#------------------------------------------------------------------------------ #$Date: 2012-02-03 19:16:24 +0200 (Fri, 03 Feb 2012) $ #$Revision: 32112 $ #$URL: file:///home/coder/svn-repositories/cod/cif/2/00/81/2008108.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2008108 loop_ _publ_author_name 'Ueda, Kazumasa' 'Iwamatsu, Masaki' 'Sugimoto, Toyonari' _publ_section_title ; 1,3,4,6-Tetrathiapentalene-5-spiro-2'-indan-2,1',3'-trione and its 2-thione analogue ; _journal_issue 1 _journal_name_full 'Acta Crystallographica Section C' _journal_page_first IUC9800077 _journal_volume 55 _journal_year 1999 _chemical_formula_moiety 'C12 H4 O2 S5' _chemical_formula_sum 'C12 H4 O2 S5' _chemical_formula_weight 340.46 _space_group_IT_number 14 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-P 2ybc' _symmetry_space_group_name_H-M 'P 1 21/c 1' _audit_creation_method 'from TEXRAY.INF file' _cell_angle_alpha 90 _cell_angle_beta 94.820(10) _cell_angle_gamma 90 _cell_formula_units_Z 4 _cell_length_a 8.649(2) _cell_length_b 9.679(2) _cell_length_c 15.721(2) _cell_measurement_reflns_used 25 _cell_measurement_temperature 293.2 _cell_measurement_theta_max 28.3 _cell_measurement_theta_min 27.7 _cell_volume 1311.4(4) _computing_cell_refinement 'MSC/AFC Diffractometer Control Software' _computing_data_collection ; MSC/AFC Diffractometer Control Software (Molecular Structure Corporation, 1988) ; _computing_data_reduction 'TEXSAN (Molecular Structure Corporation, 1993)' _computing_molecular_graphics 'ORTEPII (Johnson, 1976)' _computing_publication_material TEXSAN _computing_structure_refinement TEXSAN _computing_structure_solution 'SHELXS86 (Sheldrick, 1985)' _diffrn_ambient_temperature 293.2 _diffrn_measurement_device_type 'Rigaku AFC-7R' _diffrn_measurement_method \w-2\q _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'Rigaku rotating anode' _diffrn_radiation_type 'Cu K\a' _diffrn_radiation_wavelength 1.5418 _diffrn_reflns_av_R_equivalents 0.099 _diffrn_reflns_av_sigmaI/netI 0.040 _diffrn_reflns_limit_h_max 10 _diffrn_reflns_limit_h_min 0 _diffrn_reflns_limit_k_max 11 _diffrn_reflns_limit_k_min 0 _diffrn_reflns_limit_l_max 18 _diffrn_reflns_limit_l_min -18 _diffrn_reflns_number 2604 _diffrn_reflns_reduction_process 'Lp corrections applied' _diffrn_reflns_theta_max 70.03 _diffrn_reflns_theta_min 2.82 _diffrn_standards_decay_% 0.27 _diffrn_standards_interval_count 150 _diffrn_standards_number 3 _exptl_absorpt_coefficient_mu 8.091 _exptl_absorpt_correction_T_max 0.667 _exptl_absorpt_correction_T_min 0.424 _exptl_absorpt_correction_type '\y scan' _exptl_absorpt_process_details '(North et al., 1968)' _exptl_crystal_colour 'dark red' _exptl_crystal_density_diffrn 1.724 _exptl_crystal_density_method 'not