#------------------------------------------------------------------------------ #$Date: 2013-12-28 09:07:06 +0200 (Sat, 28 Dec 2013) $ #$Revision: 91932 $ #$URL: file:///home/coder/svn-repositories/cod/cif/1/50/39/1503924.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_1503924 loop_ _publ_author_name 'Testero, Sebastian A.' 'O'Daniel, Peter I' 'Shi, Qicun' 'Lee, Mijoon' 'Hesek, Dusan' 'Ishiwata, Akihiro' 'Noll, Bruce C.' 'Mobashery, Shahriar' _publ_section_title ; Regiospecific syntheses of 6alpha-(1R-Hydroxyoctyl)penicillanic acid and 6beta-(1R-hydroxyoctyl)penicillanic acid as mechanistic probes of class D beta-lactamases. ; _journal_issue 12 _journal_name_full 'Organic letters' _journal_page_first 2515 _journal_page_last 2518 _journal_volume 11 _journal_year 2009 _chemical_absolute_configuration ad _chemical_compound_source synthesized _chemical_formula_moiety 'C11 H17 N O4 S, C H Cl3' _chemical_formula_sum 'C12 H18 Cl3 N O4 S' _chemical_formula_weight 378.68 _chemical_name_common ;6-(1-hydroxy-1-methyl-ethyl)-3,3-dimethyl- 7-oxo-4-thia-1-aza-bicyclo[3.2.0]heptane-2-carboxylic acid ; _space_group_IT_number 19 _symmetry_cell_setting orthorhombic _symmetry_Int_Tables_number 19 _symmetry_space_group_name_Hall 'P 2ac 2ab' _symmetry_space_group_name_H-M 'P 21 21 21' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 90.00 _cell_angle_beta 90.00 _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 6.7893(2) _cell_length_b 10.4280(2) _cell_length_c 23.6690(5) _cell_measurement_reflns_used 9958 _cell_measurement_temperature 100(2) _cell_measurement_theta_max 68.91 _cell_measurement_theta_min 4.63 _cell_volume 1675.74(7) _computing_cell_refinement 'APEX2/SAINT (Bruker, 2007)' _computing_data_collection 'APEX2 (Bruker, 2007)' _computing_data_reduction 'SAINT/XPREP (Bruker, 2007; Sheldrick, 2008)' _computing_molecular_graphics 'XP (Sheldrick, 2008)' _computing_publication_material 'XCIF (Sheldrick, 2008)/enCIFer (CCDC, 2005)' _computing_structure_refinement 'XL (Sheldrick, 2008)' _computing_structure_solution 'XS (Sheldrick, 2008)' _diffrn_ambient_temperature 100(2) _diffrn_detector_area_resol_mean 8.33 _diffrn_measured_fraction_theta_full 0.975 _diffrn_measured_fraction_theta_max 0.975 _diffrn_measurement_device_type 'Bruker SMART Apex CCD diffractometer' _diffrn_measurement_method '\f and \w scans' _diffrn_radiation_monochromator graphite _diffrn_radiation_probe x-ray _diffrn_radiation_type CuK\a _diffrn_radiation_wavelength 1.54178 _diffrn_reflns_av_R_equivalents 0.0235 _diffrn_reflns_av_sigmaI/netI 0.0221 _diffrn_reflns_limit_h_max 6 _diffrn_reflns_limit_h_min -7 _diffrn_reflns_limit_k_max 12 _diffrn_reflns_limit_k_min -12 _diffrn_reflns_limit_l_max 28 _diffrn_reflns_limit_l_min -27 _diffrn_reflns_number 18980 _diffrn_reflns_theta_full 69.44 _diffrn_reflns_theta_max 69.44 _diffrn_reflns_theta_min 3.73 _diffrn_source 'fine-focus sealed tube' _diffrn_source_type 'Siemens KFFCU2K-90' _exptl_absorpt_coefficient_mu 6.247 _exptl_absorpt_correction_T_max 