#------------------------------------------------------------------------------ #$Date: 2013-12-28 15:58:47 +0200 (Sat, 28 Dec 2013) $ #$Revision: 91933 $ #$URL: file:///home/coder/svn-repositories/cod/cif/2/00/57/2005700.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2005700 loop_ _publ_author_name 'Yuge, H.' 'Miyamoto, T. K.' _publ_contact_author ; Dr. Hidetaka Yuge Department of Chemistry, School of Science, Kitasato University, Kitasato, Sagamihara, Kanagawa 228, Japan ; _publ_section_title ;(trans-1R,2R-Cyclohexanediamine-N,N')(L-ascorbato-C^2^,O^5^)platinum(II)--Water (1/3) ; _journal_issue 12 _journal_name_full 'Acta Crystallographica Section C' _journal_page_first 3002 _journal_page_last 3005 _journal_volume 52 _journal_year 1996 _chemical_formula_iupac '[Pt (C6 H6 O6) (C6 H14 N2)] , 3H2 O' _chemical_formula_moiety 'C12 H20 N2 O6 Pt1, 3H2 O1' _chemical_formula_sum 'C12 H26 N2 O9 Pt' _chemical_formula_weight 537.44 _space_group_IT_number 4 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall 'P 2yb' _symmetry_space_group_name_H-M 'P 1 21 1' _cell_angle_alpha 90.00 _cell_angle_beta 105.42(2) _cell_angle_gamma 90.00 _cell_formula_units_Z 2 _cell_length_a 6.245(2) _cell_length_b 20.797(2) _cell_length_c 6.7034(14) _cell_measurement_reflns_used 25 _cell_measurement_temperature 293 _cell_measurement_theta_max 19.195 _cell_measurement_theta_min 17.285 _cell_volume 839.3(3) _computing_cell_refinement 'MSC/AFC Diffractometer Control Software' _computing_data_collection ; MSC/AFC Diffractometer Control Software (Molecular Structure Corporation, 1993a) ; _computing_data_reduction 'TEXSAN PROCESS (Molecular Structure Corporation, 1993b)' _computing_molecular_graphics 'ORTEPII (Johnson, 1976)' _computing_structure_refinement 'SHELXL93 (Sheldrick, 1993)' _computing_structure_solution 'SHELXS86 (Sheldrick, 1990)' _diffrn_ambient_temperature 293(2) _diffrn_measurement_device 'Rigaku AFC7R diffractometer' _diffrn_measurement_method \w/2\q _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'rotating anticathode' _diffrn_radiation_type 'Mo K\a' _diffrn_radiation_wavelength 0.71069 _diffrn_reflns_av_R_equivalents 0.0237 _diffrn_reflns_av_sigmaI/netI 0.0285 _diffrn_reflns_limit_h_max 9 _diffrn_reflns_limit_h_min -9 _diffrn_reflns_limit_k_max 31 _diffrn_reflns_limit_k_min -31 _diffrn_reflns_limit_l_max 10 _diffrn_reflns_limit_l_min -10 _diffrn_reflns_number 6671 _diffrn_reflns_theta_max 32.50 _diffrn_reflns_theta_min 3.15 _diffrn_standards_decay_% 3.2 _diffrn_standards_interval_count 150 _diffrn_standards_number 3 _exptl_absorpt_coefficient_mu 8.492 _exptl_absorpt_correction_T_max 1.0000 _exptl_absorpt_correction_T_min 