#------------------------------------------------------------------------------ #$Date: 2016-08-17 03:59:29 +0300 (Wed, 17 Aug 2016) $ #$Revision: 185835 $ #$URL: file:///home/coder/svn-repositories/cod/cif/1/54/38/1543898.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_1543898 loop_ _publ_author_name 'Xie, Ming-Sheng' 'Zhou, Peng' 'Niu, Hong-Ying' 'Qu, Gui-Rong' 'Guo, Hai-Ming' _publ_section_title ; Enantioselective Intermolecular Cyclopropanations for the Synthesis of Chiral Pyrimidine Carbocyclic Nucleosides ; _journal_name_full 'Organic Letters' _journal_paper_doi 10.1021/acs.orglett.6b02104 _journal_year 2016 _chemical_absolute_configuration rm _chemical_formula_moiety 'C18 H17 Cl N2 O5' _chemical_formula_sum 'C18 H17 Cl N2 O5' _chemical_formula_weight 376.79 _chemical_name_systematic ; ? ; _space_group_IT_number 19 _symmetry_cell_setting orthorhombic _symmetry_space_group_name_Hall 'P 2ac 2ab' _symmetry_space_group_name_H-M 'P 21 21 21' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 90.00 _cell_angle_beta 90.00 _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 5.0868(10) _cell_length_b 11.793(2) _cell_length_c 30.515(6) _cell_measurement_reflns_used 3054 _cell_measurement_temperature 296(2) _cell_measurement_theta_max 20.50 _cell_measurement_theta_min 2.18 _cell_volume 1830.6(6) _computing_cell_refinement 'Bruker SAINT' _computing_data_collection 'Bruker APEX2' _computing_data_reduction 'Bruker SAINT A ' _computing_molecular_graphics 'Bruker SHELXTL' _computing_publication_material 'Bruker SHELXTL' _computing_structure_refinement 'SHELXL-97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS-97 (Sheldrick, 1990)' _diffrn_ambient_temperature 296(2) _diffrn_measured_fraction_theta_full 0.997 _diffrn_measured_fraction_theta_max 0.997 _diffrn_measurement_device_type 'Bruker APEX-II CCD' _diffrn_measurement_method '\f and \w scans' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0677 _diffrn_reflns_av_sigmaI/netI 0.0646 _diffrn_reflns_limit_h_max 6 _diffrn_reflns_limit_h_min -6 _diffrn_reflns_limit_k_max 14 _diffrn_reflns_limit_k_min -12 _diffrn_reflns_limit_l_max 35 _diffrn_reflns_limit_l_min -36 _diffrn_reflns_number 11447 _diffrn_reflns_theta_full 24.99 _diffrn_reflns_theta_max 24.99 _diffrn_reflns_theta_min 1.33 _diffrn_standards_number 0 _exptl_absorpt_coefficient_mu 0.240 _exptl_absorpt_correction_T_max 0.9536 _exptl_absorpt_correction_T_min 0.9102 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details