#------------------------------------------------------------------------------ #$Date: 2016-02-04 09:42:54 +0200 (Thu, 04 Feb 2016) $ #$Revision: 175818 $ #$URL: file:///home/coder/svn-repositories/cod/cif/1/54/07/1540742.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_1540742 loop_ _publ_author_name 'Chen, Xun' 'Hu, Xinwei' 'Bai, Siyi' 'Deng, Yuanfu' 'Jiang, Huanfeng' 'Zeng, Wei' _publ_section_title ; Rh(III)-Catalyzed [4 + 2] Annulation of Indoles with Diazo Compounds: Access to Pyrimido[1,6-a]indole-1(2H)-ones. ; _journal_issue 2 _journal_name_full 'Organic letters' _journal_page_first 192 _journal_page_last 195 _journal_paper_doi 10.1021/acs.orglett.5b03231 _journal_volume 18 _journal_year 2016 _chemical_formula_sum 'C24 H22 N2 O5' _chemical_formula_weight 418.44 _chemical_name_systematic ; ? ; _space_group_IT_number 14 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-P 2ybc' _symmetry_space_group_name_H-M 'P 1 21/c 1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 90.00 _cell_angle_beta 107.208(8) _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 8.322(6) _cell_length_b 21.996(16) _cell_length_c 11.667(9) _cell_measurement_temperature 296(2) _cell_measurement_theta_max 27.51 _cell_measurement_theta_min 1.85 _cell_volume 2040(3) _computing_cell_refinement 'SMART (Bruker, 1998)' _computing_data_collection 'SMART (Bruker, 1998)' _computing_data_reduction 'SAIRT (Bruker, 1998)' _computing_molecular_graphics 'ORTEP-II (Johnson, 1976)' _computing_publication_material 'SHELXL-97 (Sheldrick, 1997)' _computing_structure_refinement 'SHELXL-97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS-97 (Sheldrick, 1990)' _diffrn_ambient_temperature 296(2) _diffrn_measured_fraction_theta_full 0.972 _diffrn_measured_fraction_theta_max 0.972 _diffrn_measurement_device_type 'CCD area detector' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0196 _diffrn_reflns_av_sigmaI/netI 0.0152 _diffrn_reflns_limit_h_max 10 _diffrn_reflns_limit_h_min -10 _diffrn_reflns_limit_k_max 27 _diffrn_reflns_limit_k_min -28 _diffrn_reflns_limit_l_max 14 _diffrn_reflns_limit_l_min -14 _diffrn_reflns_number 22581 _diffrn_reflns_theta_full 27.51 _diffrn_reflns_theta_max 27.51 _diffrn_reflns_theta_min 1.85 _exptl_absorpt_coefficient_mu 0.096 _exptl_absorpt_correction_T_max 0.9810 _exptl_absorpt_correction_T_min 0.9735 _exptl_crystal_colour coloeless _exptl_crystal_density_diffrn 1.362 _exptl_crystal_density_method 'not