0.8244 _exptl_absorpt_correction_type 'empirical via \y scans (North, Phillips & Mathews, 1968)' _exptl_crystal_colour yellow _exptl_crystal_density_diffrn 2.127 _exptl_crystal_density_meas 2.128 _exptl_crystal_density_method 'flotation in CHBr~3~-CCl~4~' _exptl_crystal_description prism _exptl_crystal_F_000 524 _exptl_crystal_size_max 0.20 _exptl_crystal_size_mid 0.10 _exptl_crystal_size_min 0.10 _refine_diff_density_max 1.766 _refine_diff_density_min -2.609 _refine_ls_abs_structure_details 'Flack (1983)' _refine_ls_abs_structure_Flack -0.024(9) _refine_ls_extinction_coef 0.0062(3) _refine_ls_extinction_method 'SHELXL93 (Sheldrick, 1993)' _refine_ls_goodness_of_fit_all 1.170 _refine_ls_goodness_of_fit_obs 1.188 _refine_ls_hydrogen_treatment 'refall except H(C5) (refU)' _refine_ls_matrix_type full _refine_ls_number_parameters 319 _refine_ls_number_reflns 6068 _refine_ls_number_restraints 1 _refine_ls_restrained_S_all 1.170 _refine_ls_restrained_S_obs 1.188 _refine_ls_R_factor_all 0.0327 _refine_ls_R_factor_obs 0.0283 _refine_ls_shift/esd_max 0.002 _refine_ls_shift/esd_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_scheme 'calc w = 1/[\s^2^(Fo^2^)+4.6220P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_wR_factor_all 0.0652 _refine_ls_wR_factor_obs 0.0638 _reflns_number_observed 5654 _reflns_number_total 6068 _reflns_observed_criterion >2sigma(I) _[local]_cod_data_source_file ab1376.cif _[local]_cod_data_source_block default _[local]_cod_cif_authors_sg_H-M 'P 21' _[local]_cod_cif_authors_sg_Hall 'P 2y1' _[local]_cod_chemical_formula_sum_orig 'C12 H26 N2 O9 Pt1' _cod_database_code 2005700 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y+1/2, -z' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_thermal_displace_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_type_symbol Pt 0.05413(3) 0.00000(2) 0.13784(2) 0.01912(5) Uani d . Pt N1 0.1731(10) -0.0592(2) 0.3960(8) 0.0249(9) Uani d . N N2 0.2394(8) -0.0598(2) 0.0111(8) 0.0217(9) Uani d . N C11 0.2253(10) -0.1222(3) 0.3117(9) 0.0228(10) Uani d . C C12 0.3671(10) -0.1061(3) 0.1644(9) 0.0228(11) Uani d . C C13 0.4322(13) -0.1673(3) 0.0686(10) 0.0328(14) Uani d . C C14 0.5424(15) -0.2159(4) 0.2319(12) 0.040(2) Uani d . C C15 0.3970(15) -0.2307(3) 0.3752(13) 0.040(2) Uani d . C C16 0.3322(13) -0.1707(3) 0.4747(11) 0.0300(12) Uani d . C O1 0.0779(8) 0.1561(2) -0.1371(8) 0.0322(10) Uani d . O O2 0.0349(8) 0.0242(2) -0.3007(7) 0.0269(8) Uani d . O O3 -0.3992(8) -0.0212(2) -0.2192(7) 0.0301(9) Uani d . O O4 -0.2313(7) 0.1356(2) -0.0438(7) 0.0256(8) Uani d . O O5 -0.1158(7) 0.0548(2) 0.2924(6) 0.0246(8) Uani d . O O6 -0.4312(11) 