SADABS _exptl_crystal_colour COLOURLESS _exptl_crystal_density_diffrn 1.367 _exptl_crystal_density_method 'not measured' _exptl_crystal_description BLOCK _exptl_crystal_F_000 784 _exptl_crystal_size_max 0.40 _exptl_crystal_size_mid 0.35 _exptl_crystal_size_min 0.20 _refine_diff_density_max 0.356 _refine_diff_density_min -0.344 _refine_diff_density_rms 0.115 _refine_ls_abs_structure_details 'Flack H D (1983), Acta Cryst. A39, 876-881' _refine_ls_abs_structure_Flack 0.0(2) _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.110 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 235 _refine_ls_number_reflns 3202 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.110 _refine_ls_R_factor_all 0.1122 _refine_ls_R_factor_gt 0.0670 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0954P)^2^+1.0657P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.1730 _refine_ls_wR_factor_ref 0.2146 _reflns_number_gt 2078 _reflns_number_total 3202 _reflns_threshold_expression >2sigma(I) _cod_data_source_file ol6b02104_si_002.cif _cod_data_source_block t _cod_depositor_comments ; The following automatic conversions were performed: '_chemical_absolute_configuration' value 'RM' changed to 'rm' according to /usr/data/users/saulius/crontab/automatic-downloads/rss-feeds/ACS/lib/dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.2 from 2011-04-26. '_exptl_absorpt_correction_type' value 'MULTI-SCAN' changed to 'multi-scan' according to /usr/data/users/saulius/crontab/automatic-downloads/rss-feeds/ACS/lib/dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.2 from 2011-04-26. '_refine_ls_hydrogen_treatment' value 'CONSTR' changed to 'constr' according to /usr/data/users/saulius/crontab/automatic-downloads/rss-feeds/ACS/lib/dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.2 from 2011-04-26. Automatic conversion script Id: cif_fix_values 4268 2015-11-12 08:31:59Z antanas ; _cod_original_cell_volume 1830.5(6) _cod_database_code 1543898 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x+1/2, -y, z+1/2' '-x, y+1/2, -z+1/2' 'x+1/2, -y+1/2, -z' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_symmetry_multiplicity _atom_site_calc_flag _atom_site_refinement_flags Cl1 Cl 0.5891(5) 0.7035(2) 0.03476(6) 0.1094(8) Uani 1 1 d . C1 C 0.4095(15) 0.6489(5) 0.0780(2) 0.0752(17) Uani 1 1 d . C2 C 0.2010(15) 0.7077(5) 0.0949(2) 0.0796(19) Uani 1 1 d . H2 H 0.1558 0.7776 0.0830 0.096 Uiso 1 1 calc R C3 C 0.0603(14) 0.6659(5) 