measured' _exptl_crystal_description Plane _exptl_crystal_F_000 880 _exptl_crystal_size_max 0.28 _exptl_crystal_size_mid 0.21 _exptl_crystal_size_min 0.20 _refine_diff_density_max 0.188 _refine_diff_density_min -0.202 _refine_diff_density_rms 0.041 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.050 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 280 _refine_ls_number_reflns 4569 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.050 _refine_ls_R_factor_all 0.0613 _refine_ls_R_factor_gt 0.0452 _refine_ls_shift/su_max 0.001 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0755P)^2^+0.3035P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.1230 _refine_ls_wR_factor_ref 0.1372 _reflns_number_gt 3427 _reflns_number_total 4569 _reflns_threshold_expression >2sigma(I) _cod_data_source_file ol5b03231_si_002.cif _cod_data_source_block sad _cod_depositor_comments ; The following automatic conversions were performed: '__computing_data_collection' tag replaced with '_computing_data_collection' tag. Automatic conversion script Id: cif_correct_tags 4268 2015-11-12 08:31:59Z antanas The following automatic conversions were performed: '_symmetry_cell_setting' value 'Monoclinic' changed to 'monoclinic' according to /usr/data/users/saulius/crontab/automatic-downloads/rss-feeds/ACS/lib/dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.2 from 2011-04-26. Automatic conversion script Id: cif_fix_values 4268 2015-11-12 08:31:59Z antanas Adding full bibliography for 1540742.cif. ; _cod_original_sg_symbol_H-M P2(1)/C _cod_database_code 1540742 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y+1/2, -z+1/2' '-x, -y, -z' 'x, -y-1/2, z-1/2' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_symmetry_multiplicity _atom_site_calc_flag _atom_site_refinement_flags O1 O -0.21494(15) 0.47662(5) 1.24225(10) 0.0580(3) Uani 1 1 d . O2 O -0.60902(18) 0.71883(6) 0.86396(11) 0.0726(4) Uani 1 1 d . O3 O -0.52112(16) 0.68849(5) 0.71082(10) 0.0659(3) Uani 1 1 d . O4 O -0.00852(17) 0.30162(5) 0.87752(11) 0.0653(3) Uani 1 1 d . O5 O -0.01162(14) 0.39443(5) 0.79972(9) 0.0535(3) Uani 1 1 d . N1 N -0.08621(15) 0.39566(5) 1.18265(10) 0.0449(3) Uani 1 1 d . N2 N -0.21009(14) 0.47314(5) 1.04896(10) 0.0405(3) Uani 1 1 d . C1 C 0.10711(19) 0.38684(7) 1.39412(13) 0.0478(3) Uani 1 1 d . C2 C 0.1453(2) 0.44696(8) 1.42839(15) 0.0574(4) Uani 1 1 d . H2A H 0.0710 0.4777 1.3918 0.069 Uiso 1 1 calc R C3 C 0.2920(2) 0.46150(10) 1.51604(17) 0.0710(5) Uani 1 1 d . H3A H 0.3163 0.5019 1.5382 0.085 Uiso 1 1 calc R C4 C 0.4023(2) 0.41634(11) 1.57063(17) 0.0767(6) Uani 1 1 d . H4A H 0.5013 0.4262 1.6297 0.092 Uiso 1 1 calc R C5 C 0.3670(3) 0.35686(10) 1.53836(17) 0.0736(5) Uani 1 1 d . H5A H 0.4419 0.3264 1.5754 0.088 Uiso 1 1 calc R C6 C 0.2191(2) 0.34207(8) 1.45012(15) 0.0599(4) Uani 1 1 d . H6A H 0.1953 0.3016 1.4286 0.072 Uiso 1 1 calc R C7 C -0.0582(2) 0.36989(7) 1.30429(13) 0.0503(4) Uani 1 1 d . H7A H -0.0644 0.3259 1.2978 0.060 Uiso 1 1 calc R H7B H -0.1487 0.3832 1.3349 0.060 Uiso 1 1 calc R C8 C -0.17377(18) 0.45043(7) 1.16369(13) 0.0446(3) Uani 1 1 d . C9 C -0.16436(17) 0.44557(6) 0.95400(12) 0.0406(3) Uani 1 1 d . C10 C -0.07599(17) 0.38836(6) 0.98044(12) 0.0417(3) Uani 1 1 d . C11 C -0.03882(18) 0.36467(6) 1.09307(13) 0.0439(3) Uani 1 1 d . C12 C 0.0575(2) 0.30707(7) 1.13277(15) 0.0589(4) Uani 1 1 d . H12A H 0.0849 0.2890 1.0660 0.088 Uiso 1 1 calc R H12B H -0.0098 0.2793 1.1624 0.088 Uiso 1 1 calc R H12C H 0.1592 0.3160 1.1953 0.088 Uiso 1 1 calc R C13 C -0.02863(18) 0.35584(7) 0.88355(13) 0.0458(3) Uani 1 1 d . C14 C 0.0239(2) 0.36867(8) 0.69531(15) 0.0575(4) Uani 1 1 d . H14A H 0.0950 0.3331 0.7190 0.069 Uiso 1 1 calc R H14B H 0.0839 0.3982 0.6618 0.069 Uiso 1 1 calc R C15 C -0.1344(3) 0.35118(9) 0.60307(16) 0.0699(5) Uani 1 1 d . H15A H -0.1085 0.3343 0.5347 0.105 Uiso 1 1 calc R H15B H -0.2042 0.3865 0.5789 0.105 Uiso 1 1 calc R H15C H -0.1929 0.3215 0.6359 0.105 Uiso 1 1 calc R C16 C -0.22201(18) 0.48165(6) 0.85483(13) 0.0443(3) Uani 1 1 d . H16A H -0.2089 0.4743 0.7796 0.053 Uiso 1 1 calc R C17 C -0.30582(17) 0.53261(6) 0.88686(12) 0.0419(3) Uani 1 1 d . C18 C -0.29824(16) 0.52674(6) 1.00822(12) 0.0407(3) Uani 1 1 d . C19 C -0.37186(19) 0.56866(7) 1.06663(13) 0.0475(3) Uani 1 1 d . H19A H -0.3681 0.5636 1.1465 0.057 Uiso 1 1 calc R C20 C -0.45032(19) 0.61789(7) 1.00110(13) 0.0487(4) Uani 1 1 d . H20A H -0.5009 0.6467 1.0376 0.058 Uiso 1 1 calc R C21 C -0.45626(18) 0.62593(6) 0.88075(13) 0.0450(3) Uani 1 1 d . C22 C -0.38531(18) 0.58333(6) 0.82261(13) 0.0453(3) Uani 1 1 d . H22A H -0.3906 0.5884 0.7424 0.054 Uiso 1 1 calc R C23 C -0.53649(19) 0.68214(7) 0.82064(14) 0.0500(4) Uani 1 1 d . C24 C -0.5868(3) 0.74386(9) 0.64911(18) 0.0794(6) Uani 1 1 d . H24A H -0.5697 0.7439 0.5713 0.119 Uiso 1 1 calc R H24B H -0.5296 0.7780 0.6945 0.119 Uiso 1 1 calc R H24C H -0.7049 0.7467 0.6404 0.119 Uiso 1 1 calc R loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 O1 0.0702(7) 