0.1026(3) 0.4999(8) 0.0461(15) Uani d . O C1 -0.0582(10) 0.1169(3) -0.1138(9) 0.0236(10) Uani d . C C2 -0.0662(10) 0.0465(2) -0.1537(8) 0.0204(9) Uani d . C C3 -0.2901(10) 0.0272(3) -0.1514(8) 0.0224(10) Uani d . C C4 -0.3708(10) 0.0812(3) -0.0326(8) 0.0223(10) Uani d . C C5 -0.3423(9) 0.0643(2) 0.1929(9) 0.0222(10) Uani d . C C6 -0.4330(12) 0.1205(3) 0.2970(10) 0.0296(12) Uani d . C O11 0.1339(18) 0.2601(3) 0.1844(16) 0.068(2) Uani d . O O12 0.1075(11) 0.3837(3) 0.3239(11) 0.0432(13) Uani d . O O13 0.1500(10) 0.1574(3) 0.4653(10) 0.0411(12) Uani d . O H1 0.281(13) -0.046(3) 0.462(12) 0.02(2) Uiso d . H H2 0.058(16) -0.065(4) 0.457(14) 0.05(3) Uiso d . H H3 0.332(15) -0.040(4) -0.061(14) 0.04(2) Uiso d . H H4 0.156(13) -0.079(4) -0.076(12) 0.03(2) Uiso d . H H5 0.091(12) -0.140(3) 0.231(11) 0.02(2) Uiso d . H H6 0.522(10) -0.090(3) 0.247(9) 0.005(13) Uiso d . H H7 0.529(12) -0.157(3) -0.004(11) 0.02(2) Uiso d . H H8 0.303(16) -0.183(4) -0.036(14) 0.05(3) Uiso d . H H9 0.666(15) -0.201(4) 0.311(13) 0.04(2) Uiso d . H H10 0.585(17) -0.251(5) 0.180(16) 0.07(3) Uiso d . H H11 0.275(17) -0.243(5) 0.301(16) 0.05(3) Uiso d . H H12 0.457(12) -0.259(4) 0.478(14) 0.02(2) Uiso d . H H13 0.442(15) -0.156(4) 0.552(14) 0.04(2) Uiso d . H H14 0.234(16) -0.184(4) 0.556(14) 0.04(2) Uiso d . H H41 -0.523(12) 0.090(3) -0.101(11) 0.02(2) Uiso d . H H51 -0.4256(9) 0.0250(2) 0.2026(9) 0.02(2) Uiso calc R H H61 -0.604(11) 0.126(3) 0.198(10) 0.003(15) Uiso d . H H62 -0.326(12) 0.160(4) 0.313(11) 0.02(2) Uiso d . H H20 -0.018(18) 0.034(5) -0.429(17) 0.08(4) Uiso d . H H60 -0.528(15) 0.117(5) 0.524(14) 0.04(3) Uiso d . H H111 0.121(18) 0.241(5) 0.262(16) 0.04(3) Uiso d . H H112 0.14(2) 0.240(7) 0.09(2) 0.09(5) Uiso d . H H121 0.114(19) 0.352(6) 0.241(18) 0.07(4) Uiso d . H H122 0.19(2) 0.405(8) 0.33(2) 0.11(6) Uiso d . H H131 0.075(16) 0.128(5) 0.425(15) 0.05(3) Uiso d . H H132 0.132(17) 0.163(5) 0.604(17) 0.07(3) Uiso d . H loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 Pt 0.02083(8) 0.01843(7) 0.01803(7) 0.0029(2) 0.00506(5) 0.0006(2) N1 0.029(3) 0.024(2) 0.022(2) 0.006(2) 0.006(2) 0.005(2) N2 0.022(2) 0.021(2) 0.022(2) 0.001(2) 0.005(2) 0.004(2) C11 0.027(3) 0.021(2) 0.021(2) 0.001(2) 0.006(2) 0.002(2) C12 0.026(3) 0.019(2) 0.023(3) 0.006(2) 0.005(2) 0.003(2) C13 0.044(4) 0.031(3) 0.025(3) 0.012(3) 0.013(3) 0.000(2) C14 0.049(4) 0.036(4) 0.038(4) 0.021(3) 0.012(3) 0.002(3) C15 0.054(5) 0.021(3) 0.042(4) 0.008(3) 0.008(3) 0.006(3) C16 0.036(3) 0.026(3) 0.029(3) 0.004(2) 0.009(3) 0.006(2) O1 0.036(2) 0.026(2) 0.036(2) -0.006(2) 0.013(2) 0.000(2) O2 0.033(2) 0.028(2) 0.022(2) 0.008(2) 0.010(2) 0.0017(15) O3 0.028(2) 0.029(2) 