#------------------------------------------------------------------------------ #$Date: 2015-10-06 16:34:33 +0300 (Tue, 06 Oct 2015) $ #$Revision: 160540 $ #$URL: file:///home/coder/svn-repositories/cod/cif/1/53/10/1531043.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_1531043 loop_ _publ_author_name 'Ma, Yan-Yan' 'Zhao, Deng-Gao' 'Zhou, Ai-Yu' 'Zhang, Yu' 'Du, Zhiyun' 'Zhang, Kun' _publ_section_title ; \a-Glucosidase Inhibition and Antihyperglycemic Activity of Phenolics from the Flowers of Edgeworthia gardneri. ; _journal_issue 37 _journal_name_full 'Journal of agricultural and food chemistry' _journal_page_first 8162 _journal_page_last 8169 _journal_paper_doi 10.1021/acs.jafc.5b03081 _journal_volume 63 _journal_year 2015 _chemical_formula_moiety 'C19 H16 O7' _chemical_formula_sum 'C19 H16 O7' _chemical_formula_weight 356.32 _chemical_name_systematic ; ? ; _space_group_crystal_system monoclinic _space_group_IT_number 14 _space_group_name_Hall '-P 2ybc' _space_group_name_H-M_alt 'P 1 21/c 1' _symmetry_space_group_name_Hall '-P 2ybc' _symmetry_space_group_name_H-M 'P 1 21/c 1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_date 2015-05-25 _audit_creation_method ; Olex2 1.2 (compiled 2014.11.28 svn.r3106 for OlexSys, GUI svn.r4959) ; _cell_angle_alpha 90.00 _cell_angle_beta 114.431(12) _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 14.7352(17) _cell_length_b 8.7127(9) _cell_length_c 14.2158(12) _cell_measurement_reflns_used 952 _cell_measurement_temperature 293.18(10) _cell_measurement_theta_max 24.0590 _cell_measurement_theta_min 3.6320 _cell_volume 1661.7(3) _computing_cell_refinement ; CrysAlisPro, Agilent Technologies, Version 1.171.37.33 (release 27-03-2014 CrysAlis171 .NET) (compiled Mar 27 2014,17:12:48) ; _computing_data_collection ; CrysAlisPro, Agilent Technologies, Version 1.171.37.33 (release 27-03-2014 CrysAlis171 .NET) (compiled Mar 27 2014,17:12:48) ; _computing_data_reduction ; CrysAlisPro, Agilent Technologies, Version 1.171.37.33 (release 27-03-2014 CrysAlis171 .NET) (compiled Mar 27 2014,17:12:48) ; _computing_molecular_graphics 'Olex2 (Dolomanov et al., 2009)' _computing_publication_material 'Olex2 (Dolomanov et al., 2009)' _computing_structure_refinement 'ShelXL (Sheldrick, 2008)' _computing_structure_solution 'ShelXS (Sheldrick, 2008)' _diffrn_ambient_environment air _diffrn_ambient_temperature 293.18(10) _diffrn_detector 'CCD plate' _diffrn_detector_area_resol_mean 16.0733 _diffrn_detector_type Eos _diffrn_measured_fraction_theta_full 0.998 _diffrn_measured_fraction_theta_max 0.998 _diffrn_measurement_details ; 1 omega -18.00 12.00 1.5000 8.0000 omega____ theta____ kappa____ phi______ frames - -17.1479 -99.0000 30.0000 20 2 omega -51.00 93.00 1.5000 8.0000 