measured' _exptl_crystal_description prismatic _exptl_crystal_F_000 688.00 _exptl_crystal_size_max 0.12 _exptl_crystal_size_mid 0.10 _exptl_crystal_size_min 0.05 _refine_diff_density_max 0.37 _refine_diff_density_min -0.41 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.272 _refine_ls_hydrogen_treatment refall _refine_ls_matrix_type full _refine_ls_number_constraints 0 _refine_ls_number_parameters 188 _refine_ls_number_reflns 2099 _refine_ls_number_restraints 0 _refine_ls_R_factor_all 0.041 _refine_ls_R_factor_gt 0.041 _refine_ls_shift/su_max 0.015 _refine_ls_shift/su_mean 0.001 _refine_ls_structure_factor_coef F _refine_ls_weighting_details 'w = 1/[\s^2^(Fo) + 0.00160|Fo|^2^]' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_ref 0.061 _reflns_number_gt 2099 _reflns_number_total 2439 _reflns_threshold_expression I>2\s(I) _[local]_cod_data_source_file qa0074.cif _[local]_cod_data_source_block 1 _[local]_cod_cif_authors_sg_H-M 'P 21/c' _cod_database_code 2008108 loop_ _symmetry_equiv_pos_as_xyz x,y,z -x,1/2+y,1/2-z -x,-y,-z x,1/2-y,1/2+z loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_thermal_displace_type _atom_site_calc_flag _atom_site_calc_attached_atom _atom_site_refinement_flags _atom_site_occupancy S1 0.10196(8) 0.23902(7) 1.01948(5) 0.0387(2) Uani d . . 1.00 S2 0.28114(9) -0.02247(7) 1.01794(5) 0.0463(2) Uani d . . 1.00 S3 0.03102(7) 0.17530(7) 1.20584(4) 0.0346(2) Uani d . . 1.00 S4 0.20830(8) -0.07799(7) 1.20373(5) 0.0388(2) Uani d . . 1.00 S5 0.07438(8) 0.00490(8) 1.36362(5) 0.0436(2) Uani d . . 1.00 O1 0.1931(3) 0.0980(2) 0.83420(10) 0.0483(6) Uani d . . 1.00 O2 0.4731(3) 0.2466(3) 1.0885(2) 0.0638(8) Uani d . . 1.00 C1 0.2755(3) 0.1566(3) 0.9824(2) 0.0344(7) Uani d . . 1.00 C2 0.1112(3) 0.1359(3) 1.1118(2) 0.0345(6) Uani d . . 1.00 C3 0.1928(3) 0.0182(3) 1.1113(2) 0.0375(7) Uani d . . 1.00 C4 0.1014(3) 0.0312(3) 1.2628(2) 0.0322(6) Uani d . . 1.00 C5 0.2779(3) 0.1629(3) 0.8842(2) 0.0327(6) Uani d . . 1.00 C6 0.4223(3) 0.2388(3) 1.0155(2) 0.0376(7) Uani d . . 1.00 C7 0.4853(3) 0.3019(3) 0.9407(2) 0.0337(6) Uani d . . 1.00 C8 0.6124(3) 0.3893(3) 0.9377(2) 0.0476(8) Uani d . . 1.00 C9 0.6522(4) 0.4310(4) 0.8590(3) 0.0536(9) Uani d . . 1.00 C10 0.5722(4) 0.3837(4) 0.7840(2) 0.0502(9) Uani d . . 1.00 C11 0.4485(3) 0.2952(3) 0.7859(2) 0.0409(8) Uani d . . 1.00 C12 0.4047(3) 0.2564(3) 0.8660(2) 0.0313(6) Uani d . . 1.00 H8 0.671(4) 0.426(4) 0.994(2) 0.047(9) Uiso calc . . 1.00 H9 0.743(6) 0.489(5) 0.856(3) 0.070(10) Uiso calc . . 1.00 H10 0.608(5) 0.413(4) 0.731(3) 0.070(10) Uiso calc . . 1.00 H11 0.397(4) 0.259(4) 0.734(3) 0.054(10) Uiso calc . . 