#------------------------------------------------------------------------------ #$Date: 2012-03-07 13:03:19 +0200 (Wed, 07 Mar 2012) $ #$Revision: 39202 $ #$URL: file:///home/coder/svn-repositories/cod/cif/1/50/39/1503944.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_1503944 loop_ _publ_author_name 'Picon, Sylvain' 'Tran, Huu Dau Elise' 'Martin, Marie-Th\'er\`ese' 'Retailleau, Pascal' 'Zaparucha, Anne' 'Al-Mourabit, Ali' _publ_section_title ; Biomimetically inspired short access to the 2-aminoimidazole-fused tetracyclic core of (+/-)-dibromoagelaspongin. ; _journal_issue 12 _journal_name_full 'Organic letters' _journal_page_first 2523 _journal_page_last 2526 _journal_volume 11 _journal_year 2009 _chemical_formula_moiety 'C14 H10 D3 Br2 N5 O3, D2 O' _chemical_formula_sum 'C14 H10 Br2 D5 N5 O4' _chemical_formula_weight 482.12 _chemical_name_systematic ; 2,3-dibromo-6,6-deuterated dihydroxy-4a-(pyrimidin-2-yl deuterated amino) -5,6,7,8-tetrahydro-4aH, 10Hpyrrolo[1',2':3,4]imidazo[1,2-a]pyridin-10-one deuterated hydrate ; _space_group_IT_number 14 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-P 2ybc' _symmetry_space_group_name_H-M 'P 1 21/c 1' _atom_sites_solution_hydrogens difmap _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 90.00 _cell_angle_beta 118.03(2) _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 11.905(4) _cell_length_b 13.448(5) _cell_length_c 12.532(5) _cell_measurement_reflns_used 4894 _cell_measurement_temperature 293(2) _cell_measurement_theta_max 19.78 _cell_measurement_theta_min 0.41 _cell_volume 1771.0(12) _computing_cell_refinement 'DENZO (Otwinowski & Minor, 1997) COLLECT (Nonius B.V., 1999)' _computing_data_collection 'DENZO (Otwinowski & Minor, 1997) COLLECT (Nonius B.V., 1999)' _computing_data_reduction 'SCALEPACK (Otwinowski & Minor, 1997)' _computing_molecular_graphics 'PLATON (Spek, 1980-2004)' _computing_publication_material 'SHELXL-97 (Sheldrick, 1997)' _computing_structure_refinement 'SHELXL-97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS-97 (Sheldrick, 1990)' _diffrn_ambient_temperature 293(2) _diffrn_measured_fraction_theta_full 0.986 _diffrn_measured_fraction_theta_max 0.986 _diffrn_measurement_device_type 'Nonius kappa-CCD diffractometer' _diffrn_measurement_method 'phi and omega scans' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71069 _diffrn_reflns_av_R_equivalents 0.0880 _diffrn_reflns_av_sigmaI/netI 0.1190 _diffrn_reflns_limit_h_max 11 _diffrn_reflns_limit_h_min -11 _diffrn_reflns_limit_k_max 12 _diffrn_reflns_limit_k_min -12 _diffrn_reflns_limit_l_max 11 _diffrn_reflns_limit_l_min -11 _diffrn_reflns_number 6127 _diffrn_reflns_theta_full 19.60 _diffrn_reflns_theta_max 19.60 _diffrn_reflns_theta_min 2.38 _diffrn_standards_number 0 _exptl_absorpt_coefficient_mu 4.607 _exptl_absorpt_correction_T_max 0.794 _exptl_absorpt_correction_T_min 0.637 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details 'Scalepack (Otwinowski & Minor, 