omega____ theta____ kappa____ phi______ frames - 20.5854 0.0000 -30.0000 96 3 omega 19.00 67.00 1.5000 8.0000 omega____ theta____ kappa____ phi______ frames - 20.5854 57.0000 0.0000 32 ; _diffrn_measurement_device 'four-circle diffractometer' _diffrn_measurement_device_type 'SuperNova, Dual, Cu at zero, Eos' _diffrn_measurement_method '\w scans' _diffrn_orient_matrix_UB_11 0.0334405000 _diffrn_orient_matrix_UB_12 -0.0566761000 _diffrn_orient_matrix_UB_13 -0.0027848000 _diffrn_orient_matrix_UB_21 -0.0393659000 _diffrn_orient_matrix_UB_22 -0.0345747000 _diffrn_orient_matrix_UB_23 -0.0424315000 _diffrn_orient_matrix_UB_31 0.0111409000 _diffrn_orient_matrix_UB_32 0.0471879000 _diffrn_orient_matrix_UB_33 -0.0345141000 _diffrn_radiation_monochromator mirror _diffrn_radiation_probe x-ray _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0484 _diffrn_reflns_av_unetI/netI 0.0885 _diffrn_reflns_limit_h_max 17 _diffrn_reflns_limit_h_min -18 _diffrn_reflns_limit_k_max 5 _diffrn_reflns_limit_k_min -10 _diffrn_reflns_limit_l_max 17 _diffrn_reflns_limit_l_min -16 _diffrn_reflns_number 6321 _diffrn_reflns_theta_full 25.50 _diffrn_reflns_theta_max 26.02 _diffrn_reflns_theta_min 3.35 _diffrn_source 'SuperNova (Mo) X-ray Source' _exptl_absorpt_coefficient_mu 0.110 _exptl_absorpt_correction_T_max 1.00000 _exptl_absorpt_correction_T_min 0.89568 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details ; CrysAlisPro, Agilent Technologies, Version 1.171.37.33 (release 27-03-2014 CrysAlis171 .NET) (compiled Mar 27 2014,17:12:48) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm. ; _exptl_crystal_colour 'clear light colourless' _exptl_crystal_colour_lustre clear _exptl_crystal_colour_modifier light _exptl_crystal_colour_primary colourless _exptl_crystal_density_diffrn 1.424 _exptl_crystal_density_method 'not measured' _exptl_crystal_description block _exptl_crystal_F_000 744 _exptl_crystal_size_max 0.35 _exptl_crystal_size_mid 0.31 _exptl_crystal_size_min 0.24 _refine_diff_density_max 0.261 _refine_diff_density_min -0.243 _refine_diff_density_rms 0.055 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.062 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 241 _refine_ls_number_reflns 3264 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.062 _refine_ls_R_factor_all 0.1415 _refine_ls_R_factor_gt 0.0713 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0676P)^2^+0.3344P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.1532 _refine_ls_wR_factor_ref 0.2056 _reflns_number_gt 1583 _reflns_number_total 3264 _reflns_threshold_expression >2sigma(I) _cod_data_source_file jf5b03081_si_001.cif _cod_data_source_block myy_2 _cod_depositor_comments 'Adding full bibliography for 1531043.cif.' _cod_original_cell_volume 