#------------------------------------------------------------------------------ #$Date: 2016-02-13 14:50:18 +0200 (Sat, 13 Feb 2016) $ #$Revision: 176428 $ #$URL: file:///home/coder/svn-repositories/cod/cif/1/51/99/1519953.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_1519953 loop_ _publ_author_name 'Callear, Samantha K.' 'Hursthouse, Michael B.' _publ_section_title ; 1-Methylpiperazine oxalate dihydrate ; _journal_name_full 'Crystal Structure Report Archive' _journal_page_first 566 _journal_year 2008 _chemical_formula_sum 'C7 H18 N2 O6' _chemical_formula_weight 226.23 _chemical_name_systematic ; 1-Methylpiperazinium oxalate dihydrate ; _space_group_IT_number 4 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall 'P 2yb' _symmetry_space_group_name_H-M 'P 1 21 1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _cell_angle_alpha 90.00 _cell_angle_beta 104.266(4) _cell_angle_gamma 90.00 _cell_formula_units_Z 2 _cell_length_a 8.2165(4) _cell_length_b 7.0534(5) _cell_length_c 10.0677(7) _cell_measurement_reflns_used 1618 _cell_measurement_temperature 120(2) _cell_measurement_theta_max 23.26 _cell_measurement_theta_min 1.00 _cell_volume 565.47(6) _computing_cell_refinement 'DENZO (Otwinowski & Minor, 1997) & COLLECT (Hooft, R.W.W., 1998)' _computing_data_collection 'COLLECT (Hooft, R.W.W., 1998)' _computing_data_reduction 'DENZO (Otwinowski & Minor, 1997) & COLLECT (Hooft, R.W.W., 1998)' _computing_structure_refinement 'SHELXL-97 (Sheldrick, 1997)' _diffrn_ambient_temperature 120(2) _diffrn_detector_area_resol_mean 9.091 _diffrn_measured_fraction_theta_full 0.823 _diffrn_measured_fraction_theta_max 0.823 _diffrn_measurement_device_type 'Bruker-Nonius 95mm CCD camera on \k-goniostat' _diffrn_measurement_method '\f & \w scans' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'Bruker-Nonius FR591 rotating anode' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0657 _diffrn_reflns_av_sigmaI/netI 0.0537 _diffrn_reflns_limit_h_max 9 _diffrn_reflns_limit_h_min -9 _diffrn_reflns_limit_k_max 7 _diffrn_reflns_limit_k_min -7 _diffrn_reflns_limit_l_max 11 _diffrn_reflns_limit_l_min -11 _diffrn_reflns_number 7091 _diffrn_reflns_theta_full 23.35 _diffrn_reflns_theta_max 23.35 _diffrn_reflns_theta_min 3.56 _exptl_absorpt_coefficient_mu 0.115 _exptl_absorpt_correction_T_max 0.9966 _exptl_absorpt_correction_T_min 0.9773 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details 'SADABS V2.10 (Sheldrick, G.M., 2003)' _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.329 _exptl_crystal_density_method 'not measured' _exptl_crystal_description plate _exptl_crystal_F_000 244 _exptl_crystal_size_max 0.20 _exptl_crystal_size_mid 0.11 _exptl_crystal_size_min 0.03 _refine_diff_density_max 0.155 _refine_diff_density_min -0.167 _refine_diff_density_rms 0.038 _refine_ls_abs_structure_details 'Flack H D (1983), Acta Cryst. A39, 876-881' _refine_ls_abs_structure_Flack 10(10) _refine_ls_extinction_coef 0.058(12) _refine_ls_extinction_expression Fc^*^=kFc[1+0.001xFc^2^\l^3^/sin(2\q)]^-1/4^ _refine_ls_extinction_method SHELXL _refine_ls_goodness_of_fit_ref 1.063 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 155 _refine_ls_number_reflns 