#------------------------------------------------------------------------------ #$Date: 2016-02-18 17:37:37 +0200 (Thu, 18 Feb 2016) $ #$Revision: 176729 $ #$URL: file:///home/coder/svn-repositories/cod/cif/1/51/55/1515577.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_1515577 loop_ _publ_author_name 'Royzen, Maksim' 'Taylor, Michael T.' 'Deangelis, Andrew' 'Fox, Joseph M.' _publ_section_title ; Total Synthesis of Hyacinthacine A2: Stereocontrolled 5-aza-cyclooctene Photoisomerization and Transannular Hydroamination with Planar-to-Point Chirality Transfer. ; _journal_issue 11 _journal_name_full 'Chemical science (Royal Society of Chemistry : 2010)' _journal_page_first 2162 _journal_page_last 2165 _journal_paper_doi 10.1039/C1SC00442E _journal_volume 2 _journal_year 2011 _chemical_formula_sum 'C13 H18 F3 N O4' _chemical_formula_weight 309.28 _chemical_name_systematic ; ? ; _space_group_IT_number 4 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall 'P 2yb' _symmetry_space_group_name_H-M 'P 1 21 1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 90.00 _cell_angle_beta 102.084(6) _cell_angle_gamma 90.00 _cell_formula_units_Z 2 _cell_length_a 9.548(4) _cell_length_b 5.573(2) _cell_length_c 13.512(5) _cell_measurement_reflns_used 992 _cell_measurement_temperature 200(2) _cell_measurement_theta_max 28.03 _cell_measurement_theta_min 2.18 _cell_volume 703.1(5) _computing_cell_refinement 'SAINT (Bruker, 2002)' _computing_data_collection 'SMART (Bruker, 2002)' _computing_data_reduction SAINT _computing_molecular_graphics 'SHELXTL (Sheldrick, 2001)' _computing_publication_material 'SHELXTL (Sheldrick, 2001)' _computing_structure_refinement 'SHELXL-97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS-97 (Sheldrick, 1990)' _diffrn_ambient_temperature 200(2) _diffrn_detector_area_resol_mean 836.6 _diffrn_measured_fraction_theta_full 0.999 _diffrn_measured_fraction_theta_max 0.998 _diffrn_measurement_device_type 'Bruker AXS APEX diffractometer' _diffrn_measurement_method \w _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0204 _diffrn_reflns_av_sigmaI/netI 0.0259 _diffrn_reflns_limit_h_max 12 _diffrn_reflns_limit_h_min -12 _diffrn_reflns_limit_k_max 7 _diffrn_reflns_limit_k_min -7 _diffrn_reflns_limit_l_max 18 _diffrn_reflns_limit_l_min -18 _diffrn_reflns_number 8941 _diffrn_reflns_theta_full 25.00 _diffrn_reflns_theta_max 28.28 _diffrn_reflns_theta_min 2.18 _diffrn_standards_decay_% 1 _diffrn_standards_interval_count 0 _diffrn_standards_interval_time 0 _diffrn_standards_number 0 _exptl_absorpt_coefficient_mu 0.132 _exptl_absorpt_correction_T_max 