0.1287(2) 0.0741(17) Uani 1 1 d . H3 H -0.0798 0.7074 0.1399 0.089 Uiso 1 1 calc R C4 C 0.1232(11) 0.5602(4) 0.14709(18) 0.0559(13) Uani 1 1 d . C5 C 0.3391(11) 0.5027(5) 0.12979(18) 0.0601(14) Uani 1 1 d . H5 H 0.3890 0.4338 0.1421 0.072 Uiso 1 1 calc R C6 C 0.4794(13) 0.5449(5) 0.0952(2) 0.0714(16) Uani 1 1 d . H6 H 0.6196 0.5043 0.0835 0.086 Uiso 1 1 calc R C7 C -0.0262(11) 0.5160(5) 0.1835(2) 0.0622(15) Uani 1 1 d . C8 C -0.0043(9) 0.3110(4) 0.17752(18) 0.0543(13) Uani 1 1 d . C9 C 0.3131(11) 0.2152(5) 0.22237(16) 0.0581(13) Uani 1 1 d . H9 H 0.3997 0.1476 0.2286 0.070 Uiso 1 1 calc R C10 C 0.3689(11) 0.3063(5) 0.24723(17) 0.0595(13) Uani 1 1 d . C11 C 0.2397(10) 0.4112(5) 0.23741(17) 0.0580(14) Uani 1 1 d . C12 C 0.5586(14) 0.3033(6) 0.2841(2) 0.085(2) Uani 1 1 d . H12A H 0.5684 0.3769 0.2974 0.128 Uiso 1 1 calc R H12B H 0.7290 0.2822 0.2733 0.128 Uiso 1 1 calc R H12C H 0.5013 0.2489 0.3055 0.128 Uiso 1 1 calc R C13 C 0.0885(11) 0.1133(4) 0.16306(17) 0.0566(13) Uani 1 1 d . H13 H -0.0466 0.0617 0.1742 0.068 Uiso 1 1 calc R C14 C 0.3204(13) 0.0607(7) 0.1424(2) 0.091(2) Uani 1 1 d . H14A H 0.3276 -0.0214 0.1413 0.109 Uiso 1 1 calc R H14B H 0.4890 0.0978 0.1463 0.109 Uiso 1 1 calc R C15 C 0.1187(12) 0.1193(5) 0.11484(18) 0.0660(15) Uani 1 1 d . H15 H 0.1675 0.1929 0.1024 0.079 Uiso 1 1 calc R C16 C -0.0618(14) 0.0481(6) 0.0889(2) 0.0752(18) Uani 1 1 d . C17 C -0.335(2) 0.0379(8) 0.0253(3) 0.125(3) Uani 1 1 d . H17A H -0.2529 -0.0298 0.0135 0.150 Uiso 1 1 calc R H17B H -0.4853 0.0150 0.0428 0.150 Uiso 1 1 calc R C18 C -0.416(3) 0.1066(11) -0.0084(3) 0.182(5) Uani 1 1 d . H18A H -0.5326 0.0651 -0.0272 0.273 Uiso 1 1 calc R H18B H -0.2661 0.1315 -0.0248 0.273 Uiso 1 1 calc R H18C H -0.5066 0.1713 0.0034 0.273 Uiso 1 1 calc R N1 N 0.0626(8) 0.4074(4) 0.20157(14) 0.0543(10) Uani 1 1 d . N2 N 0.1336(8) 0.2158(3) 0.18794(13) 0.0501(10) Uani 1 1 d . O1 O -0.2200(9) 0.5600(4) 0.19906(16) 0.0907(14) Uani 1 1 d . O2 O 0.2674(8) 0.5018(4) 0.25583(13) 0.0723(11) Uani 1 1 d . O3 O -0.1753(7) 0.3159(3) 0.14907(12) 0.0679(11) Uani 1 1 d . O4 O -0.1340(13) -0.0463(4) 0.09874(17) 0.0965(15) Uani 1 1 d . O5 O -0.1457(12) 0.1001(4) 0.05288(14) 0.0983(16) Uani 1 1 d . loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 Cl1 0.1091(14) 0.1201(16) 0.0989(13) 0.0399(12) -0.0177(12) -0.0341(14) C1 0.078(4) 0.060(4) 0.087(4) 0.018(3) -0.022(4) -0.016(3) C2 0.097(5) 0.049(3) 0.092(5) 0.012(3) -0.031(4) -0.005(4) C3 0.080(4) 0.045(3) 0.098(5) -0.007(3) -0.019(4) 