1661.6(3) _cod_database_code 1531043 _reflns_odcompleteness_completeness 99.64 _reflns_odcompleteness_iscentric 1 _reflns_odcompleteness_theta 26.32 _olex2_refinement_description ; 1. Fixed Uiso At 1.2 times of: All C(H) groups, All C(H,H) groups At 1.5 times of: All C(H,H,H) groups, All O(H) groups 2.a Secondary CH2 refined with riding coordinates: C17(H17A,H17B), C16(H16A,H16B) 2.b Aromatic/amide H refined with riding coordinates: C11(H11), C3(H3), C15(H15), C4(H4A), C14(H14), C7(H7), C6(H6) 2.c Idealised Me refined as rotating group: C19(H19A,H19B,H19C) 2.d Idealised tetrahedral OH refined as rotating group: O4(H4) ; _olex2_date_sample_data_collection 2015-05-19 _olex2_submission_special_instructions 'No special instructions were received' loop_ _space_group_symop_id _space_group_symop_operation_xyz 1 'x, y, z' 2 '-x, y+1/2, -z+1/2' 3 '-x, -y, -z' 4 'x, -y-1/2, z-1/2' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_calc_flag _atom_site_refinement_flags_posn O2 O 0.48571(18) 0.2071(3) 0.45354(17) 0.0459(7) Uani 1 d . O1 O 0.34171(17) -0.0085(3) 0.39455(16) 0.0450(7) Uani 1 d . C1 C 0.3603(3) 0.0768(4) 0.4829(2) 0.0397(9) Uani 1 d . C9 C 0.4383(3) 0.1812(4) 0.5175(2) 0.0384(9) Uani 1 d . O4 O 0.2205(2) -0.0320(4) 0.02972(17) 0.0681(10) Uani 1 d . H4 H 0.2749 -0.0730 0.0452 0.102 Uiso 1 calc GR O6 O -0.0569(2) 0.2650(4) -0.20148(19) 0.0780(11) Uani 1 d . O5 O -0.1558(2) 0.3897(4) -0.1470(2) 0.0741(10) Uani 1 d . C11 C 0.2802(3) -0.0187(4) 0.2145(2) 0.0422(9) Uani 1 d . H11 H 0.3275 -0.0942 0.2228 0.051 Uiso 1 calc R C2 C 0.3085(3) 0.0478(5) 0.5434(3) 0.0461(10) Uani 1 d . O3 O 0.6033(2) 0.3151(4) 0.4209(2) 0.0675(9) Uani 1 d . O11 O 0.2306(2) -0.0526(4) 0.5058(2) 0.0615(9) Uani 1 d . C10 C 0.2742(2) 0.0480(5) 0.3000(2) 0.0393(9) Uani 1 d . C3 C 0.3363(3) 0.1221(5) 0.6380(3) 0.0530(11) Uani 1 d . H3 H 0.3012 0.1038 0.6782 0.064 Uiso 1 calc R C5 C 0.4673(3) 0.2551(4) 0.6121(3) 0.0449(10) Uani 1 d . C15 C 0.2042(3) 0.1577(5) 0.2895(3) 0.0527(11) Uani 1 d . H15 H 0.2004 0.2028 0.3471 0.063 Uiso 1 calc R C12 C 0.2155(3) 0.0273(5) 0.1170(3) 0.0474(10) Uani 1 d . C8 C 0.5658(3) 0.3046(5) 0.4823(3) 0.0513(10) Uani 1 d . C13 C 0.1422(3) 0.1373(5) 0.1018(3) 0.0512(11) Uani 1 d . C4 C 0.4149(3) 0.2218(5) 0.6721(3) 0.0529(11) Uani 1 d . H4A H 0.4339 0.2683 0.7363 0.063 Uiso 1 calc R C14 C 0.1390(3) 0.1996(5) 0.1904(3) 0.0567(12) Uani 1 d . H14 H 0.0906 0.2730 0.1827 0.068 Uiso 1 calc R C7 C 0.5965(3) 0.3824(5) 0.5793(3) 0.0584(11) Uani 1 d . H7 H 0.6499 0.4504 0.5996 0.070 Uiso 1 calc R C6 C 0.5498(3) 0.3593(5) 0.6413(3) 0.0569(11) Uani 1 d . H6 H 0.5711 0.4113 0.7039 0.068 Uiso 1 calc R C17 C -0.0153(3) 0.2647(6) -0.0219(3) 0.0679(14) Uani 1 d . H17A H 0.0028 0.3556 0.0214 0.081 Uiso 1 calc R H17B H -0.0531 