0.9937 _exptl_absorpt_correction_T_min 0.9622 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details 'SADABS (Sheldrick, 2003)' _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.461 _exptl_crystal_density_method 'not measured' _exptl_crystal_description needle _exptl_crystal_F_000 324 _exptl_crystal_size_max 0.29 _exptl_crystal_size_mid 0.09 _exptl_crystal_size_min 0.05 _refine_diff_density_max 0.299 _refine_diff_density_min -0.321 _refine_diff_density_rms 0.043 _refine_ls_abs_structure_details 'Flack H D (1983), Acta Cryst. A39, 876-881' _refine_ls_abs_structure_Flack 0.0(7) _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.041 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 192 _refine_ls_number_reflns 3485 _refine_ls_number_restraints 1 _refine_ls_restrained_S_all 1.041 _refine_ls_R_factor_all 0.0409 _refine_ls_R_factor_gt 0.0376 _refine_ls_shift/su_max 0.001 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0610P)^2^+0.0819P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.0990 _refine_ls_wR_factor_ref 0.1025 _reflns_number_gt 3258 _reflns_number_total 3485 _reflns_threshold_expression >2sigma(I) _cod_data_source_file c1sc00442e.txt _cod_data_source_block joef080 _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Monoclinic' changed to 'monoclinic' according to /usr/data/users/saulius/automatic-downloads/retrospective/RSC/lib/dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.2 from 2011-04-26. Automatic conversion script Id: cif_fix_values 2281 2013-09-26 08:29:07Z andrius ; _cod_original_cell_volume 703.0(5) _cod_original_sg_symbol_H-M P2(1) _cod_database_code 1515577 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y+1/2, -z' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_symmetry_multiplicity _atom_site_calc_flag _atom_site_refinement_flags N1 N 0.16828(14) 0.3131(3) 0.83560(10) 0.0224(3) Uani 1 1 d . F1 F 0.28337(12) -0.0794(3) 1.04727(8) 0.0437(3) Uani 1 1 d . F2 F 0.29548(15) 0.3054(3) 1.05838(9) 0.0518(4) Uani 1 1 d . F3 F 0.42194(11) 0.1131(3) 0.96943(8) 0.0395(3) Uani 1 1 d . O1 O 0.07480(13) -0.0192(2) 0.89693(9) 0.0296(3) Uani 1 1 d . O2 O -0.12152(11) 0.1658(2) 0.60710(8) 0.0228(2) Uani 1 1 d . O3 O -0.21167(12) 0.4321(2) 0.71052(9) 0.0262(3) Uani 1 1 d . O4 O 0.09995(12) -0.1934(2) 0.58710(9) 0.0266(3) Uani 1 1 d . H4A H 0.1090 -0.2132 0.5271 0.040 Uiso 1 1 calc R C1 C 0.29357(19) 0.1209(4) 0.99554(12) 0.0325(4) Uani 1 1 d . C2 C 0.16684(17) 0.1349(3) 0.90253(11) 0.0246(3) Uani 1 1 d . C3 C 0.28331(18) 0.4953(3) 0.84203(13) 0.0282(3) Uani 1 1 d . H3A H 0.3311 0.5167 0.9139 