0.39 _exptl_absorpt_correction_T_min 0.24 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details 'Sheldrick, G. M. (2007). SADABS. University of G\"ottingen, Germany.' _exptl_crystal_colour 'clear colorless' _exptl_crystal_density_diffrn 1.501 _exptl_crystal_density_method 'not measured' _exptl_crystal_description parallelepiped _exptl_crystal_F_000 784 _exptl_crystal_size_max 0.27 _exptl_crystal_size_mid 0.19 _exptl_crystal_size_min 0.15 _refine_diff_density_max 0.287 _refine_diff_density_min -0.226 _refine_diff_density_rms 0.054 _refine_ls_abs_structure_details 'Flack H D (1983), Acta Cryst. A39, 876-881' _refine_ls_abs_structure_Flack 0.043(11) _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.097 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 199 _refine_ls_number_reflns 3030 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.097 _refine_ls_R_factor_all 0.0236 _refine_ls_R_factor_gt 0.0234 _refine_ls_shift/su_max 0.001 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0373P)^2^+0.4286P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.0605 _refine_ls_wR_factor_ref 0.0606 _reflns_number_gt 3006 _reflns_number_total 3030 _reflns_threshold_expression >2sigma(I) _[local]_cod_data_source_file ol900668k_si_001.cif _[local]_cod_data_source_block compound_7 _cod_database_code 1503924 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' 'x+1/2, -y+1/2, -z' '-x, y+1/2, -z+1/2' '-x+1/2, -y, z+1/2' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_symmetry_multiplicity _atom_site_calc_flag _atom_site_refinement_flags S1 S 0.93825(6) 0.62347(4) 0.826922(17) 0.01405(10) Uani 1 1 d . C2 C 0.7933(3) 0.69328(16) 0.76815(7) 0.0128(3) Uani 1 1 d . C3 C 0.5803(3) 0.64084(16) 0.77870(7) 0.0126(3) Uani 1 1 d . H3 H 0.5711 0.5526 0.7623 0.015 Uiso 1 1 calc R N4 N 0.5536(2) 0.63194(13) 0.83996(6) 0.0135(3) Uani 1 1 d . C5 C 0.7336(3) 0.64367(15) 0.87547(7) 0.0135(4) Uani 1 1 d . H5 H 0.7395 0.7258 0.8972 0.016 Uiso 1 1 calc R C6 C 0.6592(3) 0.52823(16) 0.91132(7) 0.0139(3) Uani 1 1 d . H6 H 0.6075 0.5572 0.9488 0.017 Uiso 1 1 calc R C7 C 0.4937(3) 0.51982(17) 0.86716(7) 0.0136(4) Uani 1 1 d . O8 O 0.36519(19) 0.44516(12) 0.85555(5) 0.0183(3) Uani 1 1 d . C9 C 0.8770(3) 0.64439(18) 0.71239(8) 0.0173(4) Uani 1 1 d . H9A H 0.8035 0.6823 0.6809 0.026 Uiso 1 1 calc R H9B H 0.8652 0.5508 0.7109 0.026 Uiso 1 1 calc R H9C H 1.0161 0.6687 0.7095 0.026 Uiso 1 1 calc R C10 C 0.8038(3) 0.83979(16) 0.77204(8) 0.0170(4) Uani 1 1 d . H10A H 0.9415 0.8673 0.7697 0.025 Uiso 1 1 calc R H10B H 0.7477 0.8680 0.8081 0.025 Uiso 1 1 calc R H10C H 0.7289 0.8778 0.7409 0.025 Uiso 1 1 calc R C11 C 0.4275(3) 0.72562(15) 0.74983(7) 0.0128(3) Uani 1 1 d . O12 O 0.42035(19) 0.69872(12) 0.69533(5) 0.0164(3) Uani 1 1 d . H12O H 0.3508 0.7537 0.6787 0.025 Uiso 1 1 calc R O13 O 0.3307(2) 0.80742(12) 0.77293(5) 0.0173(3) Uani 1 1 d . C14 C 0.7835(3) 0.40550(16) 0.91725(7) 0.0151(4) Uani 1 1 d . O15 O 0.8189(2) 0.34923(12) 0.86251(5) 0.0153(3) Uani 1 1 d . H15O H 