0.1988 0.0037 0.081 Uiso 1 calc R C18 C -0.0832(3) 0.3138(5) -0.1294(3) 0.0538(11) Uani 1 d . C16 C 0.0756(3) 0.1853(6) -0.0073(3) 0.0722(15) Uani 1 d . H16A H 0.1140 0.2511 -0.0324 0.087 Uiso 1 calc R H16B H 0.0580 0.0941 -0.0503 0.087 Uiso 1 calc R C19 C -0.1221(4) 0.3085(7) -0.3070(3) 0.102(2) Uani 1 d . H19A H -0.1118 0.2399 -0.3545 0.153 Uiso 1 calc GR H19B H -0.1072 0.4116 -0.3198 0.153 Uiso 1 calc GR H19C H -0.1903 0.3026 -0.3161 0.153 Uiso 1 calc GR H11A H 0.201(4) -0.064(7) 0.553(4) 0.13(2) Uiso 1 d . loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 O2 0.0373(15) 0.0592(18) 0.0396(14) 0.0023(13) 0.0145(11) 0.0013(13) O1 0.0446(15) 0.0545(17) 0.0267(12) -0.0029(12) 0.0055(11) 0.0051(13) C1 0.034(2) 0.050(2) 0.0281(17) 0.0014(18) 0.0063(15) 0.0078(19) C9 0.032(2) 0.049(2) 0.0285(17) 0.0042(17) 0.0078(15) 0.0089(18) O4 0.0548(19) 0.114(3) 0.0304(13) -0.0075(16) 0.0127(12) 0.0229(18) O6 0.060(2) 0.137(3) 0.0376(15) 0.0130(17) 0.0203(14) 0.040(2) O5 0.073(2) 0.100(3) 0.0489(17) 0.0088(17) 0.0251(16) 0.039(2) C11 0.035(2) 0.057(3) 0.0321(18) -0.0006(18) 0.0116(16) 0.0051(18) C2 0.038(2) 0.060(3) 0.0350(19) 0.0076(19) 0.0102(16) 0.001(2) O3 0.0526(19) 0.086(2) 0.0639(18) 0.0114(17) 0.0241(15) -0.0078(17) O11 0.0528(18) 0.084(2) 0.0468(16) 0.0009(16) 0.0192(14) -0.0139(16) C10 0.0296(19) 0.056(3) 0.0284(17) 0.0014(17) 0.0080(15) -0.0029(18) C3 0.053(3) 0.074(3) 0.032(2) 0.007(2) 0.0178(19) 0.006(2) C5 0.045(2) 0.046(2) 0.0327(19) 0.0026(18) 0.0048(17) 0.0093(19) C15 0.046(2) 0.082(3) 0.0295(19) 0.005(2) 0.0150(17) 0.017(2) C12 0.035(2) 0.075(3) 0.0301(18) -0.002(2) 0.0117(16) 0.002(2) C8 0.039(2) 0.059(3) 0.048(2) 0.013(2) 0.0110(19) 0.001(2) C13 0.041(2) 0.082(3) 0.0290(19) 0.006(2) 0.0118(16) 0.012(2) C4 0.054(3) 0.066(3) 0.0311(19) -0.003(2) 0.0094(18) 0.013(2) C14 0.044(2) 0.080(3) 0.045(2) 0.009(2) 0.0176(19) 0.023(2) C7 0.048(3) 0.049(3) 0.060(3) 0.000(2) 0.005(2) -0.002(2) C6 0.054(3) 0.055(3) 0.044(2) -0.004(2) 0.002(2) 0.006(2) C17 0.057(3) 0.104(4) 0.037(2) 0.015(2) 0.015(2) 0.021(3) C18 0.050(3) 0.075(3) 0.035(2) 0.007(2) 0.0150(18) 0.008(2) C16 0.050(3) 0.131(5) 0.035(2) 0.026(3) 0.0166(19) 0.030(3) C19 0.086(4) 0.185(7) 0.032(2) 0.021(3) 0.020(2) 0.054(4) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle C8 O2 C9 121.0(3) C1 O1 C10 118.7(3) O1 C1 C9 119.9(3) O1 C1 C2 120.7(3) C9 C1 C2 119.1(3) O2 C9 C1 116.5(3) O2 C9 C5 121.8(3) C1 C9 C5 121.7(3) C12 O4 H4 109.5 C18 O6 C19 116.0(3) C10 C11 H11 120.2 C12 C11 H11 120.2 C12 C11 C10 119.5(4) C1 C2 C3 119.7(4) O11 C2 C1 117.5(3) O11 C2 C3 122.7(3) C2 O11 H11A 110(3) C11 C10 O1 114.9(3) C15 C10 O1 124.0(3) C15 C10 C11 121.2(3) C2 C3 H3 119.8 C4 C3 C2 120.4(3) C4 C3 H3 119.8 C9 C5 C4 117.9(4) C9 C5 C6 117.2(3) C4 C5 C6 124.8(4) C10 