0.034 Uiso 1 1 calc R H3B H 0.2395 0.6507 0.8170 0.034 Uiso 1 1 calc R C4 C 0.39812(17) 0.4278(3) 0.78026(13) 0.0288(3) Uani 1 1 d . H4B H 0.4546 0.5708 0.7694 0.035 Uiso 1 1 calc R H4C H 0.4642 0.3044 0.8163 0.035 Uiso 1 1 calc R C5 C 0.31642(17) 0.3323(3) 0.68138(12) 0.0261(3) Uani 1 1 d . H5A H 0.3007 0.4307 0.6227 0.031 Uiso 1 1 calc R C6 C 0.26576(15) 0.1084(3) 0.67604(11) 0.0226(3) Uani 1 1 d . H6A H 0.3222 -0.0165 0.7121 0.027 Uiso 1 1 calc R C7 C 0.12124(16) 0.0535(3) 0.61386(11) 0.0211(3) Uani 1 1 d . H7A H 0.1033 0.1542 0.5512 0.025 Uiso 1 1 calc R C8 C 0.00952(15) 0.1153(3) 0.67867(10) 0.0197(3) Uani 1 1 d . H8A H -0.0048 -0.0276 0.7202 0.024 Uiso 1 1 calc R C9 C -0.24310(18) 0.2239(3) 0.65032(12) 0.0243(3) Uani 1 1 d . C10 C -0.08829(17) 0.4092(3) 0.79052(13) 0.0256(3) Uani 1 1 d . H10A H -0.1063 0.2863 0.8393 0.031 Uiso 1 1 calc R H10B H -0.0693 0.5638 0.8269 0.031 Uiso 1 1 calc R C11 C 0.04333(16) 0.3365(3) 0.74812(11) 0.0218(3) Uani 1 1 d . H11A H 0.0647 0.4726 0.7054 0.026 Uiso 1 1 calc R C12 C -0.36092(17) 0.2952(4) 0.56185(13) 0.0320(4) Uani 1 1 d . H12A H -0.3299 0.4342 0.5275 0.048 Uiso 1 1 calc R H12B H -0.4473 0.3368 0.5865 0.048 Uiso 1 1 calc R H12C H -0.3818 0.1608 0.5143 0.048 Uiso 1 1 calc R C13 C -0.28630(19) 0.0118(3) 0.70857(14) 0.0299(4) Uani 1 1 d . H13A H -0.2094 -0.0231 0.7672 0.045 Uiso 1 1 calc R H13B H -0.3030 -0.1291 0.6643 0.045 Uiso 1 1 calc R H13C H -0.3742 0.0512 0.7317 0.045 Uiso 1 1 calc R loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 N1 0.0193(6) 0.0257(6) 0.0218(6) -0.0025(5) 0.0033(5) 0.0019(5) F1 0.0357(6) 0.0654(8) 0.0278(5) 0.0171(6) 0.0018(4) 0.0032(6) F2 0.0529(7) 0.0703(9) 0.0285(6) -0.0179(6) -0.0001(5) 0.0030(7) F3 0.0242(5) 0.0584(8) 0.0346(5) 0.0095(6) 0.0034(4) 0.0050(5) O1 0.0305(6) 0.0340(7) 0.0241(5) 0.0030(5) 0.0050(5) 0.0003(5) O2 0.0165(5) 0.0318(6) 0.0202(5) 0.0016(5) 0.0042(4) 0.0021(5) O3 0.0216(5) 0.0249(6) 0.0324(6) 0.0009(5) 0.0062(4) 0.0056(5) O4 0.0290(6) 0.0293(6) 0.0226(5) -0.0066(5) 0.0079(4) -0.0001(5) C1 0.0292(8) 0.0460(11) 0.0212(7) 0.0007(8) 0.0028(6) 0.0030(8) C2 0.0233(7) 0.0313(8) 0.0198(7) -0.0035(6) 0.0058(5) 0.0052(7) C3 0.0236(7) 0.0270(8) 0.0336(8) -0.0060(7) 0.0048(6) -0.0018(7) C4 0.0207(7) 0.0312(8) 0.0346(8) -0.0018(8) 0.0058(6) -0.0031(7) C5 0.0208(7) 0.0326(8) 0.0261(7) 0.0029(7) 0.0079(6) 0.0010(7) C6 0.0186(7) 0.0280(8) 0.0220(7) -0.0004(6) 0.0060(5) 0.0056(6) C7 0.0187(7) 0.0260(8) 0.0190(6) -0.0002(6) 0.0044(5) 0.0025(6) C8 0.0182(6) 0.0232(7) 0.0176(6) 0.0013(6) 0.0038(5) 0.0036(6) C9 0.0210(7) 0.0260(8) 0.0268(7) 0.0033(6) 0.0072(6) 0.0032(6) C10 