0.0665(7) 0.0416(6) 0.0015(5) 0.0233(5) 0.0091(5) O2 0.1019(10) 0.0581(7) 0.0601(7) 0.0012(6) 0.0274(7) 0.0254(7) O3 0.0889(9) 0.0586(7) 0.0562(7) 0.0143(5) 0.0307(6) 0.0185(6) O4 0.0967(9) 0.0430(6) 0.0610(7) -0.0044(5) 0.0305(6) 0.0043(6) O5 0.0709(7) 0.0476(6) 0.0500(6) -0.0036(5) 0.0302(5) -0.0012(5) N1 0.0512(7) 0.0453(6) 0.0385(6) 0.0028(5) 0.0137(5) -0.0047(5) N2 0.0442(6) 0.0414(6) 0.0372(6) -0.0015(5) 0.0142(5) -0.0037(5) C1 0.0526(8) 0.0544(9) 0.0387(7) 0.0047(6) 0.0173(6) -0.0021(7) C2 0.0639(10) 0.0556(9) 0.0512(9) 0.0020(7) 0.0146(8) -0.0033(8) C3 0.0719(12) 0.0742(12) 0.0639(11) -0.0120(9) 0.0156(9) -0.0164(10) C4 0.0578(11) 0.1073(17) 0.0587(11) -0.0106(11) 0.0077(9) -0.0044(11) C5 0.0650(11) 0.0899(15) 0.0601(11) 0.0035(10) 0.0095(9) 0.0171(10) C6 0.0678(10) 0.0607(10) 0.0497(9) 0.0032(7) 0.0152(8) 0.0067(8) C7 0.0567(9) 0.0524(8) 0.0433(8) 0.0081(6) 0.0169(7) -0.0064(7) C8 0.0460(7) 0.0489(8) 0.0398(7) -0.0004(6) 0.0140(6) -0.0052(6) C9 0.0426(7) 0.0418(7) 0.0392(7) -0.0049(5) 0.0152(6) -0.0079(6) C10 0.0440(7) 0.0397(7) 0.0413(7) -0.0028(6) 0.0125(6) -0.0055(6) C11 0.0456(7) 0.0400(7) 0.0462(8) -0.0023(6) 0.0136(6) -0.0079(6) C12 0.0745(11) 0.0469(8) 0.0543(9) 0.0041(7) 0.0177(8) 0.0052(8) C13 0.0475(8) 0.0441(8) 0.0460(8) -0.0037(6) 0.0142(6) -0.0041(6) C14 0.0707(10) 0.0576(9) 0.0544(9) -0.0056(7) 0.0343(8) -0.0004(8) C15 0.0773(12) 0.0819(13) 0.0513(10) -0.0025(9) 0.0203(9) -0.0020(10) C16 0.0509(8) 0.0454(8) 0.0382(7) -0.0020(6) 0.0156(6) -0.0008(6) C17 0.0429(7) 0.0435(7) 0.0404(7) -0.0030(6) 0.0140(6) -0.0057(6) C18 0.0414(7) 0.0414(7) 0.0402(7) -0.0016(6) 0.0134(6) -0.0063(5) C19 0.0538(8) 0.0500(8) 0.0412(7) -0.0035(6) 0.0177(6) -0.0023(6) C20 0.0537(8) 0.0458(8) 0.0492(8) -0.0059(6) 0.0192(7) 0.0001(6) C21 0.0456(7) 0.0427(7) 0.0462(8) -0.0019(6) 0.0129(6) -0.0039(6) C22 0.0501(8) 0.0452(8) 0.0412(7) 0.0009(6) 0.0146(6) -0.0025(6) C23 0.0548(9) 0.0460(8) 0.0482(8) -0.0024(6) 0.0136(7) -0.0009(7) C24 0.1159(17) 0.0596(11) 0.0636(12) 0.0192(9) 0.0278(11) 0.0173(11) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle C23 O3 C24 116.10(14) C13 O5 C14 117.33(13) C8 N1 C11 123.59(12) C8 N1 C7 114.23(12) C11 N1 C7 122.01(13) C8 N2 C18 125.46(12) C8 N2 C9 125.12(13) C18 N2 C9 109.42(11) C6 C1 C2 118.53(16) C6 C1 C7 120.11(15) C2 C1 C7 121.22(14) C3 C2 C1 120.71(17) C3 C2 H2A 119.6 C1 C2 H2A 119.6 C4 C3 C2 119.99(19) C4 C3 H3A 120.0 C2 C3 H3A 120.0 C5 C4 C3 120.23(19) C5 C4 H4A 119.9 C3 C4 H4A 