0.869(4) 0.396(2) 0.8447(10) 0.020(7) Uiso 1 1 d . C16 C 0.9795(3) 0.43436(18) 0.94574(8) 0.0188(4) Uani 1 1 d . H16A H 1.0596 0.3562 0.9469 0.028 Uiso 1 1 calc R H16B H 0.9558 0.4647 0.9843 0.028 Uiso 1 1 calc R H16C H 1.0493 0.5007 0.9243 0.028 Uiso 1 1 calc R C17 C 0.6666(3) 0.30563(17) 0.94983(8) 0.0215(4) Uani 1 1 d . H17B H 0.5386 0.2927 0.9316 0.032 Uiso 1 1 calc R H17A H 0.6464 0.3353 0.9887 0.032 Uiso 1 1 calc R H17C H 0.7394 0.2245 0.9503 0.032 Uiso 1 1 calc R C18 C 0.2502(3) 0.86273(17) 0.90343(7) 0.0182(4) Uani 1 1 d . H18 H 0.2353 0.8118 0.8679 0.022 Uiso 1 1 calc R Cl1 Cl 0.29792(8) 0.75633(4) 0.960002(19) 0.02627(12) Uani 1 1 d . Cl2 Cl 0.44591(8) 0.97145(4) 0.894869(19) 0.02644(12) Uani 1 1 d . Cl3 Cl 0.02773(8) 0.94622(5) 0.91652(2) 0.02682(12) Uani 1 1 d . loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 S1 0.0133(2) 0.01427(19) 0.0146(2) 0.00447(15) -0.00158(16) -0.00085(15) C2 0.0133(9) 0.0124(8) 0.0127(8) 0.0041(6) -0.0027(7) -0.0007(6) C3 0.0145(9) 0.0101(7) 0.0133(8) -0.0004(6) -0.0007(7) -0.0005(7) N4 0.0138(7) 0.0127(7) 0.0138(7) 0.0010(5) -0.0014(6) -0.0001(6) C5 0.0148(9) 0.0110(8) 0.0148(8) -0.0006(6) -0.0008(7) 0.0001(7) C6 0.0172(9) 0.0122(7) 0.0122(8) -0.0001(6) 0.0016(7) -0.0021(7) C7 0.0152(9) 0.0131(8) 0.0124(8) -0.0002(6) 0.0040(6) 0.0031(7) O8 0.0182(7) 0.0176(6) 0.0193(6) 0.0021(5) -0.0002(5) -0.0037(5) C9 0.0175(9) 0.0185(9) 0.0159(9) 0.0034(7) 0.0013(7) 0.0004(7) C10 0.0196(10) 0.0126(8) 0.0187(9) 0.0042(6) -0.0034(7) -0.0023(7) C11 0.0122(9) 0.0115(8) 0.0148(8) 0.0020(6) -0.0001(7) -0.0033(7) O12 0.0197(7) 0.0166(6) 0.0129(6) 0.0007(5) -0.0029(5) 0.0045(5) O13 0.0181(7) 0.0170(6) 0.0167(6) -0.0004(5) 0.0001(5) 0.0055(5) C14 0.0213(10) 0.0129(8) 0.0111(8) 0.0010(6) -0.0009(7) 0.0012(7) O15 0.0199(7) 0.0131(6) 0.0129(6) -0.0004(5) 0.0021(5) -0.0014(5) C16 0.0225(10) 0.0184(8) 0.0156(9) 0.0015(7) -0.0044(7) 0.0026(7) C17 0.0305(11) 0.0159(8) 0.0180(9) 0.0039(7) 0.0030(8) -0.0001(8) C18 0.0213(10) 0.0175(8) 0.0160(9) -0.0027(7) 0.0018(7) -0.0018(7) Cl1 0.0385(3) 0.0200(2) 0.0203(2) 0.00328(17) 0.00673(19) 0.00589(19) Cl2 0.0306(3) 0.0252(2) 0.0236(2) -0.00180(18) 0.00282(19) -0.0105(2) Cl3 0.0258(3) 0.0290(2) 0.0257(2) -0.00309(19) -0.00102(19) 0.00469(19) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0181 0.0091 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0311 0.0180 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0492 0.0322 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' S S 0.3331 0.5567 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Cl Cl 0.3639 0.7018 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle C5 S1 C2 91.32(8) C9 C2 C10 111.60(15) C9 C2 C3 111.44(15) C10 C2 C3 112.43(15) C9 C2 S1 108.69(12) C10 C2 S1 108.77(12) C3 C2 S1 103.50(10) N4 C3 C11 113.35(14) N4 C3 C2 107.13(14) C11 C3 C2 110.75(13) N4 C3 H3 108.5 C11 C3 H3 108.5 C2 C3 H3 108.5 C7 N4 C3 123.10(14) C7 N4 C5 92.73(13) C3 N4 C5 116.89(15) N4 C5 C6 88.73(13) N4 C5 S1 105.16(11) C6 C5 S1 120.23(12) N4 