0.0216(7) 0.0295(8) 0.0262(7) -0.0035(7) 0.0060(6) 0.0059(7) C11 0.0188(7) 0.0242(7) 0.0224(7) -0.0001(6) 0.0044(5) 0.0021(6) C12 0.0202(8) 0.0437(10) 0.0321(8) 0.0049(8) 0.0051(6) 0.0043(8) C13 0.0269(8) 0.0272(8) 0.0393(9) 0.0061(7) 0.0157(7) 0.0032(7) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' F F 0.0171 0.0103 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle C2 N1 C3 125.24(14) C2 N1 C11 118.42(14) C3 N1 C11 116.32(14) C8 O2 C9 115.61(11) C9 O3 C10 113.85(13) F2 C1 F1 107.80(14) F2 C1 F3 107.51(16) F1 C1 F3 106.33(16) F2 C1 C2 112.44(16) F1 C1 C2 109.66(15) F3 C1 C2 112.80(13) O1 C2 N1 125.92(15) O1 C2 C1 116.36(15) N1 C2 C1 117.72(15) N1 C3 C4 113.51(15) C5 C4 C3 105.69(13) C6 C5 C4 119.73(15) C5 C6 C7 120.35(15) O4 C7 C6 114.04(13) O4 C7 C8 106.17(12) C6 C7 C8 107.51(12) O2 C8 C11 107.13(12) O2 C8 C7 105.51(11) C11 C8 C7 116.06(12) O3 C9 O2 109.02(13) O3 C9 C12 105.80(14) O2 C9 C12 105.52(13) O3 C9 C13 112.80(14) O2 C9 C13 111.29(13) C12 C9 C13 112.02(15) O3 C10 C11 110.49(13) N1 C11 C10 107.84(12) N1 C11 C8 116.16(13) C10 C11 C8 110.70(13) loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance N1 C2 1.345(2) N1 C3 1.485(2) N1 C11 1.4990(19) F1 C1 1.332(2) F2 C1 1.331(2) F3 C1 1.345(2) O1 C2 1.220(2) O2 C8 1.4398(17) O2 C9 1.4413(19) O3 C9 1.413(2) O3 C10 1.4281(19) O4 C7 1.426(2) C1 C2 1.553(2) C3 C4 1.557(2) C4 C5 1.497(2) C5 C6 1.334(3) C6 C7 1.489(2) C7 C8 1.554(2) C8 C11 1.542(2) C9 C12 1.513(2) C9 C13 1.524(2) C10 C11 1.540(2) loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_site_symmetry_A O4 H4A O2 0.84 1.96 2.7875(18) 167.3 2_546 loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion C3 N1 C2 O1 -178.17(15) C11 N1 C2 O1 3.3(2) C3 N1 C2 C1 1.5(2) C11 N1 C2 C1 -177.04(13) F2 C1 C2 O1 -113.28(19) F1 C1 C2 O1 6.6(2) F3 C1 C2 O1 124.93(18) F2 C1 C2 N1 67.0(2) F1 C1 C2 N1 -173.07(14) F3 C1 C2 N1 -54.8(2) C2 N1 C3 C4 94.58(19) C11 N1 C3 C4 -86.86(17) N1 C3 C4 C5 43.1(2) C3 C4 C5 C6 -78.4(2) C4 C5 C6 C7 140.02(15) C5 C6 C7 O4 159.97(14) C5 C6 C7 C8 -82.61(18) C9 O2 C8 C11 -56.97(16) C9 O2 C8 C7 178.80(13) O4 C7 C8 O2 -82.91(14) C6 C7 C8 O2 154.65(13) O4 C7 C8 C11 158.67(12) C6 C7 C8 C11 36.23(18) C10 O3 C9 O2 -58.48(16) C10 O3 C9 C12 -171.54(13) C10 O3 C9 C13 65.67(17) C8 O2 C9 O3 60.71(16) C8 O2 C9 C12 173.95(14) C8 O2 C9 C13 -64.32(18) C9 O3 C10 C11 55.91(18) C2 N1 C11 C10 67.11(18) C3 N1 C11 C10 -111.56(15) C2 N1 C11 C8 -57.77(18) C3 N1 C11 C8 123.57(15) O3 C10 C11 N1 -179.43(14) O3 C10 C11 C8 -51.35(18) O2 C8 C11 N1 173.99(12) C7 C8 C11 N1 -68.49(17) O2 C8 C11 C10 50.58(16) C7 C8 C11 C10 168.11(13)