#------------------------------------------------------------------------------ #$Date: 2019-10-30 02:08:55 +0200 (Wed, 30 Oct 2019) $ #$Revision: 220504 $ #$URL: file:///home/coder/svn-repositories/cod/cif/1/55/25/1552502.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_1552502 loop_ _publ_author_name 'Zhao, Dong-Lin' 'Cao, Fei' 'Wang, Chao-Yi' 'Yang, Lu-Jia' 'Shi, Ting' 'Wang, Kai-Ling' 'Shao, Chang-Lun' 'Wang, Chang-Yun' _publ_section_title ; Alternatone A, an Unusual Perylenequinone-Related Compound from a Soft-Coral-Derived Strain of the Fungus Alternaria alternata ; _journal_name_full 'Journal of Natural Products' _journal_paper_doi 10.1021/acs.jnatprod.9b00905 _journal_year 2019 _chemical_absolute_configuration unk _chemical_formula_sum 'C20 H18 O6' _chemical_formula_weight 354.34 _space_group_IT_number 19 _space_group_name_Hall 'P 2ac 2ab' _space_group_name_H-M_alt 'P 21 21 21' _symmetry_cell_setting orthorhombic _symmetry_space_group_name_Hall 'P 2ac 2ab' _symmetry_space_group_name_H-M 'P 21 21 21' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 90.00 _cell_angle_beta 90.00 _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 7.7975(2) _cell_length_b 12.7667(3) _cell_length_c 16.0617(4) _cell_measurement_reflns_used 9898 _cell_measurement_temperature 100(2) _cell_measurement_theta_max 67.4404 _cell_measurement_theta_min 4.4240 _cell_volume 1598.92(7) _computing_structure_refinement 'SHELXL-97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS-97 (Sheldrick, 1990)' _diffrn_ambient_temperature 100(2) _diffrn_measured_fraction_theta_full 0.970 _diffrn_measured_fraction_theta_max 0.970 _diffrn_measurement_device_type bruker-CCD _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type CuK\a _diffrn_radiation_wavelength 1.54178 _diffrn_reflns_av_R_equivalents 0.0309 _diffrn_reflns_av_sigmaI/netI 0.0217 _diffrn_reflns_limit_h_max 8 _diffrn_reflns_limit_h_min -7 _diffrn_reflns_limit_k_max 14 _diffrn_reflns_limit_k_min -15 _diffrn_reflns_limit_l_max 18 _diffrn_reflns_limit_l_min -19 _diffrn_reflns_number 12500 _diffrn_reflns_theta_full 66.05 _diffrn_reflns_theta_max 66.05 _diffrn_reflns_theta_min 4.42 _exptl_absorpt_coefficient_mu 0.909 _exptl_absorpt_correction_T_max 0.8462 _exptl_absorpt_correction_T_min 0.8320 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details sadabs _exptl_crystal_colour yellow _exptl_crystal_density_diffrn 1.472 _exptl_crystal_density_method 'not measured' _exptl_crystal_description block _exptl_crystal_F_000 744 _exptl_crystal_size_max 0.21 _exptl_crystal_size_mid 