1997)' _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.808 _exptl_crystal_density_method 'not measured' _exptl_crystal_description needle _exptl_crystal_F_000 944 _exptl_crystal_size_max 0.25 _exptl_crystal_size_mid 0.05 _exptl_crystal_size_min 0.05 _refine_diff_density_max 0.774 _refine_diff_density_min -0.406 _refine_diff_density_rms 0.098 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.032 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 226 _refine_ls_number_reflns 1529 _refine_ls_number_restraints 88 _refine_ls_restrained_S_all 1.003 _refine_ls_R_factor_all 0.1109 _refine_ls_R_factor_gt 0.0558 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0559P)^2^+1.9885P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.1159 _refine_ls_wR_factor_ref 0.1376 _reflns_number_gt 955 _reflns_number_total 1529 _reflns_threshold_expression >2sigma(I) _[local]_cod_data_source_file ol900745c_si_002.cif _[local]_cod_data_source_block compound_32_CCDC_694748 _[local]_cod_cif_authors_sg_H-M 'P 21/c' _[local]_cod_chemical_formula_sum_orig 'C14 H10 D5 Br2 N5 O4' _cod_original_cell_volume 1771.0(11) _cod_database_code 1503944 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y+1/2, -z+1/2' '-x, -y, -z' 'x, -y-1/2, z-1/2' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_symmetry_multiplicity _atom_site_calc_flag _atom_site_refinement_flags Br1 Br 1.10699(16) 0.14287(13) 0.94937(13) 0.0714(7) Uani 1 1 d . Br2 Br 0.98857(15) 0.28930(12) 0.67428(13) 0.0625(6) Uani 1 1 d . O1 O 0.5242(9) 0.0584(7) 0.6679(7) 0.053(3) Uani 1 1 d . O2 O 0.7019(9) 0.3841(6) 0.5156(7) 0.045(3) Uani 1 1 d . D2 D 0.6743 0.4409 0.4986 0.054 Uiso 1 1 calc R O3 O 0.5857(8) 0.3444(6) 0.6179(7) 0.044(3) Uani 1 1 d . D3 D 0.6519 0.3619 0.6765 0.053 Uiso 1 1 calc R N1 N 0.5672(10) 0.1454(8) 0.5358(9) 0.040(3) Uani 1 1 d . N2 N 0.7677(10) 0.1974(7) 0.6626(8) 0.034(3) Uani 1 1 d U N3 N 0.7020(10) 0.1930(8) 0.4482(8) 0.037(3) Uani 1 1 d . D3B D 0.7091 0.2388 0.4085 0.045 Uiso 1 1 d R N4 N 0.7740(11) 0.0335(8) 0.5190(8) 0.046(3) Uani 1 1 d U N5 N 0.7763(11) 0.0969(8) 0.3420(9) 0.048(3) Uani 1 1 d U C1 C 0.8324(13) 0.1054(10) 0.8315(11) 0.048(4) Uani 1 1 d U H1 H 0.8345 0.0639 0.8918 0.058 Uiso 1 1 calc R C2 C 0.9354(14) 0.1551(10) 0.8271(11) 0.050(4) Uani 1 1 d U C3 C 0.8959(12) 0.2087(9) 0.7244(11) 0.036(3) Uani 1 1 d U C4 C 0.7283(14) 0.1336(9) 0.7249(11) 0.039(3) Uani 1 1 d U C5 C 0.5975(16) 0.1053(10) 0.6468(12) 0.041(4) Uani 1 1 d . C6 C 0.6628(13) 0.2149(10) 0.5376(10) 0.040(4) Uani 1 1 d . C7 C 0.6101(14) 0.3233(10) 0.5176(11) 0.038(4) Uani 1 1 d . C8 C 0.4861(13) 0.3280(10) 0.4047(11) 0.049(4) Uani 1 1 d . H8A H 0.4995 0.3122 0.3360 0.059 Uiso 1 1 calc R H8B H 0.4526 0.3951 0.3939 0.059 Uiso 1 1 calc R C9 C 0.3879(14) 0.2548(12) 0.4085(11) 0.063(5) Uani 1 1 d . H9A H 0.3683 0.2737 0.4727 0.076 Uiso 1 1 calc R H9B H 0.3098 0.2571 0.3325 0.076 Uiso 1 1 calc R C10 C 0.4421(13) 0.1503(11) 0.4307(10) 0.055(4) Uani 1 1 d . H10A H 0.3847 0.1059 0.4425 0.065 Uiso 1 1 calc R H10B H 0.4481 0.1279 