0.015(3) C4 0.050(3) 0.044(3) 0.074(4) -0.006(2) -0.010(3) 0.011(2) C5 0.056(3) 0.049(3) 0.076(4) 0.006(3) -0.006(3) 0.011(3) C6 0.067(4) 0.066(4) 0.081(4) 0.007(3) -0.005(3) -0.002(3) C7 0.060(3) 0.048(3) 0.078(4) -0.017(3) -0.006(3) 0.020(3) C8 0.044(3) 0.050(3) 0.069(3) -0.003(3) 0.000(3) 0.002(2) C9 0.058(3) 0.058(3) 0.058(3) 0.015(3) -0.007(3) -0.002(3) C10 0.055(3) 0.062(3) 0.061(3) 0.014(3) -0.010(3) -0.002(3) C11 0.056(3) 0.060(3) 0.057(3) 0.001(3) 0.004(3) -0.009(3) C12 0.085(4) 0.090(5) 0.080(4) 0.019(4) -0.029(4) -0.023(4) C13 0.058(3) 0.045(3) 0.067(3) -0.003(2) -0.004(3) 0.012(3) C14 0.069(4) 0.105(5) 0.099(5) -0.030(4) -0.013(3) 0.045(4) C15 0.063(3) 0.062(4) 0.073(4) -0.004(3) 0.000(3) 0.005(3) C16 0.076(4) 0.077(4) 0.072(4) -0.020(4) -0.002(3) 0.028(4) C17 0.144(8) 0.124(7) 0.107(6) -0.031(5) -0.048(7) 0.014(7) C18 0.187(12) 0.204(13) 0.155(9) -0.033(9) -0.082(10) -0.024(11) N1 0.050(2) 0.047(2) 0.065(3) -0.002(2) -0.007(2) 0.005(2) N2 0.047(2) 0.044(2) 0.059(2) -0.001(2) -0.003(2) -0.001(2) O1 0.081(3) 0.087(3) 0.104(3) -0.015(2) 0.010(3) 0.041(3) O2 0.074(3) 0.065(2) 0.078(3) -0.009(2) -0.005(2) -0.018(2) O3 0.055(2) 0.062(2) 0.087(3) -0.016(2) -0.019(2) 0.0161(19) O4 0.118(4) 0.055(3) 0.116(4) -0.013(3) -0.013(3) 0.005(3) O5 0.136(4) 0.085(3) 0.074(3) -0.018(2) -0.035(3) 0.017(3) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Cl Cl 0.1484 0.1585 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle C2 C1 C6 120.3(7) C2 C1 Cl1 120.6(5) C6 C1 Cl1 119.1(6) C3 C2 C1 121.0(6) C3 C2 H2 119.5 C1 C2 H2 119.5 C2 C3 C4 120.6(6) C2 C3 H3 119.7 C4 C3 H3 119.7 C5 C4 C3 117.4(6) C5 C4 C7 122.1(5) C3 C4 C7 120.5(5) C6 C5 C4 121.7(5) C6 C5 H5 119.1 C4 C5 H5 119.1 C5 C6 C1 118.9(6) C5 C6 H6 120.5 C1 C6 H6 120.5 O1 C7 C4 125.2(6) O1 C7 N1 118.5(6) C4 C7 N1 116.3(4) O3 C8 N2 124.6(5) O3 C8 N1 120.3(5) N2 C8 N1 115.1(4) C10 C9 N2 124.1(5) C10 C9 H9 118.0 N2 C9 H9 118.0 C9 C10 C11 118.3(5) C9 C10 C12 123.1(5) C11 C10 C12 118.5(5) O2 C11 N1 117.3(5) O2 C11 C10 127.5(5) N1 C11 C10 115.2(5) C10 C12 H12A 109.5 C10 C12 H12B 109.5 H12A C12 H12B 109.5 C10 C12 H12C 109.5 H12A C12 H12C 109.5 H12B C12 H12C 109.5 N2 C13 C14 116.7(5) N2 C13 C15 117.8(5) C14 C13 C15 60.8(4) N2 C13 H13 116.6 C14 C13 H13 116.6 C15 C13 H13 116.6 C13 C14 C15 59.8(4) C13 C14 H14A 117.8 C15 C14 H14A 117.8 C13 C14 H14B 117.8 C15 C14 H14B 117.8 H14A C14 H14B 114.9 C16 C15 C13 116.2(5) C16 C15 C14 117.8(6) C13 C15 C14 59.3(4) C16 C15 H15 117.0 C13 