0.20 _exptl_crystal_size_min 0.19 _refine_diff_density_max 0.164 _refine_diff_density_min -0.230 _refine_diff_density_rms 0.036 _refine_ls_abs_structure_details 'Flack H D (1983), Acta Cryst. A39, 876-881' _refine_ls_abs_structure_Flack 0.03(15) _refine_ls_extinction_coef 0.0041(6) _refine_ls_extinction_expression Fc^*^=kFc[1+0.001xFc^2^\l^3^/sin(2\q)]^-1/4^ _refine_ls_extinction_method SHELXL _refine_ls_goodness_of_fit_ref 1.070 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 242 _refine_ls_number_reflns 2692 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.070 _refine_ls_R_factor_all 0.0287 _refine_ls_R_factor_gt 0.0285 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0529P)^2^+0.2634P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.0785 _refine_ls_wR_factor_ref 0.0789 _reflns_number_gt 2661 _reflns_number_total 2692 _reflns_threshold_expression >2sigma(I) _cod_data_source_file np9b00905_si_002.cif _cod_data_source_block 1 _cod_original_sg_symbol_H-M P212121 _cod_database_code 1552502 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' 'x+1/2, -y+1/2, -z' '-x, y+1/2, -z+1/2' '-x+1/2, -y, z+1/2' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_symmetry_multiplicity _atom_site_calc_flag _atom_site_refinement_flags O1W O 0.11439(14) 0.72022(9) 0.92547(7) 0.0274(3) Uani 1 1 d G H1WB H 0.0457 0.7253 0.8846 0.041 Uiso 1 1 d G H1WA H 0.0575 0.7105 0.9700 0.041 Uiso 1 1 d G O1 O 0.10971(15) 0.16254(10) 0.87037(7) 0.0317(3) Uani 1 1 d . H1 H 0.0622 0.1788 0.8253 0.048 Uiso 1 1 calc R O2 O 0.08770(13) 0.24213(9) 0.72143(7) 0.0245(3) Uani 1 1 d . O3 O 0.58258(13) 0.32022(9) 0.56910(6) 0.0211(2) Uani 1 1 d . H3 H 0.6815 0.2956 0.5622 0.032 Uiso 1 1 calc R O4 O 0.10841(14) 0.45896(10) 0.86835(7) 0.0301(3) Uani 1 1 d . O5 O 0.29266(15) 0.51187(9) 0.99765(7) 0.0275(3) Uani 1 1 d . H5 H 0.2027 0.4971 0.9714 0.041 Uiso 1 1 calc R C1 C 0.3783(2) 0.17006(12) 0.93701(10) 0.0263(4) Uani 1 1 d . H1A H 0.3301 0.1381 0.9850 0.032 Uiso 1 1 calc R C2 C 0.5489(2) 0.19688(12) 0.93579(9) 0.0247(3) Uani 1 1 d . H2A H 0.6174 0.1836 0.9836 0.030 Uiso 1 1 calc R C3 C 0.6241(2) 0.24326(12) 0.86592(9) 0.0212(3) Uani 1 1 d . H3A H 0.7429 0.2598 0.8660 0.025 Uiso 1 1 calc R C4 C 0.52489(19) 0.26501(11) 0.79654(9) 0.0178(3) Uani 1 1 d . C5 C 0.3489(2) 0.23853(12) 0.79689(9) 0.0191(3) Uani 1 1 d . C6 C 0.2763(2) 0.18986(12) 0.86761(10) 0.0244(3) Uani 1 1 d . C7 C 0.24302(19) 0.26364(12) 0.72464(9) 0.0196(3) Uani 1 1 d . C8 C 0.32943(19) 0.32208(12) 0.65450(9) 0.0191(3) Uani 1 1 d . H8A H 0.2619 0.3168 0.6018 0.023 