119.9 C4 C5 C6 119.89(19) C4 C5 H5A 120.1 C6 C5 H5A 120.1 C1 C6 C5 120.65(18) C1 C6 H6A 119.7 C5 C6 H6A 119.7 N1 C7 C1 115.08(12) N1 C7 H7A 108.5 C1 C7 H7A 108.5 N1 C7 H7B 108.5 C1 C7 H7B 108.5 H7A C7 H7B 107.5 O1 C8 N2 122.14(14) O1 C8 N1 122.83(14) N2 C8 N1 115.03(12) C16 C9 N2 107.84(13) C16 C9 C10 135.68(13) N2 C9 C10 116.47(12) C11 C10 C9 119.71(13) C11 C10 C13 120.95(14) C9 C10 C13 119.34(13) C10 C11 N1 120.06(14) C10 C11 C12 124.77(14) N1 C11 C12 115.13(13) C11 C12 H12A 109.5 C11 C12 H12B 109.5 H12A C12 H12B 109.5 C11 C12 H12C 109.5 H12A C12 H12C 109.5 H12B C12 H12C 109.5 O4 C13 O5 122.58(14) O4 C13 C10 126.26(14) O5 C13 C10 111.15(13) O5 C14 C15 110.64(15) O5 C14 H14A 109.5 C15 C14 H14A 109.5 O5 C14 H14B 109.5 C15 C14 H14B 109.5 H14A C14 H14B 108.1 C14 C15 H15A 109.5 C14 C15 H15B 109.5 H15A C15 H15B 109.5 C14 C15 H15C 109.5 H15A C15 H15C 109.5 H15B C15 H15C 109.5 C9 C16 C17 108.09(13) C9 C16 H16A 126.0 C17 C16 H16A 126.0 C22 C17 C18 119.18(13) C22 C17 C16 132.64(14) C18 C17 C16 108.18(13) C19 C18 N2 131.00(13) C19 C18 C17 122.52(14) N2 C18 C17 106.47(12) C20 C19 C18 117.08(14) C20 C19 H19A 121.5 C18 C19 H19A 121.5 C19 C20 C21 121.80(14) C19 C20 H20A 119.1 C21 C20 H20A 119.1 C22 C21 C20 120.71(14) C22 C21 C23 122.04(14) C20 C21 C23 117.22(13) C21 C22 C17 118.67(14) C21 C22 H22A 120.7 C17 C22 H22A 120.7 O2 C23 O3 122.40(15) O2 C23 C21 124.95(15) O3 C23 C21 112.65(13) O3 C24 H24A 109.5 O3 C24 H24B 109.5 H24A C24 H24B 109.5 O3 C24 H24C 109.5 H24A C24 H24C 109.5 H24B C24 H24C 109.5 loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance O1 C8 1.2146(18) O2 C23 1.2048(19) O3 C23 1.332(2) O3 C24 1.438(2) O4 C13 1.209(2) O5 C13 1.3339(19) O5 C14 1.4509(19) N1 C8 1.391(2) N1 C11 1.3987(19) N1 C7 1.481(2) N2 C8 1.376(2) N2 C18 1.3955(19) N2 C9 1.4106(18) C1 C6 1.380(2) C1 C2 1.391(2) C1 C7 1.509(2) C2 C3 1.378(3) C2 H2A 0.9300 C3 C4 1.375(3) C3 H3A 0.9300 C4 C5 1.369(3) C4 H4A 0.9300 C5 C6 1.390(3) C5 H5A 0.9300 C6 H6A 0.9300 C7 H7A 0.9700 C7 H7B 0.9700 C9 C16 1.368(2) C9 C10 1.444(2) C10 C11 1.361(2) C10 C13 1.486(2) C11 C12 1.498(2) C12 H12A 0.9600 C12 H12B 0.9600 C12 H12C 0.9600 C14 C15 1.484(3) C14 H14A 0.9700 C14 H14B 0.9700 C15 H15A 0.9600 C15 H15B 0.9600 C15 H15C 0.9600 C16 C17 1.427(2) C16 H16A 0.9300 C17 C22 1.397(2) C17 C18 1.404(2) C18 C19 1.392(2) C19 C20 1.374(2) C19 H19A 0.9300 C20 C21 1.402(2) C20 H20A 0.9300 C21 C22 1.387(2) C21 C23 1.480(2) C22 H22A 0.9300 C24 H24A 0.9600 C24 H24B 0.9600 C24 H24C 0.9600