(4) 0.84(4) 0.84(4) 0.84(4) 0.84(4) 0.84(4) C(1) 4.06(5) 0 -0.016(18) 0.092(17) 0.04(2) 0.121(17) -0.056(16) -0.025(16) -0.072(15) 0.040(15) 0.29(2) 0.028(18) 0.048(18) 0.173(19) 0.028(17) -0.031(16) 0.030(16) 0 0 0 0 0 0 0 0 0 1.005(3) 0.941(15) 0.941(15) 0.941(15) 0.941(15) 0.941(15) C(2) 3.96(4) 0 0.02(2) 0.027(19) -0.06(2) 0.070(17) -0.009(15) -0.013(16) -0.124(16) 0.006(15) 0.32(2) 0.010(16) 0.055(18) 0.146(19) -0.046(18) 0.005(17) 0.045(17) 0 0 0 0 0 0 0 0 0 1.005(3) 0.941(15) 0.941(15) 0.941(15) 0.941(15) 0.941(15) C(3) 4.12(5) 0 0.03(2) 0.049(19) -0.06(2) 0.038(17) 0.051(17) -0.033(17) -0.150(18) 0.050(18) 0.26(2) 0.02(2) -0.010(18) 0.15(2) -0.065(19) 0.039(19) -0.03(2) 0 0 0 0 0 0 0 0 0 1.005(3) 0.941(15) 0.941(15) 0.941(15) 0.941(15) 0.941(15) C(4) 4.10(5) 0 0.05(2) 0.03(2) -0.00(2) 0.086(19) 0.022(16) 0.040(17) -0.069(19) 0.024(18) 0.26(2) 0.005(17) -0.013(18) 0.141(19) -0.008(19) 0.046(18) 0.016(19) 0 0 0 0 0 0 0 0 0 1.005(3) 0.941(15) 0.941(15) 0.941(15) 0.941(15) 0.941(15) C(5) 4.00(6) 0 0.007(18) -0.08(2) 0.01(2) 0.096(19) 0.031(16) 0.015(18) -0.098(19) -0.040(17) 0.24(2) -0.013(17) 0.029(19) 0.202(19) 0.000(19) -0.010(18) -0.005(18) 0 0 0 0 0 0 0 0 0 1.005(3) 0.941(15) 0.941(15) 0.941(15) 0.941(15) 0.941(15) H(1O) 0.65(3) 0 0 0 0.14(2) 0.042(2) 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1.2 1.2 1.2 1.2 1.2 1.2 H(3) 0.88(3) 0 0 0 0.13(2) 0.09(2) 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1.2 1.2 1.2 1.2 1.2 1.2 H(4) 0.76(3) 0 0 0 0.153(19) 0.03(3) 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1.2 1.2 1.2 1.2 1.2 1.2 H(5) 0.89(3) 0 0 0 0.125(19) 0.11(3) 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1.2 1.2 1.2 1.2 1.2 1.2 loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 Cl(1) 0.01226(3) 0.01320(3) 0.03374(6) -0.003007(19) -0.00113(3) 0.00634(3) O(1) 0.00964(8) 0.01505(9) 0.03099(16) 0.00057(7) -0.00304(11) 0.00526(12) N(1) 0.00973(8) 0.01265(8) 0.02148(12) 0.00077(7) -0.00139(10) 0.00162(10) C(1) 0.00860(9) 0.01075(8) 0.01934(12) -0.00060(7) -0.00079(9) 0.00163(9) C(2) 0.00853(9) 0.01149(9) 0.01946(12) -0.00049(7) -0.00049(9) 0.00152(9) C(3) 0.01131(10) 0.01345(10) 0.02473(14) -0.00250(8) 0.00094(12) 0.00262(12) C(4) 0.01616(12) 0.01191(10) 0.02218(14) -0.00098(9) 0.00199(12) 0.00322(10) C(5) 0.01446(11) 0.01254(10) 0.01962(13) 0.00230(8) -0.00042(11) 0.00218(10) H(1O) 0.015684 0.031864 0.059033 -0.001758 -0.003695 0.008871 H(3) 0.018394 0.03409 0.063946 -0.008875 -0.000955 0.008559 H(4) 0.036994 0.020155 0.051921 -0.005367 0.002919 0.011273 H(5) 0.030077 0.027118 0.047044 0.00843 -0.006563 0.010017 loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_occupancy _atom_site_symmetry_multiplicity Cl(1) Cl 0.039017(3) 0.055303 0.860(2) 0.02 1 16 O(1) O 0.159346(12) 0.089356(12) 0.870(2) 0.019 1 16 N(1) N 0.025683(12) 0.150691(11) 0.596(2) 0.015 1 16 C(1) C 0.064524(13) 0.116511(12) 0.718(2) 0.013 1 16 C(2) C 0.124146(13) 0.126881(12) 0.738(2) 0.013 1 16 C(3) C 0.142428(14) 0.176953(12) 0.622(2) 0.016 1 16 C(4) C 0.101963(16) 0.213213(13) 0.493(2) 0.017 1 16 C(5) C 0.044059(15) 0.198477(13) 0.483(2) 0.016 1 16 H(1O) H 0.198306 