Uiso 1 1 calc R C9 C 0.51026(18) 0.27838(12) 0.64346(9) 0.0189(3) Uani 1 1 d . H9A H 0.5103 0.2000 0.6429 0.023 Uiso 1 1 calc R C10 C 0.59738(18) 0.32146(11) 0.72170(9) 0.0185(3) Uani 1 1 d . H10A H 0.7249 0.3139 0.7186 0.022 Uiso 1 1 calc R C11 C 0.54190(18) 0.43995(11) 0.72121(9) 0.0177(3) Uani 1 1 d . H11A H 0.6225 0.4794 0.6843 0.021 Uiso 1 1 calc R C12 C 0.3614(2) 0.43882(12) 0.67914(9) 0.0190(3) Uani 1 1 d . H12A H 0.3705 0.4800 0.6264 0.023 Uiso 1 1 calc R C13 C 0.2185(2) 0.48862(13) 0.73151(10) 0.0234(3) Uani 1 1 d . H13A H 0.2155 0.5647 0.7195 0.028 Uiso 1 1 calc R H13B H 0.1073 0.4587 0.7135 0.028 Uiso 1 1 calc R C14 C 0.2353(2) 0.47394(11) 0.82419(10) 0.0213(3) Uani 1 1 d . C15 C 0.40696(19) 0.48903(11) 0.85915(9) 0.0188(3) Uani 1 1 d . C16 C 0.5522(2) 0.48590(11) 0.80740(9) 0.0174(3) Uani 1 1 d . C17 C 0.7110(2) 0.51239(11) 0.83971(9) 0.0190(3) Uani 1 1 d . H17A H 0.8092 0.5126 0.8047 0.023 Uiso 1 1 calc R C18 C 0.7272(2) 0.53875(11) 0.92356(10) 0.0221(3) Uani 1 1 d . H18A H 0.8365 0.5577 0.9448 0.027 Uiso 1 1 calc R C19 C 0.5876(2) 0.53785(12) 0.97623(9) 0.0215(3) Uani 1 1 d . H19A H 0.6010 0.5547 1.0335 0.026 Uiso 1 1 calc R C20 C 0.4273(2) 0.51209(11) 0.94479(9) 0.0201(3) Uani 1 1 d . loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 O1W 0.0203(6) 0.0431(7) 0.0188(5) 0.0021(5) -0.0001(4) -0.0031(5) O1 0.0297(7) 0.0399(7) 0.0254(6) 0.0043(5) 0.0036(5) -0.0130(5) O2 0.0179(6) 0.0319(6) 0.0238(5) -0.0023(5) 0.0015(4) -0.0039(5) O3 0.0189(6) 0.0300(6) 0.0144(5) 0.0004(4) 0.0023(4) -0.0012(4) O4 0.0166(6) 0.0393(7) 0.0343(6) -0.0069(6) 0.0072(5) -0.0007(5) O5 0.0263(6) 0.0341(6) 0.0221(6) -0.0026(5) 0.0066(4) 0.0015(5) C1 0.0377(10) 0.0225(8) 0.0186(7) 0.0025(6) 0.0027(6) -0.0022(7) C2 0.0377(9) 0.0198(7) 0.0166(7) 0.0004(6) -0.0037(6) 0.0048(6) C3 0.0224(8) 0.0200(7) 0.0211(7) -0.0031(6) -0.0023(6) 0.0027(6) C4 0.0214(8) 0.0151(7) 0.0169(7) -0.0024(6) 0.0015(5) 0.0029(5) C5 0.0231(8) 0.0164(7) 0.0177(7) -0.0027(6) 0.0021(6) -0.0006(6) C6 0.0308(9) 0.0200(7) 0.0224(8) -0.0024(6) 0.0034(6) -0.0025(6) C7 0.0203(8) 0.0190(7) 0.0196(7) -0.0046(6) 0.0022(6) -0.0005(6) C8 0.0189(8) 0.0241(8) 0.0143(7) -0.0009(6) -0.0016(5) -0.0004(6) C9 0.0196(8) 0.0215(8) 0.0157(7) 0.0001(6) 0.0006(6) -0.0015(6) C10 0.0161(7) 0.0218(7) 0.0176(7) -0.0012(6) 0.0012(5) 0.0007(6) C11 0.0165(7) 0.0197(7) 0.0169(7) 0.0010(6) -0.0002(5) -0.0009(5) C12 0.0197(8) 0.0208(8) 0.0164(7) 0.0016(6) -0.0027(5) 0.0001(6) C13 0.0191(8) 0.0237(7) 0.0275(8) -0.0016(6) -0.0054(6) 0.0033(6) C14 0.0200(8) 0.0171(7) 0.0268(8) -0.0034(6) 