0.3600 0.065 Uiso 1 1 calc R C11 C 0.7528(12) 0.1056(10) 0.4335(11) 0.035(3) Uani 1 1 d U C12 C 0.8272(15) -0.0485(11) 0.5006(12) 0.060(4) Uani 1 1 d U H12 H 0.8494 -0.0988 0.5579 0.072 Uiso 1 1 calc R C13 C 0.8512(15) -0.0646(11) 0.4083(13) 0.066(5) Uani 1 1 d U H13 H 0.8846 -0.1245 0.3987 0.079 Uiso 1 1 calc R C14 C 0.8235(14) 0.0122(11) 0.3289(12) 0.058(4) Uani 1 1 d U H14 H 0.8387 0.0044 0.2631 0.069 Uiso 1 1 calc R O4W O 0.6152(9) 0.5492(6) 0.3817(7) 0.059(3) Uani 1 1 d . D4A D 0.5648 0.5956 0.3955 0.071 Uiso 1 1 d R D4B D 0.5635 0.5208 0.3077 0.071 Uiso 1 1 d R loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 Br1 0.0497(12) 0.0919(13) 0.0572(9) 0.0111(9) 0.0123(8) 0.0100(10) Br2 0.0539(12) 0.0681(12) 0.0687(10) 0.0073(8) 0.0315(9) -0.0010(10) O1 0.053(8) 0.062(7) 0.040(5) 0.010(5) 0.018(5) -0.011(6) O2 0.050(7) 0.024(6) 0.064(6) 0.002(4) 0.030(5) 0.003(5) O3 0.036(6) 0.058(6) 0.041(5) -0.012(5) 0.021(5) 0.002(5) N1 0.036(8) 0.036(7) 0.045(8) -0.001(6) 0.017(7) -0.007(7) N2 0.028(6) 0.046(7) 0.036(6) 0.007(5) 0.022(5) 0.007(6) N3 0.050(8) 0.032(7) 0.035(6) 0.005(5) 0.024(6) 0.013(6) N4 0.060(9) 0.041(7) 0.043(6) 0.002(5) 0.030(6) 0.008(6) N5 0.063(9) 0.053(7) 0.044(6) 0.000(6) 0.037(6) 0.008(6) C1 0.051(9) 0.055(10) 0.042(7) 0.009(6) 0.024(7) 0.014(7) C2 0.039(8) 0.049(9) 0.046(8) 0.015(6) 0.006(7) 0.016(7) C3 0.030(7) 0.034(8) 0.046(7) 0.003(6) 0.021(6) 0.001(7) C4 0.050(8) 0.041(9) 0.031(7) -0.003(6) 0.024(6) -0.012(7) C5 0.069(14) 0.024(9) 0.043(10) 0.003(7) 0.036(10) -0.014(8) C6 0.048(10) 0.046(10) 0.026(8) 0.000(7) 0.017(8) 0.025(9) C7 0.034(10) 0.043(11) 0.047(9) 0.003(7) 0.028(9) 0.012(8) C8 0.035(10) 0.058(11) 0.043(9) 0.010(7) 0.009(8) 0.000(8) C9 0.034(10) 0.099(14) 0.038(8) -0.002(8) 0.001(7) 0.021(11) C10 0.042(11) 0.080(13) 0.037(9) -0.008(8) 0.015(8) -0.004(10) C11 0.032(9) 0.037(8) 0.042(8) -0.004(6) 0.022(7) -0.005(7) C12 0.077(12) 0.051(9) 0.053(8) 0.007(7) 0.033(8) 0.019(8) C13 0.081(12) 0.056(9) 0.073(10) -0.006(7) 0.046(9) 0.029(9) C14 0.062(11) 0.065(10) 0.050(8) -0.009(7) 0.029(8) 0.006(8) O4W 0.069(8) 0.045(6) 0.048(5) -0.013(4) 0.016(5) 0.006(5) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Br Br -0.2901 2.4595 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle C7 O2 D2 109.5 C7 O3 D3 109.5 C5 N1 C10 127.3(13) C5 N1 C6 113.8(11) C10 N1 C6 116.3(11) C3 N2 C4 109.7(10) C3 N2 C6 137.9(11) C4 N2 C6 110.6(11) C11 N3 C6 127.3(11) C11 N3 D3B 112.6 C6 N3 D3B 119.0 C12 N4 C11 111.9(12) C11 N5 C14 117.9(12) C4 C1 C2 103.4(12) C4 C1 H1 128.3 C2 C1 H1 128.3 C3 C2 C1 111.6(12) C3 C2 Br1 125.1(12) C1 C2 Br1 123.3(10) C2 C3 N2 106.1(12) C2 C3 Br2 129.7(11) N2 C3 Br2 124.1(9) N2 C4 C1 109.2(13) N2 C4 C5 108.9(11) C1 C4 C5 140.6(13) O1 C5 N1 123.8(14) O1 C5 C4 130.5(13) N1 C5 C4 105.6(13) N3 C6 N1 113.2(11) N3 C6 N2 111.6(11) N1 C6 N2 100.2(10) N3 C6 C7 108.6(11) N1 C6 C7 110.1(11) N2 C6 C7 113.0(10) O2 C7 O3 112.7(10) O2 C7 C8 113.5(11) O3 C7 C8 107.6(11) O2 C7 C6 107.2(11) O3 C7 C6 105.9(10) C8 C7 C6 109.7(11) C7 