0.103064 0.849162 0.036 1 16 H(3) H 0.187132 0.188639 0.643347 0.039 1 16 H(4) H 0.115591 0.25247 0.414592 0.036 1 16 H(5) H 0.012678 0.225719 0.374381 0.035 1 16 loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Cl Cl 0.1484 0.1585 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_2 _geom_angle_site_symmetry_3 _geom_angle_publ_flag C(2) O(1) H(1O) 106.5(2) 1_555 1_555 1_555 yes C(1) N(1) C(5) 118.42(3) 1_555 1_555 1_555 yes CL(1) C(1) N(1) 116.90(2) 1_555 1_555 1_555 yes CL(1) C(1) C(2) 118.88(2) 1_555 1_555 1_555 yes N(1) C(1) C(2) 124.22(3) 1_555 1_555 1_555 yes O(1) C(2) C(1) 118.93(3) 1_555 1_555 1_555 yes O(1) C(2) C(3) 124.48(3) 1_555 1_555 1_555 yes C(1) C(2) C(3) 116.59(3) 1_555 1_555 1_555 yes C(2) C(3) C(4) 119.71(3) 1_555 1_555 1_555 yes C(2) C(3) H(3) 120.83(18) 1_555 1_555 1_555 yes C(4) C(3) H(3) 119.38(15) 1_555 1_555 1_555 yes C(3) C(4) C(5) 118.70(3) 1_555 1_555 1_555 yes C(3) C(4) H(4) 119.92(11) 1_555 1_555 1_555 yes C(5) C(4) H(4) 121.32(9) 1_555 1_555 1_555 yes N(1) C(5) C(4) 122.37(3) 1_555 1_555 1_555 yes N(1) C(5) H(5) 118.42(7) 1_555 1_555 1_555 yes C(4) C(5) H(5) 119.19(8) 1_555 1_555 1_555 yes loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_site_symmetry_1 _geom_bond_site_symmetry_2 _geom_bond_publ_flag CL(1) C(1) 1.7325(3) 1_555 1_555 yes O(1) C(2) 1.3404(4) 1_555 1_555 yes O(1) H(1O) 0.967 1_555 1_555 yes N(1) C(1) 1.3239(4) 1_555 1_555 yes N(1) C(5) 1.3440(4) 1_555 1_555 yes C(1) C(2) 1.4038(4) 1_555 1_555 yes C(2) C(3) 1.3985(4) 1_555 1_555 yes C(3) C(4) 1.3929(5) 1_555 1_555 yes C(3) H(3) 1.0767 1_555 1_555 yes C(4) C(5) 1.3887(5) 1_555 1_555 yes C(4) H(4) 1.077 1_555 1_555 yes C(5) H(5) 1.077 1_555 1_555 yes loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion _geom_torsion_site_symmetry_1 _geom_torsion_site_symmetry_2 _geom_torsion_site_symmetry_3 _geom_torsion_site_symmetry_4 _geom_torsion_publ_flag H(1O) O(1) C(2) C(1) 177.0(6) 1_555 1_555 1_555 1_555 yes H(1O) O(1) C(2) C(3) -4.2(4) 1_555 1_555 1_555 1_555 yes C(5) N(1) C(1) CL(1) -179.7(6) 1_555 1_555 1_555 1_555 yes C(5) N(1) C(1) C(2) 0.1(5) 1_555 1_555 1_555 1_555 yes C(1) N(1) C(5) C(4) -0.6(5) 1_555 1_555 1_555 1_555 yes C(1) N(1) C(5) H(5) 177.7(7) 1_555 1_555 1_555 1_555 yes CL(1) C(1) C(2) O(1) -0.8(4) 1_555 1_555 1_555 1_555 yes CL(1) C(1) C(2) C(3) -179.8(6) 1_555 1_555 1_555 1_555 yes N(1) C(1) C(2) O(1) 179.3(7) 1_555 1_555 1_555 1_555 yes N(1) C(1) C(2) C(3) 0.4(5) 1_555 1_555 1_555 1_555 yes O(1) C(2) C(3) C(4) -179.3(7) 1_555 1_555 1_555 1_555 yes O(1) C(2) C(3) H(3) -2.5(4) 1_555 1_555 1_555 1_555 yes C(1) C(2) C(3) C(4) -0.5(4) 1_555 1_555 1_555 1_555 yes C(1) C(2) C(3) H(3) 176.3(7) 1_555 1_555 1_555 1_555 yes C(2) C(3) C(4) C(5) 0.1(4) 1_555 1_555 1_555 1_555 yes C(2) C(3) C(4) H(4) 177.1(7) 1_555 1_555 1_555 1_555 yes H(3) C(3) C(4) C(5) -176.8(7) 1_555 1_555 1_555 1_555 yes H(3) C(3) C(4) H(4) 0.2(4) 1_555 1_555 1_555 1_555 yes C(3) C(4) C(5) N(1) 0.5(5) 1_555 1_555 1_555 1_555 yes C(3) C(4) C(5) H(5) -177.7(7) 1_555 1_555 1_555 1_555 yes H(4) C(4) C(5) N(1) -176.5(7) 1_555 1_555 1_555 1_555 yes H(4) C(4) C(5) H(5) 5.3(4) 1_555 1_555 1_555 1_555 yes