0.0009(6) 0.0026(6) C15 0.0190(8) 0.0142(7) 0.0232(7) 0.0003(6) -0.0001(6) 0.0015(5) C16 0.0199(8) 0.0140(7) 0.0182(7) 0.0017(6) -0.0004(5) 0.0020(5) C17 0.0187(8) 0.0164(7) 0.0218(7) 0.0012(6) 0.0011(6) 0.0012(6) C18 0.0241(8) 0.0166(7) 0.0255(7) -0.0017(6) -0.0047(6) 0.0010(6) C19 0.0310(9) 0.0186(7) 0.0149(6) 0.0004(6) -0.0040(6) 0.0010(6) C20 0.0260(9) 0.0164(7) 0.0178(7) 0.0005(6) 0.0037(6) 0.0036(6) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0181 0.0091 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0492 0.0322 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle H1WB O1W H1WA 109.4 C6 O1 H1 109.5 C9 O3 H3 109.5 C20 O5 H5 109.5 C2 C1 C6 119.79(15) C2 C1 H1A 120.1 C6 C1 H1A 120.1 C1 C2 C3 121.55(15) C1 C2 H2A 119.2 C3 C2 H2A 119.2 C4 C3 C2 119.78(15) C4 C3 H3A 120.1 C2 C3 H3A 120.1 C3 C4 C5 119.43(14) C3 C4 C10 121.79(14) C5 C4 C10 118.71(13) C6 C5 C4 119.82(14) C6 C5 C7 120.61(14) C4 C5 C7 119.56(13) O1 C6 C1 118.56(14) O1 C6 C5 121.81(15) C1 C6 C5 119.62(15) O2 C7 C5 122.36(14) O2 C7 C8 120.87(14) C5 C7 C8 116.71(13) C7 C8 C9 108.55(12) C7 C8 C12 110.71(12) C9 C8 C12 103.33(11) C7 C8 H8A 111.3 C9 C8 H8A 111.3 C12 C8 H8A 111.3 O3 C9 C8 109.01(12) O3 C9 C10 112.20(12) C8 C9 C10 100.56(11) O3 C9 H9A 111.5 C8 C9 H9A 111.5 C10 C9 H9A 111.5 C4 C10 C9 108.40(12) C4 C10 C11 111.08(11) C9 C10 C11 102.67(11) C4 C10 H10A 111.4 C9 C10 H10A 111.4 C11 C10 H10A 111.4 C16 C11 C12 116.73(12) C16 C11 C10 110.82(12) C12 C11 C10 103.95(11) C16 C11 H11A 108.3 C12 C11 H11A 108.3 C10 C11 H11A 108.3 C13 C12 C11 114.44(12) C13 C12 C8 114.72(13) C11 C12 C8 105.22(11) C13 C12 H12A 107.4 C11 C12 H12A 107.4 C8 C12 H12A 107.4 C14 C13 C12 115.28(13) C14 C13 H13A 108.5 C12 C13 H13A 108.5 C14 C13 H13B 108.5 C12 C13 H13B 108.5 H13A C13 H13B 107.5 O4 C14 C15 122.25(14) O4 C14 C13 121.22(14) C15 C14 C13 116.25(13) C16 C15 C20 119.35(14) C16 C15 C14 120.41(13) C20 C15 C14 120.17(13) C17 C16 C15 119.49(13) C17 C16 C11 119.17(13) C15 C16 C11 120.78(13) C16 C17 C18 120.12(14) C16 C17 H17A 119.9 C18 C17 H17A 119.9 C19 C18 C17 121.32(14) C19 C18 H18A 119.3 C17 C18 H18A 119.3 C18 C19 C20 119.32(13) C18 C19 H19A 120.3 C20 C19 H19A 120.3 O5 C20 C19 118.17(13) O5 C20 C15 121.56(14) C19 C20 C15 120.26(14) loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance O1W H1WB 0.8500 O1W H1WA 0.8503 O1 C6 1.345(2) O1 H1 0.8400 O2 C7 1.2429(19) O3 C9 1.4247(17) O3 H3 0.8400 O4 C14 1.2324(19) O5 C20 1.3503(19) O5 H5 0.8400 C1 C2 1.373(3) C1 C6 1.393(2) C1 H1A 0.9500 C2 C3 1.398(2) C2 H2A 0.9500 C3 C4 1.385(2) C3 H3A 0.9500 C4 C5 