0.032(2) -0.005(2) 0.007(2) -0.004(2) O4 0.034(2) 0.017(2) 0.029(2) 0.003(2) 0.013(2) -0.0003(15) O5 0.023(2) 0.029(2) 0.021(2) 0.005(2) 0.006(2) 0.002(2) O6 0.054(4) 0.061(4) 0.025(2) 0.028(3) 0.015(2) 0.008(2) C1 0.026(3) 0.023(2) 0.021(2) 0.002(2) 0.006(2) 0.003(2) C2 0.027(3) 0.020(2) 0.014(2) 0.005(2) 0.006(2) 0.005(2) C3 0.025(3) 0.026(2) 0.012(2) 0.003(2) -0.002(2) 0.001(2) C4 0.023(2) 0.021(2) 0.019(2) 0.003(2) 0.001(2) 0.001(2) C5 0.024(2) 0.012(2) 0.032(3) 0.003(2) 0.010(2) 0.003(2) C6 0.034(3) 0.032(3) 0.025(3) 0.010(3) 0.011(2) 0.001(2) O11 0.108(7) 0.033(3) 0.062(5) -0.005(4) 0.021(5) -0.001(3) O12 0.038(3) 0.036(3) 0.055(4) 0.004(2) 0.012(3) 0.008(3) O13 0.041(3) 0.040(3) 0.046(3) -0.009(2) 0.019(2) -0.007(2) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source Pt Pt -1.7033 8.3905 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_publ_flag C2 Pt N1 170.7(2) yes C2 Pt N2 89.7(2) yes C2 Pt O5 96.3(2) yes O5 Pt N1 91.6(2) yes O5 Pt N2 174.0(2) yes C3 Pt N1 143.4(2) yes C3 Pt N2 106.1(2) yes C3 Pt O5 79.2(2) yes C3 Pt C2 34.9(2) yes N1 Pt N2 82.5(2) yes Pt C2 C1 107.2(4) yes Pt C2 C3 88.4(3) yes Pt C2 O2 112.6(4) yes Pt C3 C2 56.7(3) yes Pt O5 C5 115.7(3) yes Pt N1 C11 105.5(4) yes Pt N2 C12 111.7(4) yes C1 C2 C3 104.8(5) yes C2 C3 C4 104.6(5) yes C3 C4 O4 105.1(5) yes C1 O4 C4 110.2(4) yes O4 C1 C2 110.8(5) yes O1 C1 C2 128.8(6) yes O1 C1 O4 120.4(5) yes O2 C2 C3 122.4(5) yes O2 C2 C1 117.2(5) yes O3 C3 C2 131.2(5) yes O3 C3 C4 124.2(6) yes O4 C4 C5 108.8(4) yes C3 C4 C5 112.3(4) yes C4 C5 C6 108.3(4) yes C5 C6 O6 109.0(5) yes C4 C5 O5 110.0(5) yes O5 C5 C6 109.6(5) yes N1 C11 C16 114.3(5) yes N1 C11 C12 106.0(5) yes N2 C12 C13 113.9(5) yes N2 C12 C11 107.1(5) yes C16 C11 C12 113.2(5) yes C11 C12 C13 110.7(5) yes C12 C13 C14 111.9(6) yes C13 C14 C15 111.1(6) yes C14 C15 C16 112.7(6) yes C11 C16 C15 110.5(6) yes Pt N1 H1 110(6) no C11 N1 H1 107(6) no C11 N1 H2 109(6) no Pt N1 H2 107(6) no H1 N1 H2 118(8) no Pt N2 H3 117(5) no C12 N2 H3 110(5) no Pt N2 H4 106(6) no C12 N2 H4 109(6) no H3 N2 H4 103(8) no N1 C11 H5 108(4) no C16 C11 H5 108(4) no C12 C11 H5 107(4) no N2 C12 H6 115(3) no C13 C12 H6 101(3) no C11 C12 H6 110(3) no C14 C13 H7 108(5) no C12 C13 H7 109(4) no C14 C13 H8 116(5) no C12 C13 H8 108(6) no H7 C13 H8 104(7) no C13 C14 H9 112(6) no C15 C14 H9 105(6) no C13 C14 H10 114(7) no C15 C14 H10 112(7) no H9 C14 H10 103(8) no C14 C15 H11 107(7) no C16 C15 H11 102(7) no C14 C15 H12 115(5) no C16 C15 H12 108(5) no H11 C15 H12 112(8) no C11 C16 H13 111(7) no C15 C16 H13 108(6) no C11 C16 H14 112(5) no C15 C16 H14 107(5) no H13 C16 H14 108(8) no C2 O2 H20 121(7) no C6 O6 H60 108(7) no