C15 H15 121.0 C10 C15 C14 117.9(3) C14 C15 H15 121.0 O4 C12 C11 121.7(4) O4 C12 C13 116.5(3) C11 C12 C13 121.7(3) O2 C8 C7 118.0(3) O3 C8 O2 115.1(4) O3 C8 C7 126.9(4) C12 C13 C16 118.8(3) C14 C13 C12 116.3(3) C14 C13 C16 124.8(4) C3 C4 C5 121.1(4) C3 C4 H4A 119.4 C5 C4 H4A 119.4 C15 C14 C13 123.3(4) C15 C14 H14 118.3 C13 C14 H14 118.3 C8 C7 H7 119.3 C6 C7 C8 121.3(4) C6 C7 H7 119.3 C5 C6 H6 119.7 C7 C6 C5 120.6(4) C7 C6 H6 119.7 H17A C17 H17B 107.1 C18 C17 H17A 107.8 C18 C17 H17B 107.8 C16 C17 H17A 107.8 C16 C17 H17B 107.8 C16 C17 C18 118.1(3) O6 C18 C17 114.6(4) O5 C18 O6 123.2(4) O5 C18 C17 122.2(4) C13 C16 H16A 108.1 C13 C16 H16B 108.1 C17 C16 C13 116.7(3) C17 C16 H16A 108.1 C17 C16 H16B 108.1 H16A C16 H16B 107.3 O6 C19 H19A 109.5 O6 C19 H19B 109.5 O6 C19 H19C 109.5 H19A C19 H19B 109.5 H19A C19 H19C 109.5 H19B C19 H19C 109.5 loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance O2 C9 1.375(4) O2 C8 1.372(5) O1 C1 1.385(4) O1 C10 1.390(4) C1 C9 1.387(5) C1 C2 1.390(5) C9 C5 1.389(5) O4 H4 0.8200 O4 C12 1.374(4) O6 C18 1.307(4) O6 C19 1.458(5) O5 C18 1.193(5) C11 H11 0.9300 C11 C10 1.382(4) C11 C12 1.378(5) C2 O11 1.364(5) C2 C3 1.393(5) O3 C8 1.213(4) O11 H11A 0.94(5) C10 C15 1.368(5) C3 H3 0.9300 C3 C4 1.366(6) C5 C4 1.397(5) C5 C6 1.435(6) C15 H15 0.9300 C15 C14 1.387(5) C12 C13 1.393(5) C8 C7 1.432(6) C13 C14 1.389(5) C13 C16 1.512(5) C4 H4A 0.9300 C14 H14 0.9300 C7 H7 0.9300 C7 C6 1.338(5) C6 H6 0.9300 C17 H17A 0.9700 C17 H17B 0.9700 C17 C18 1.502(5) C17 C16 1.444(6) C16 H16A 0.9700 C16 H16B 0.9700 C19 H19A 0.9600 C19 H19B 0.9600 C19 H19C 0.9600 loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion O2 C9 C5 C4 180.0(3) O2 C9 C5 C6 -0.6(5) O2 C8 C7 C6 1.2(6) O1 C1 C9 O2 7.7(5) O1 C1 C9 C5 -172.0(3) O1 C1 C2 O11 -8.4(5) O1 C1 C2 C3 172.5(3) O1 C10 C15 C14 -177.7(4) C1 O1 C10 C11 162.7(3) C1 O1 C10 C15 -19.3(5) C1 C9 C5 C4 -0.3(5) C1 C9 C5 C6 179.1(3) C1 C2 C3 C4 -0.8(6) C9 O2 C8 O3 178.0(3) C9 O2 C8 C7 -2.1(5) C9 C1 C2 O11 178.4(3) C9 C1 C2 C3 -0.8(5) C9 C5 C4 C3 -1.4(6) C9 C5 C6 C7 -0.3(6) O4 C12 C13 C14 -178.5(4) O4 C12 C13 C16 -1.1(6) C11 C10 C15 C14 0.3(6) C11 C12 C13 C14 0.9(6) C11 C12 C13 C16 178.4(4) C2 C1 C9 O2 -178.9(3) C2 C1 C9 C5 1.3(5) C2 C3 C4 C5 1.9(6) O3 C8 C7 C6 -179.0(4) O11 C2 C3 C4 -179.9(4) C10 O1 C1 C9 -92.2(4) C10 O1 C1 C2 94.6(4) C10 C11 C12 O4 177.9(4) C10 C11 C12 C13 -1.5(6) C10 C15 C14 C13 -0.9(7) C12 C11 C10 O1 179.0(3) C12 C11 C10 C15 0.9(6) C12 C13 C14 C15 0.3(7) C12 C13 C16 C17 163.2(5) C8 O2 C9 C1 -177.9(3) C8 O2 C9 C5 1.9(5) C8 C7 C6 C5 0.0(6) C4 C5 C6 C7 179.0(4) C14 C13 C16 C17 -19.6(7) C6 C5 C4 C3 179.3(4) C18 C17 C16 C13 -179.9(4) C16 C13 C14 C15 -177.0(4) C16 C17 C18 O6 6.5(7) C16 C17 C18 O5 -174.3(5) C19 O6 C18 O5 -0.2(7) C19 O6 C18 C17 179.1(4)