C15 H15 117.0 C14 C15 H15 117.0 O4 C16 O5 122.1(7) O4 C16 C15 125.5(6) O5 C16 C15 112.4(6) C18 C17 O5 109.3(8) C18 C17 H17A 109.8 O5 C17 H17A 109.8 C18 C17 H17B 109.8 O5 C17 H17B 109.8 H17A C17 H17B 108.3 C17 C18 H18A 109.5 C17 C18 H18B 109.5 H18A C18 H18B 109.5 C17 C18 H18C 109.5 H18A C18 H18C 109.5 H18B C18 H18C 109.5 C8 N1 C11 125.9(4) C8 N1 C7 116.0(4) C11 N1 C7 117.3(4) C8 N2 C9 121.2(4) C8 N2 C13 119.0(4) C9 N2 C13 119.8(4) C16 O5 C17 116.9(6) loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance Cl1 C1 1.729(7) C1 C2 1.369(10) C1 C6 1.381(8) C2 C3 1.348(9) C2 H2 0.9300 C3 C4 1.404(7) C3 H3 0.9300 C4 C5 1.394(7) C4 C7 1.443(8) C5 C6 1.367(8) C5 H5 0.9300 C6 H6 0.9300 C7 O1 1.211(6) C7 N1 1.466(7) C8 O3 1.230(6) C8 N2 1.362(6) C8 N1 1.395(7) C9 C10 1.345(7) C9 N2 1.392(6) C9 H9 0.9300 C10 C11 1.433(7) C10 C12 1.483(8) C11 O2 1.215(6) C11 N1 1.418(6) C12 H12A 0.9600 C12 H12B 0.9600 C12 H12C 0.9600 C13 N2 1.445(6) C13 C14 1.474(8) C13 C15 1.481(7) C13 H13 0.9800 C14 C15 1.496(8) C14 H14A 0.9700 C14 H14B 0.9700 C15 C16 1.474(9) C15 H15 0.9800 C16 O4 1.211(8) C16 O5 1.330(7) C17 C18 1.372(13) C17 O5 1.475(10) C17 H17A 0.9700 C17 H17B 0.9700 C18 H18A 0.9600 C18 H18B 0.9600 C18 H18C 0.9600 loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion C6 C1 C2 C3 0.1(10) Cl1 C1 C2 C3 -179.9(5) C1 C2 C3 C4 -0.5(10) C2 C3 C4 C5 1.6(8) C2 C3 C4 C7 179.4(6) C3 C4 C5 C6 -2.3(8) C7 C4 C5 C6 179.9(5) C4 C5 C6 C1 2.0(9) C2 C1 C6 C5 -0.8(9) Cl1 C1 C6 C5 179.1(5) C5 C4 C7 O1 -177.5(5) C3 C4 C7 O1 4.7(9) C5 C4 C7 N1 0.4(7) C3 C4 C7 N1 -177.4(5) N2 C9 C10 C11 -1.1(8) N2 C9 C10 C12 179.3(5) C9 C10 C11 O2 -179.1(6) C12 C10 C11 O2 0.5(9) C9 C10 C11 N1 0.0(7) C12 C10 C11 N1 179.6(5) N2 C13 C14 C15 -108.5(5) N2 C13 C15 C16 -145.1(5) C14 C13 C15 C16 108.2(6) N2 C13 C15 C14 106.7(6) C13 C14 C15 C16 -105.5(6) C13 C15 C16 O4 -37.9(9) C14 C15 C16 O4 29.6(9) C13 C15 C16 O5 140.7(6) C14 C15 C16 O5 -151.8(6) O3 C8 N1 C11 174.6(5) N2 C8 N1 C11 -5.9(7) O3 C8 N1 C7 -15.8(7) N2 C8 N1 C7 163.7(5) O2 C11 N1 C8 -177.1(5) C10 C11 N1 C8 3.7(7) O2 C11 N1 C7 13.4(7) C10 C11 N1 C7 -165.8(5) O1 C7 N1 C8 100.8(6) C4 C7 N1 C8 -77.3(6) O1 C7 N1 C11 -88.7(6) C4 C7 N1 C11 93.2(6) O3 C8 N2 C9 -176.1(5) N1 C8 N2 C9 4.5(6) O3 C8 N2 C13 2.9(8) N1 C8 N2 C13 -176.5(4) C10 C9 N2 C8 -1.3(8) C10 C9 N2 C13 179.7(5) C14 C13 N2 C8 124.4(5) C15 C13 N2 C8 55.0(7) C14 C13 N2 C9 -56.5(7) C15 C13 N2 C9 -126.0(5) O4 C16 O5 C17 0.7(10) C15 C16 O5 C17 -177.9(6) C18 C17 O5 C16 175.3(9)