C8 C9 111.7(11) C7 C8 H8A 109.3 C9 C8 H8A 109.3 C7 C8 H8B 109.3 C9 C8 H8B 109.3 H8A C8 H8B 107.9 C10 C9 C8 109.5(12) C10 C9 H9A 109.8 C8 C9 H9A 109.8 C10 C9 H9B 109.8 C8 C9 H9B 109.8 H9A C9 H9B 108.2 N1 C10 C9 112.0(11) N1 C10 H10A 109.2 C9 C10 H10A 109.2 N1 C10 H10B 109.2 C9 C10 H10B 109.2 H10A C10 H10B 107.9 N5 C11 N3 118.9(12) N5 C11 N4 125.6(13) N3 C11 N4 115.5(12) C13 C12 N4 126.4(13) C13 C12 H12 116.8 N4 C12 H12 116.8 C12 C13 C14 115.7(14) C12 C13 H13 122.2 C14 C13 H13 122.2 N5 C14 C13 122.5(15) N5 C14 H14 118.8 C13 C14 H14 118.8 D4A O4W D4B 106.2 loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance Br1 C2 1.899(13) Br2 C3 1.854(13) O1 C5 1.202(15) O2 C7 1.375(15) O2 D2 0.8200 O3 C7 1.445(15) O3 D3 0.8200 N1 C5 1.372(15) N1 C10 1.454(14) N1 C6 1.464(17) N2 C3 1.358(15) N2 C4 1.381(15) N2 C6 1.493(14) N3 C11 1.372(15) N3 C6 1.433(15) N3 D3B 0.8203 N4 C12 1.344(16) N4 C11 1.378(15) N5 C11 1.307(15) N5 C14 1.314(16) C1 C4 1.382(17) C1 C2 1.420(19) C1 H1 0.9300 C2 C3 1.353(16) C4 C5 1.447(19) C6 C7 1.560(17) C7 C8 1.491(15) C8 C9 1.546(18) C8 H8A 0.9700 C8 H8B 0.9700 C9 C10 1.516(18) C9 H9A 0.9700 C9 H9B 0.9700 C10 H10A 0.9700 C10 H10B 0.9700 C12 C13 1.333(19) C12 H12 0.9300 C13 C14 1.364(19) C13 H13 0.9300 C14 H14 0.9300 O4W D4A 0.9372 O4W D4B 0.9205 loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_site_symmetry_A O3 D3 N5 0.82 1.98 2.770(13) 161.9 4_566 O2 D2 O4W 0.82 1.95 2.680(11) 148.3 . O4W D4A O3 0.94 1.90 2.789(13) 157.9 3_666 O4W D4B O1 0.92 1.91 2.778(12) 156.1 4_565 loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion C4 C1 C2 C3 -0.5(17) C4 C1 C2 Br1 -178.7(9) C1 C2 C3 N2 1.7(16) Br1 C2 C3 N2 179.9(9) C1 C2 C3 Br2 178.4(10) Br1 C2 C3 Br2 -3(2) C4 N2 C3 C2 -2.3(14) C6 N2 C3 C2 -165.0(13) C4 N2 C3 Br2 -179.2(9) C6 N2 C3 Br2 18(2) C3 N2 C4 C1 2.0(14) C6 N2 C4 C1 169.7(10) C3 N2 C4 C5 -167.7(11) C6 N2 C4 C5 0.0(14) C2 C1 C4 N2 -0.9(15) C2 C1 C4 C5 163.6(18) C10 N1 C5 O1 8(2) C6 N1 C5 O1 168.9(14) C10 N1 C5 C4 -170.6(13) C6 N1 C5 C4 -10.2(15) N2 C4 C5 O1 -173.0(15) C1 C4 C5 O1 22(3) N2 C4 C5 N1 6.0(15) C1 C4 C5 N1 -158.6(17) C11 N3 C6 N1 -56.9(16) C11 N3 C6 N2 55.2(17) C11 N3 C6 C7 -179.5(11) C5 N1 C6 N3 128.8(11) C10 N1 C6 N3 -68.5(14) C5 N1 C6 N2 9.8(14) C10 N1 C6 N2 172.5(10) C5 N1 C6 C7 -109.4(12) C10 N1 C6 C7 53.3(14) C3 N2 C6 N3 37(2) C4 N2 C6 N3 -125.6(12) C3 N2 C6 N1 157.0(13) C4 N2 C6 N1 -5.6(13) C3 N2 C6 C7 -85.9(18) C4 N2 C6 C7 111.5(13) N3 C6 C7 O2 -53.2(13) N1 C6 C7 O2 -177.7(9) N2 C6 C7 O2 71.2(14) N3 C6 C7 O3 -173.8(10) N1 C6 C7 O3 61.7(12) N2 C6 C7 O3 -49.3(15) N3 C6 C7 C8 70.4(15) N1 C6 C7 C8 -54.1(14) N2 C6 C7 C8 -165.1(12) O2 C7 C8 C9 177.2(12) O3 C7 C8 C9 -57.3(15) C6 C7 C8 C9 57.3(16) C7 C8 C9 C10 -56.6(15) C5 N1 C10 C9 106.5(16) C6 N1 C10 C9 -53.5(16) C8 C9 C10 N1 52.3(15) C14 N5 C11 N3 -179.2(12) C14 N5 C11 N4 0(2) C6 N3 C11 N5 176.0(12) C6 N3 C11 N4 -3.7(18) C12 N4 C11 N5 2.2(19) C12 N4 C11 N3 -178.1(11) C11 N4 C12 C13 -4(2) N4 C12 C13 C14 3(3) C11 N5 C14 C13 -2(2) C12 C13 C14 N5 0(2)