#------------------------------------------------------------------------------ #$Date: 2014-04-20 01:34:45 +0300 (Sun, 20 Apr 2014) $ #$Revision: 110790 $ #$URL: file:///home/coder/svn-repositories/cod/cif/1/51/49/1514932.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_1514932 loop_ _publ_author_name 'Das, Sudipta' 'Sahana, Animesh' 'Banerjee, Arnab' 'Lohar, Sisir' 'Guha, Subarna' 'Matalobos, Jes\'us Sanmart\'in' 'Das, Debasis' _publ_section_title ; Thiophene anchored naphthalene derivative: Cr3+ selective turn-on fluorescent probe for living cell imaging ; _journal_issue 8 _journal_name_full 'Analytical Methods' _journal_page_first 2254 _journal_paper_doi 10.1039/c2ay25384d _journal_volume 4 _journal_year 2012 _chemical_formula_sum 'C15 H11 N S' _chemical_formula_weight 237.31 _chemical_name_systematic ; ? ; _space_group_IT_number 41 _symmetry_space_group_name_Hall 'A 2 -2ab' _symmetry_space_group_name_H-M 'A b a 2' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 90.00 _cell_angle_beta 90.00 _cell_angle_gamma 90.00 _cell_formula_units_Z 8 _cell_length_a 10.7541(18) _cell_length_b 20.966(4) _cell_length_c 10.5543(16) _cell_measurement_temperature 100(2) _cell_volume 2379.7(7) _computing_structure_refinement 'SHELXL-97 (Sheldrick, 2008)' _diffrn_ambient_temperature 100(2) _diffrn_measured_fraction_theta_full 1.000 _diffrn_measured_fraction_theta_max 1.000 _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0000 _diffrn_reflns_av_sigmaI/netI 0.0279 _diffrn_reflns_limit_h_max 13 _diffrn_reflns_limit_h_min 0 _diffrn_reflns_limit_k_max 26 _diffrn_reflns_limit_k_min 0 _diffrn_reflns_limit_l_max 13 _diffrn_reflns_limit_l_min -12 _diffrn_reflns_number 2392 _diffrn_reflns_theta_full 26.37 _diffrn_reflns_theta_max 26.37 _diffrn_reflns_theta_min 1.94 _exptl_absorpt_coefficient_mu 0.246 _exptl_absorpt_correction_T_max 0.9830 _exptl_absorpt_correction_T_min 0.9146 _exptl_crystal_density_diffrn 1.325 _exptl_crystal_density_method 'not measured' _exptl_crystal_F_000 992 _exptl_crystal_size_max 0.37 _exptl_crystal_size_mid 0.36 _exptl_crystal_size_min 0.07 _refine_diff_density_max 0.177 _refine_diff_density_min -0.210 _refine_diff_density_rms 0.040 _refine_ls_abs_structure_details 'Flack H D (1983), Acta Cryst. A39, 876-881' _refine_ls_abs_structure_Flack 0.00(7) _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.057 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 155 _refine_ls_number_reflns 2392 _refine_ls_number_restraints 1 _refine_ls_restrained_S_all 1.056 _refine_ls_R_factor_all 0.0339 _refine_ls_R_factor_gt 0.0299 _refine_ls_shift/su_max 0.014 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0388P)^2^+0.8275P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.0695 _refine_ls_wR_factor_ref 0.0717 _reflns_number_gt 2227 _reflns_number_total 2392 _reflns_threshold_expression >2\s(I) _[local]_cod_data_source_file c2ay25384d.txt _[local]_cod_data_source_block be47jea1n _cod_database_code 1514932 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, -y, z' '-x+1/2, y+1/2, z' 'x+1/2, -y+1/2, z' 'x, y+1/2, z+1/2' '-x, -y+1/2, z+1/2' '-x+1/2, y+1, z+1/2' 'x+1/2, -y+1, z+1/2' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_symmetry_multiplicity _atom_site_calc_flag _atom_site_refinement_flags C1 C 0.95964(16) 0.83014(8) 0.97874(16) 0.0180(4) Uani 1 1 d . C2 C 0.98177(18) 0.77330(9) 0.91739(18) 0.0218(4) Uani 1 1 d . H2 H 1.0545 0.7495 0.9369 0.026 Uiso 1 1 calc R C3 C 0.89801(19) 0.75016(9) 0.8264(2) 0.0262(4) Uani 1 1 d . H3 H 0.9156 0.7113 0.7836 0.031 Uiso 1 1 calc R C4 C 0.79145(17) 0.78282(9) 0.79855(19) 0.0238(4) Uani 1 1 d . H4 H 0.7368 0.7671 0.7351 0.029 Uiso 1 1 calc R C5 C 0.76176(17) 0.83995(9) 0.86359(18) 0.0197(4) Uani 1 1 d . C6 C 0.65008(17) 0.87346(9) 0.84037(18) 0.0220(4) Uani 1 1 d . H6 H 0.5940 0.8582 0.7778 0.026 Uiso 1 1 calc R C7 C 0.62168(18) 0.92727(8) 0.90644(19) 0.0232(4) Uani 1 1 d . H7 H 0.5457 0.9489 0.8903 0.028 Uiso 1 1 calc R C8 C 0.70447(17) 0.95119(10) 0.99884(19) 0.0221(4) Uani 1 1 d . H8 H 0.6834 0.9885 1.0451 0.027 Uiso 1 1 calc R C9 C 0.81500(19) 0.92084(9) 1.0222(2) 0.0200(4) Uani 1 1 d . H9 H 0.8711 0.9380 1.0828 0.024 Uiso 1 1 calc R C10 C 0.84625(16) 0.86390(8) 0.95646(17) 0.0168(4) Uani 1 1 d . C11 C 1.16051(16) 0.85138(9) 1.04536(17) 0.0190(4) Uani 1 1 d . H11 H 1.1869 0.8280 0.9731 0.023 Uiso 1 1 calc R C12 C 1.25344(18) 0.87896(8) 1.12763(17) 0.0188(4) Uani 1 1 d . C13 C 1.38038(17) 0.87373(9) 1.11697(19) 0.0220(4) Uani 1 1 d . H13 H 1.4208 0.8488 1.0541 0.026 Uiso 1 1 calc R C14 C 1.44395(17) 0.90947(9) 1.20953(19) 0.0239(4) Uani 1 1 d . H14 H 1.5320 0.9110 1.2163 0.029 Uiso 1 1 calc R C15 C 1.36590(18) 0.94141(10) 1.28795(18) 0.0252(5) Uani 1 1 d . H15 H 1.3931 0.9680 1.3554 0.030 Uiso 1 1 calc R N1 N 1.04382(14) 0.85737(7) 1.06643(14) 0.0183(3) Uani 1 1 d . S1 S 1.21213(4) 0.92842(2) 1.25150(5) 0.02205(12) Uani 1 1 d . loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 C1 0.0169(9) 0.0214(9) 0.0158(9) 0.0008(7) 0.0013(7) -0.0030(7) C2 0.0195(9) 0.0205(9) 0.0254(10) -0.0021(8) 0.0015(8) 0.0006(7) C3 0.0265(10) 0.0238(10) 0.0282(11) -0.0081(8) 0.0035(8) -0.0025(8) C4 0.0224(10) 0.0268(10) 0.0222(10) -0.0037(8) -0.0016(8) -0.0065(8) C5 0.0194(9) 0.0223(9) 0.0174(9) 0.0017(7) 0.0022(7) -0.0052(7) C6 0.0209(9) 0.0244(10) 0.0207(10) 0.0038(7) -0.0037(7) -0.0064(8) C7 0.0191(10) 0.0226(10) 0.0279(11) 0.0060(8) -0.0015(8) 0.0004(7) C8 0.0237(10) 0.0190(9) 0.0236(10) -0.0020(8) 0.0000(8) 0.0017(8) C9 0.0211(10) 0.0216(10) 0.0173(9) -0.0001(7) -0.0002(8) -0.0031(8) C10 0.0179(9) 0.0184(9) 0.0141(9) 0.0013(7) 0.0021(7) -0.0035(7) C11 