O4 C4 H41 111(4) no C5 C4 H41 111(4) no C3 C4 H41 108(4) no O5 C5 H51 109.7(3) no C4 C5 H51 109.6(3) no C6 C5 H51 109.7(3) no O6 C6 H61 112(3) no C5 C6 H61 103(3) no O6 C6 H62 106(4) no C5 C6 H62 110(4) no H61 C6 H62 118(5) no H111 O11 H112 112(10) no H121 O12 H122 111(10) no H131 O13 H132 103(9) no loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_publ_flag Pt N1 2.093(5) yes Pt N2 2.033(5) yes Pt C2 2.130(5) yes Pt O5 2.020(4) yes Pt C3 2.547(6) yes N1 C11 1.495(7) yes N2 C12 1.477(8) yes C11 C16 1.507(8) yes C11 C12 1.529(9) yes C12 C13 1.528(9) yes C13 C14 1.515(10) yes C14 C15 1.519(12) yes C15 C16 1.519(10) yes O1 C1 1.217(7) yes O2 C2 1.384(7) yes O3 C3 1.233(6) yes O4 C1 1.345(7) yes O4 C4 1.442(7) yes O5 C5 1.408(7) yes O6 C6 1.408(8) yes C1 C2 1.488(8) yes C2 C3 1.458(9) yes C3 C4 1.537(8) yes C4 C5 1.515(8) yes C5 C6 1.545(8) yes N1 H1 0.75(8) no N1 H2 0.92(10) no N2 H3 0.94(9) no N2 H4 0.78(8) no C11 H5 0.95(7) no C12 H6 1.04(6) no C13 H7 0.90(7) no C13 H8 0.97(9) no C14 H9 0.87(9) no C14 H10 0.88(11) no C15 H11 0.83(10) no C15 H12 0.91(9) no C16 H13 0.80(9) no C16 H14 0.96(9) no O2 H20 0.86(11) no O6 H60 0.73(9) no C4 H41 0.95(7) no C5 H51 0.98 no C6 H61 1.10(6) no C6 H62 1.05(7) no O11 H111 0.67(10) no O11 H112 0.80(14) no O12 H121 0.88(12) no O12 H122 0.68(15) no O13 H131 0.77(10) no O13 H132 0.97(11) no loop_ _geom_contact_atom_site_label_1 _geom_contact_atom_site_label_2 _geom_contact_distance _geom_contact_site_symmetry_2 _geom_contact_publ_flag Pt C3 2.547(6) . no O11 O12 2.755(10) . yes O11 O13 2.830(11) . yes O1 O11 3.008(10) . yes O5 O13 2.762(8) . yes O1 O13 2.819(8) 1_554 yes O2 O5 2.715(6) 1_554 yes O6 O13 2.806(8) 1_455 yes O3 O12 2.899(8) 2_545 yes N1 O2 2.970(8) 1_556 yes N2 O12 2.921(8) 2_545 yes O1 H112 2.26(15) . no O11 H121 1.95(12) . no O5 H131 1.99(11) . no O13 H111 2.19(10) . no O1 H132 1.86(11) 1_554 no O5 H20 1.86(11) 1_556 no O13 H60 2.12(9) 1_656 no O3 H122 2.25(15) 2_545 no O2 H2 2.50(10) 1_554 no O12 H4 2.15(7) 2 no loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion _geom_torsion_publ_flag C1 C2 C3 C4 -20.4(5) no C3 C4 C5 C6 -178.6(5) no C4 C5 C6 O6 173.4(5) no C3 C4 C5 O5 61.7(6) no C4 O4 C1 O1 179.0(5) no C4 O4 C1 C2 -0.7(6) no O1 C1 C2 O2 -26.3(9) no O4 C1 C2 O2 153.5(5) no O1 C1 C2 C3 -165.6(6) no O4 C1 C2 C3 14.1(6) no O2 C2 C3 O3 25.0(9) no C1 C2 C3 O3 161.8(6) no O2 C2 C3 C4 -157.2(5) no C1 O4 C4 C5 108.2(5) no C1 O4 C4 C3 -12.2(6) no O3 C3 C4 O4 -161.6(5) no C2 C3 C4 O4 20.4(5) no O3 C3 C4 C5 80.3(6) no C2 C3 C4 C5 -97.7(5) no O4 C4 C5 O5 -54.2(5) no O4 C4 C5 C6 65.5(6) no O5 C5 C6 O6 -66.7(7) no _journal_paper_doi 10.1107/S0108270196009493