738 _refine_ls_number_restraints 7 _refine_ls_restrained_S_all 1.059 _refine_ls_R_factor_all 0.0462 _refine_ls_R_factor_gt 0.0344 _refine_ls_shift/su_max 0.001 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0495P)^2^+0.0000P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.0761 _refine_ls_wR_factor_ref 0.0788 _reflns_number_gt 641 _reflns_number_total 738 _reflns_threshold_expression >2sigma(I) _cod_data_source_file eCrystal-566.cif _cod_data_source_block 06skc0059p21 _cod_depositor_comments ; Citation : Callear, Samantha K. and Hursthouse, Michael B. (2008) University of Southampton, Crystal Structure Report Archive. (doi:10.5258/ecrystals/566) More at: http://ecrystals.chem.soton.ac.uk/566/ ; _cod_original_sg_symbol_H-M P21 _cod_database_code 1519953 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y+1/2, -z' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_symmetry_multiplicity _atom_site_calc_flag _atom_site_refinement_flags _atom_site_disorder_assembly _atom_site_disorder_group C1 C 0.1903(4) 0.2033(5) 0.8753(4) 0.0236(9) Uani 1 1 d . . . C2 C 0.1488(4) 0.0514(5) 0.7602(4) 0.0253(9) Uani 1 1 d . . . O1A O 0.3433(3) 0.2147(3) 0.9406(3) 0.0275(7) Uani 1 1 d . . . O1B O 0.0738(3) 0.2984(5) 0.8971(3) 0.0365(8) Uani 1 1 d . . . O2A O 0.2606(3) -0.0619(4) 0.7512(3) 0.0341(7) Uani 1 1 d . . . O2B O 0.0017(3) 0.0605(4) 0.6823(3) 0.0312(7) Uani 1 1 d . . . C22 C 0.6242(5) 0.1313(5) 0.6670(4) 0.0276(10) Uani 1 1 d . . . H22A H 0.6478 0.0932 0.5789 0.033 Uiso 1 1 calc R . . H22B H 0.5076 0.1795 0.6478 0.033 Uiso 1 1 calc R . . C23 C 0.6423(5) -0.0382(5) 0.7610(4) 0.0293(9) Uani 1 1 d . . . H23A H 0.5612 -0.1377 0.7182 0.035 Uiso 1 1 calc R . . H23B H 0.7570 -0.0912 0.7759 0.035 Uiso 1 1 calc R . . C25 C 0.7232(4) 0.1753(6) 0.9591(4) 0.0280(9) Uani 1 1 d . . . H25A H 0.8411 0.1304 0.9826 0.034 Uiso 1 1 calc R . . H25B H 0.6945 0.2142 1.0450 0.034 Uiso 1 1 calc R . . C26 C 0.7068(5) 0.3418(5) 0.8649(4) 0.0259(9) Uani 1 1 d . . . H26A H 0.7864 0.4423 0.9083 0.031 Uiso 1 1 calc R . . H26B H 0.5916 0.3939 0.8476 0.031 Uiso 1 1 calc R . . C27 C 0.7401(5) 0.4497(5) 0.6390(4) 0.0346(10) Uani 1 1 d . . . H27A H 0.6304 0.5123 0.6222 0.052 Uiso 1 1 calc R . . H27B H 0.7597 0.4063 0.5518 0.052 Uiso 1 1 calc R . . H27C H 0.8283 0.5395 0.6822 0.052 Uiso 1 1 calc R . . N21 N 0.7430(4) 0.2835(5) 0.7317(3) 0.0250(8) Uani 1 1 d . . . H21 H 0.8507 0.2328 0.7514 0.031(11) Uiso 1 1 calc R . . N24 N 0.6108(4) 0.0184(4) 0.8946(3) 0.0253(8) Uani 1 1 d . . . H24A H 0.5008 0.0562 0.8813 0.030 Uiso 1 1 calc R . . H24B H 0.6276 -0.0845 0.9526 0.030 Uiso 1 1 calc R . . O1W O -0.1501(4) -0.1878(4) 0.4880(3) 0.0371(7) Uani 1 1 d D . . H1W H -0.090(6) -0.256(6) 0.450(5) 0.064(17) Uiso 1 1 d D . . H2W H -0.080(6) -0.123(9) 0.547(6) 0.11(3) Uiso 1 1 d D . . O2W O 0.3555(3) -0.4172(4) 0.6752(3) 0.0388(8) Uani 1 1 d D . . H21W H 0.300(5) -0.321(4) 0.685(5) 0.048(14) Uiso 1 1 d D . . H22W H 0.282(5) -0.505(5) 0.647(5) 0.064(17) Uiso 1 1 d D . . loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 C1 0.020(2) 0.028(2) 0.024(2) 0.0022(18) 0.0068(17) -0.0003(19) C2 0.021(2) 0.026(2) 0.029(2) 0.0041(18) 0.0078(17) 0.0011(19) O1A 0.0181(14) 0.0323(16) 