1.414(2) C4 C10 1.511(2) C5 C6 1.413(2) C5 C7 1.460(2) C7 C8 1.510(2) C8 C9 1.527(2) C8 C12 1.562(2) C8 H8A 1.0000 C9 C10 1.531(2) C9 H9A 1.0000 C10 C11 1.573(2) C10 H10A 1.0000 C11 C16 1.506(2) C11 C12 1.561(2) C11 H11A 1.0000 C12 C13 1.534(2) C12 H12A 1.0000 C13 C14 1.506(2) C13 H13A 0.9900 C13 H13B 0.9900 C14 C15 1.464(2) C15 C16 1.405(2) C15 C20 1.416(2) C16 C17 1.385(2) C17 C18 1.394(2) C17 H17A 0.9500 C18 C19 1.378(2) C18 H18A 0.9500 C19 C20 1.388(2) C19 H19A 0.9500 loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_site_symmetry_A O1W H1WB O2 0.85 2.01 2.8511(15) 172.1 3_556 O1W H1WA O3 0.85 1.97 2.8191(15) 175.9 4_565 O1 H1 O2 0.84 1.86 2.6048(16) 146.3 . O5 H5 O4 0.84 1.87 2.6141(16) 146.0 . O3 H3 O1W 0.84 1.87 2.6871(15) 163.7 3_646 loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion C6 C1 C2 C3 -0.5(2) C1 C2 C3 C4 1.3(2) C2 C3 C4 C5 -0.9(2) C2 C3 C4 C10 175.92(13) C3 C4 C5 C6 -0.3(2) C10 C4 C5 C6 -177.23(12) C3 C4 C5 C7 178.53(13) C10 C4 C5 C7 1.6(2) C2 C1 C6 O1 179.82(14) C2 C1 C6 C5 -0.7(2) C4 C5 C6 O1 -179.45(14) C7 C5 C6 O1 1.7(2) C4 C5 C6 C1 1.1(2) C7 C5 C6 C1 -177.68(14) C6 C5 C7 O2 -1.3(2) C4 C5 C7 O2 179.92(14) C6 C5 C7 C8 176.00(13) C4 C5 C7 C8 -2.8(2) O2 C7 C8 C9 -143.14(14) C5 C7 C8 C9 39.54(17) O2 C7 C8 C12 104.10(16) C5 C7 C8 C12 -73.23(16) C7 C8 C9 O3 170.38(11) C12 C8 C9 O3 -72.04(13) C7 C8 C9 C10 -71.54(14) C12 C8 C9 C10 46.04(13) C3 C4 C10 C9 146.20(14) C5 C4 C10 C9 -36.93(17) C3 C4 C10 C11 -101.71(16) C5 C4 C10 C11 75.15(17) O3 C9 C10 C4 -174.43(12) C8 C9 C10 C4 69.85(13) O3 C9 C10 C11 67.98(14) C8 C9 C10 C11 -47.75(13) C4 C10 C11 C16 41.49(16) C9 C10 C11 C16 157.17(12) C4 C10 C11 C12 -84.68(13) C9 C10 C11 C12 31.00(14) C16 C11 C12 C13 1.77(18) C10 C11 C12 C13 124.12(13) C16 C11 C12 C8 -125.07(13) C10 C11 C12 C8 -2.72(14) C7 C8 C12 C13 -37.24(16) C9 C8 C12 C13 -153.30(12) C7 C8 C12 C11 89.43(14) C9 C8 C12 C11 -26.62(13) C11 C12 C13 C14 -34.07(19) C8 C12 C13 C14 87.71(16) C12 C13 C14 O4 -142.46(15) C12 C13 C14 C15 43.50(19) O4 C14 C15 C16 167.80(14) C13 C14 C15 C16 -18.2(2) O4 C14 C15 C20 -15.4(2) C13 C14 C15 C20 158.62(13) C20 C15 C16 C17 -4.4(2) C14 C15 C16 C17 172.48(13) C20 C15 C16 C11 166.97(13) C14 C15 C16 C11 -16.2(2) C12 C11 C16 C17 -164.49(13) C10 C11 C16 C17 76.81(17) C12 C11 C16 C15 24.13(19) C10 C11 C16 C15 -94.58(15) C15 C16 C17 C18 2.0(2) C11 C16 C17 C18 -169.51(13) C16 C17 C18 C19 0.9(2) C17 C18 C19 C20 -1.2(2) C18 C19 C20 O5 -179.94(14) C18 C19 C20 C15 -1.3(2) C16 C15 C20 O5 -177.30(13) C14 C15 C20 O5 5.8(2) C16 C15 C20 C19 4.1(2) C14 C15 C20 C19 -172.83(13)