C5 H5 113.2 C6 C5 H5 113.2 S1 C5 H5 113.2 C7 C6 C14 114.53(14) C7 C6 C5 84.86(13) C14 C6 C5 120.98(15) C7 C6 H6 111.3 C14 C6 H6 111.3 C5 C6 H6 111.3 O8 C7 N4 130.48(17) O8 C7 C6 136.34(16) N4 C7 C6 93.04(13) C2 C9 H9A 109.5 C2 C9 H9B 109.5 H9A C9 H9B 109.5 C2 C9 H9C 109.5 H9A C9 H9C 109.5 H9B C9 H9C 109.5 C2 C10 H10A 109.5 C2 C10 H10B 109.5 H10A C10 H10B 109.5 C2 C10 H10C 109.5 H10A C10 H10C 109.5 H10B C10 H10C 109.5 O13 C11 O12 124.89(15) O13 C11 C3 125.24(15) O12 C11 C3 109.86(14) C11 O12 H12O 109.5 O15 C14 C17 105.31(14) O15 C14 C16 109.44(15) C17 C14 C16 111.55(15) O15 C14 C6 110.34(13) C17 C14 C6 109.26(15) C16 C14 C6 110.81(14) C14 O15 H15O 108.8(19) C14 C16 H16A 109.5 C14 C16 H16B 109.5 H16A C16 H16B 109.5 C14 C16 H16C 109.5 H16A C16 H16C 109.5 H16B C16 H16C 109.5 C14 C17 H17B 109.5 C14 C17 H17A 109.5 H17B C17 H17A 109.5 C14 C17 H17C 109.5 H17B C17 H17C 109.5 H17A C17 H17C 109.5 Cl2 C18 Cl1 110.69(10) Cl2 C18 Cl3 110.35(10) Cl1 C18 Cl3 109.40(10) Cl2 C18 H18 108.8 Cl1 C18 H18 108.8 Cl3 C18 H18 108.8 loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance S1 C5 1.8153(18) S1 C2 1.8531(17) C2 C9 1.525(2) C2 C10 1.532(2) C2 C3 1.566(2) C3 N4 1.464(2) C3 C11 1.525(2) C3 H3 1.0000 N4 C7 1.395(2) N4 C5 1.488(2) C5 C6 1.557(2) C5 H5 1.0000 C6 C7 1.537(2) C6 C14 1.539(2) C6 H6 1.0000 C7 O8 1.201(2) C9 H9A 0.9800 C9 H9B 0.9800 C9 H9C 0.9800 C10 H10A 0.9800 C10 H10B 0.9800 C10 H10C 0.9800 C11 O13 1.208(2) C11 O12 1.321(2) O12 H12O 0.8400 C14 O15 1.443(2) C14 C17 1.520(3) C14 C16 1.522(3) O15 H15O 0.73(3) C16 H16A 0.9800 C16 H16B 0.9800 C16 H16C 0.9800 C17 H17B 0.9800 C17 H17A 0.9800 C17 H17C 0.9800 C18 Cl2 1.7584(19) C18 Cl1 1.7689(18) C18 Cl3 1.771(2) C18 H18 1.0000 loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_angle_DHA _geom_hbond_distance_DA _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_publ_flag O12 H12O 0.840 1.809 170 2.6412(18) O15 3_656 y O15 H15O 0.73(2) 2.46(2) 147(2) 3.0894(13) S1 1_555 y loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion C5 S1 C2 C9 -155.93(12) C5 S1 C2 C10 82.38(14) C5 S1 C2 C3 -37.37(12) C9 C2 C3 N4 150.54(14) C10 C2 C3 N4 -83.31(16) S1 C2 C3 N4 33.90(15) C9 C2 C3 C11 -85.40(17) C10 C2 C3 C11 40.76(19) S1 C2 C3 C11 157.97(11) C11 C3 N4 C7 111.20(18) C2 C3 N4 C7 -126.34(17) C11 C3 N4 C5 -135.58(15) C2 C3 N4 C5 -13.12(18) C7 N4 C5 C6 -6.19(13) C3 N4 C5 C6 -135.77(14) C7 N4 C5 S1 114.86(11) C3 N4 C5 S1 -14.72(16) C2 S1 C5 N4 30.22(11) C2 S1 C5 C6 127.77(14) N4 C5 C6 C7 5.63(12) S1 C5 C6 C7 -101.22(14) N4 C5 C6 C14 121.24(16) S1 C5 C6 C14 14.4(2) C3 N4 C7 O8 -45.1(3) C5 N4 C7 O8 -169.94(19) C3 N4 C7 C6 131.14(17) C5 N4 C7 C6 6.28(13) C14 C6 C7 O8 48.0(3) C5 C6 C7 O8 169.8(2) C14 C6 C7 N4 -127.82(15) C5 C6 C7 N4 -6.02(13) N4 C3 C11 O13 21.1(2) C2 C3 C11 O13 -99.3(2) N4 C3 C11 O12 -160.56(14) C2 C3 C11 O12 79.00(17) C7 C6 C14 O15 39.7(2) C5 C6 C14 O15 -59.5(2) C7 C6 C14 C17 -75.67(18) C5 C6 C14 C17 -174.83(16) C7 C6 C14 C16 161.03(14) C5 C6 C14 C16 61.9(2) _journal_paper_doi 10.1021/ol900668k