0.0202(9) 0.0207(9) 0.0161(9) 0.0007(7) 0.0003(8) 0.0001(7) C12 0.0208(8) 0.0190(9) 0.0166(9) 0.0032(7) -0.0001(7) 0.0010(7) C13 0.0211(9) 0.0226(9) 0.0224(10) 0.0019(7) -0.0009(8) -0.0005(7) C14 0.0160(9) 0.0294(10) 0.0262(10) 0.0046(8) -0.0018(8) 0.0008(8) C15 0.0238(10) 0.0300(10) 0.0219(11) 0.0037(8) -0.0041(8) -0.0096(8) N1 0.0201(8) 0.0186(7) 0.0163(8) 0.0023(6) -0.0017(6) -0.0004(6) S1 0.0202(2) 0.0269(2) 0.0191(2) -0.0016(2) 0.0017(2) -0.00265(17) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' S S 0.1246 0.1234 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle C2 C1 N1 123.11(16) C2 C1 C10 119.91(16) N1 C1 C10 116.98(15) C1 C2 C3 120.67(17) C1 C2 H2 119.7 C3 C2 H2 119.7 C4 C3 C2 120.81(17) C4 C3 H3 119.6 C2 C3 H3 119.6 C3 C4 C5 120.54(18) C3 C4 H4 119.7 C5 C4 H4 119.7 C6 C5 C4 121.86(17) C6 C5 C10 119.02(16) C4 C5 C10 119.11(17) C7 C6 C5 120.94(18) C7 C6 H6 119.5 C5 C6 H6 119.5 C6 C7 C8 120.43(18) C6 C7 H7 119.8 C8 C7 H7 119.8 C9 C8 C7 120.41(18) C9 C8 H8 119.8 C7 C8 H8 119.8 C8 C9 C10 120.47(19) C8 C9 H9 119.8 C10 C9 H9 119.8 C9 C10 C5 118.70(16) C9 C10 C1 122.50(17) C5 C10 C1 118.80(16) N1 C11 C12 122.30(17) N1 C11 H11 118.8 C12 C11 H11 118.8 C13 C12 C11 127.31(17) C13 C12 S1 111.43(14) C11 C12 S1 121.16(14) C12 C13 C14 112.53(18) C12 C13 H13 123.7 C14 C13 H13 123.7 C15 C14 C13 112.69(17) C15 C14 H14 123.7 C13 C14 H14 123.7 C14 C15 S1 112.38(15) C14 C15 H15 123.8 S1 C15 H15 123.8 C11 N1 C1 118.28(15) C15 S1 C12 90.98(10) loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance C1 C2 1.377(3) C1 N1 1.415(2) C1 C10 1.429(2) C2 C3 1.403(3) C2 H2 0.9500 C3 C4 1.367(3) C3 H3 0.9500 C4 C5 1.417(3) C4 H4 0.9500 C5 C6 1.413(3) C5 C10 1.428(3) C6 C7 1.361(3) C6 H6 0.9500 C7 C8 1.413(3) C7 H7 0.9500 C8 C9 1.371(3) C8 H8 0.9500 C9 C10 1.421(3) C9 H9 0.9500 C11 N1 1.281(2) C11 C12 1.445(3) C11 H11 0.9500 C12 C13 1.374(3) C12 S1 1.7268(19) C13 C14 1.408(3) C13 H13 0.9500 C14 C15 1.356(3) C14 H14 0.9500 C15 S1 1.7194(19) C15 H15 0.9500 loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion N1 C1 C2 C3 -176.66(17) C10 C1 C2 C3 4.4(3) C1 C2 C3 C4 -1.4(3) C2 C3 C4 C5 -1.7(3) C3 C4 C5 C6 -177.54(19) C3 C4 C5 C10 1.6(3) C4 C5 C6 C7 178.12(18) C10 C5 C6 C7 -1.0(3) C5 C6 C7 C8 0.8(3) C6 C7 C8 C9 0.6(3) C7 C8 C9 C10 -1.8(3) C8 C9 C10 C5 1.5(3) C8 C9 C10 C1 -179.21(17) C6 C5 C10 C9 -0.1(3) C4 C5 C10 C9 -179.29(16) C6 C5 C10 C1 -179.42(16) C4 C5 C10 C1 1.4(3) C2 C1 C10 C9 176.34(17) N1 C1 C10 C9 -2.7(2) C2 C1 C10 C5 -4.4(3) N1 C1 C10 C5 176.61(15) N1 C11 C12 C13 177.49(18) N1 C11 C12 S1 -6.4(3) C11 C12 C13 C14 176.79(17) S1 C12 C13 C14 0.3(2) C12 C13 C14 C15 -0.4(2) C13 C14 C15 S1 0.3(2) C12 C11 N1 C1 178.34(15) C2 C1 N1 C11 36.3(2) C10 C1 N1 C11 -144.76(17) C14 C15 S1 C12 -0.10(15) C13 C12 S1 C15 -0.14(14) C11 C12 S1 C15 -176.84(16)