0.0306(15) -0.0069(13) 0.0032(11) 0.0003(12) O1B 0.0185(13) 0.0444(17) 0.0450(18) -0.0165(16) 0.0051(13) 0.0018(13) O2A 0.0237(15) 0.0343(16) 0.0414(17) -0.0084(14) 0.0026(13) 0.0067(13) O2B 0.0203(14) 0.0355(16) 0.0354(16) -0.0059(14) 0.0024(12) -0.0002(13) C22 0.0209(18) 0.034(2) 0.027(2) -0.0028(18) 0.0042(18) -0.0009(16) C23 0.023(2) 0.029(2) 0.038(2) -0.0047(19) 0.0098(18) -0.0016(17) C25 0.0228(18) 0.032(2) 0.029(2) -0.0020(19) 0.0059(16) 0.0000(18) C26 0.020(2) 0.028(2) 0.030(2) -0.0040(17) 0.0053(18) 0.0039(16) C27 0.034(2) 0.032(2) 0.039(2) 0.011(2) 0.0095(19) 0.0044(19) N21 0.0208(16) 0.0234(16) 0.0307(18) 0.0047(15) 0.0060(14) 0.0050(14) N24 0.0191(16) 0.0281(18) 0.0294(19) 0.0040(15) 0.0071(14) 0.0016(14) O1W 0.0389(16) 0.0340(17) 0.0354(17) -0.0057(15) 0.0035(15) -0.0014(15) O2W 0.0276(15) 0.0354(18) 0.054(2) -0.0038(16) 0.0103(14) 0.0011(15) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_3 O1B C1 O1A 125.9(3) . . O1B C1 C2 118.1(3) . . O1A C1 C2 115.9(3) . . O2A C2 O2B 126.7(4) . . O2A C2 C1 118.0(3) . . O2B C2 C1 115.3(3) . . N21 C22 C23 110.2(3) . . N21 C22 H22A 109.6 . . C23 C22 H22A 109.6 . . N21 C22 H22B 109.6 . . C23 C22 H22B 109.6 . . H22A C22 H22B 108.1 . . N24 C23 C22 110.0(3) . . N24 C23 H23A 109.7 . . C22 C23 H23A 109.7 . . N24 C23 H23B 109.7 . . C22 C23 H23B 109.7 . . H23A C23 H23B 108.2 . . N24 C25 C26 111.0(3) . . N24 C25 H25A 109.4 . . C26 C25 H25A 109.4 . . N24 C25 H25B 109.4 . . C26 C25 H25B 109.4 . . H25A C25 H25B 108.0 . . C25 C26 N21 110.2(3) . . C25 C26 H26A 109.6 . . N21 C26 H26A 109.6 . . C25 C26 H26B 109.6 . . N21 C26 H26B 109.6 . . H26A C26 H26B 108.1 . . N21 C27 H27A 109.5 . . N21 C27 H27B 109.5 . . H27A C27 H27B 109.5 . . N21 C27 H27C 109.5 . . H27A C27 H27C 109.5 . . H27B C27 H27C 109.5 . . C22 N21 C27 112.6(3) . . C22 N21 C26 109.6(3) . . C27 N21 C26 111.5(3) . . C22 N21 H21 107.6 . . C27 N21 H21 107.6 . . C26 N21 H21 107.6 . . C25 N24 C23 111.6(3) . . C25 N24 H24A 109.3 . . C23 N24 H24A 109.3 . . C25 N24 H24B 109.3 . . C23 N24 H24B 109.3 . . H24A N24 H24B 108.0 . . H1W O1W H2W 105(3) . . H21W O2W H22W 105(3) . . loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_site_symmetry_2 C1 O1B 1.231(5) . C1 O1A 1.270(4) . C1 C2 1.553(5) . C2 O2A 1.238(4) . C2 O2B 1.270(5) . C22 N21 1.489(5) . C22 C23 1.509(6) . C22 H22A 0.9900 . C22 H22B 0.9900 . C23 N24 1.485(5) . C23 H23A 0.9900 . C23 H23B 0.9900 . C25 N24 1.485(5) . C25 C26 1.495(5) . C25 H25A 0.9900 . C25 H25B 0.9900 . C26 N21 1.500(4) . C26 H26A 0.9900 . C26 H26B 0.9900 . C27 N21 1.495(5) . C27 H27A 0.9800 . C27 H27B 0.9800 . C27 H27C 0.9800 . N21 H21 0.9300 . N24 H24A 0.9200 . N24 H24B 0.9200 . O1W H1W 0.85(2) . O1W H2W 0.85(2) . O2W H21W 0.84(2) . O2W H22W 0.86(2) . loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_site_symmetry_A N24 H24A O1A 0.92 1.91 2.733(4) 147.1 . N24 H24A O2A 0.92 2.24 2.939(4) 132.0 . O1W H2W O2B 0.85(2) 1.88(3) 2.692(4) 159(6) . O2W H21W O2A 0.84(2) 2.00(2) 2.787(4) 157(4) . N21 H21 O2B 0.93 1.98 2.786(4) 143.8 1_655 N21 H21 O1B 0.93 2.10 2.819(4) 133.3 1_655 N24 H24B O1A 0.92 1.76 2.679(4) 178.3 2_647 O1W H1W O2B 0.85(2) 2.11(2) 2.934(4) 165(5) 2_546 O2W H22W O1W 0.86(2) 1.99(3) 2.797(4) 156(5) 2_546