1.00 loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 S1 0.0387(4) 0.0346(4) 0.0438(4) 0.0093(3) 0.0103(3) 0.0074(3) S2 0.0580(5) 0.0305(4) 0.0539(5) 0.0110(3) 0.0258(4) 0.0053(3) S3 0.0328(3) 0.0315(4) 0.0402(4) 0.0044(2) 0.0077(3) -0.0009(3) S4 0.0385(4) 0.0301(4) 0.0493(4) 0.0059(3) 0.0118(3) 0.0088(3) S5 0.0449(4) 0.0478(4) 0.0380(4) -0.0047(3) 0.0029(3) 0.0016(3) O1 0.0450(10) 0.0510(10) 0.0480(10) -0.0151(10) -0.0027(9) -0.0072(10) O2 0.0600(10) 0.096(2) 0.0350(10) -0.0080(10) -0.0030(10) -0.0010(10) C1 0.0350(10) 0.0300(10) 0.0390(10) 0.0050(10) 0.0090(10) 0.0020(10) C2 0.0340(10) 0.0290(10) 0.0420(10) 0.0030(10) 0.0080(10) 0.0030(10) C3 0.0390(10) 0.0290(10) 0.046(2) 0.0030(10) 0.0130(10) 0.0060(10) C4 0.0250(10) 0.0290(10) 0.0430(10) -0.0044(9) 0.0020(10) -0.0010(10) C5 0.0320(10) 0.0320(10) 0.0350(10) 0.0020(10) 0.0028(10) -0.0010(10) C6 0.0360(10) 0.0410(10) 0.036(2) 0.0040(10) 0.0000(10) -0.0030(10) C7 0.0280(10) 0.0310(10) 0.0410(10) 0.0040(10) -0.0010(10) -0.0020(10) C8 0.0330(10) 0.043(2) 0.067(2) -0.0030(10) 0.0000(10) -0.0050(10) C9 0.0350(10) 0.045(2) 0.082(3) -0.0060(10) 0.013(2) 0.006(2) C10 0.0390(10) 0.055(2) 0.059(2) 0.0060(10) 0.0170(10) 0.021(2) C11 0.0340(10) 0.049(2) 0.041(2) 0.0080(10) 0.0060(10) 0.0090(10) C12 0.0260(10) 0.0310(10) 0.0360(10) 0.0044(9) 0.0022(10) 0.0035(10) loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_1 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag S1 C1 . . 1.837(3) yes S1 C2 . . 1.758(3) yes S2 C1 . . 1.820(3) yes S2 C3 . . 1.755(3) yes S3 C2 . . 1.727(3) yes S3 C4 . . 1.740(3) yes S4 C3 . . 1.721(3) yes S4 C4 . . 1.726(3) yes S5 C4 . . 1.641(3) yes O1 C5 . . 1.206(3) yes O2 C6 . . 1.197(4) yes C1 C5 . . 1.548(4) yes C1 C6 . . 1.550(4) yes C2 C3 . . 1.340(4) yes C5 C12 . . 1.469(4) yes C6 C7 . . 1.470(4) yes C7 C8 . . 1.391(4) yes C7 C12 . . 1.385(4) yes C8 C9 . . 1.373(5) yes C8 H8 . . 1.04(3) no C9 C10 . . 1.394(5) yes C9 H9 . . 0.97(5) no C10 C11 . . 1.373(4) yes C10 H10 . . 0.95(4) no C11 C12 . . 1.396(4) yes C11 H11 . . 0.96(4) no loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.018 0.009 ;International Tables for Crystallography (1992, Vol. C, Tables 4.2.6.8 and 6.1.1.1) ; H H 0.000 0.000 ;International Tables for Crystallography (1992, Vol. C, Table 6.1.1.2) ; S S 0.333 0.557 ;International Tables for Crystallography (1992, Vol. C, Tables 4.2.6.8 and 6.1.1.1) ; O O 0.049 0.032 ;International Tables for Crystallography (1992, Vol. C, Tables 4.2.6.8 and 6.1.1.1) ; loop_ _diffrn_standard_refln_index_h _diffrn_standard_refln_index_k _diffrn_standard_refln_index_l -1 2 0 -2 2 0 -1 3 -1 loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_publ_flag C1 S1 C2 91.90(10) yes C1 S2 C3 92.30(10) yes C2 S3 C4 96.60(10) yes C3 S4 C4 96.70(10) yes S1 C1 S2 108.50(10) yes S1 C1 C5 112.3(2) yes S1 C1 C6 109.8(2) yes S2 C1 C5 109.9(2) yes S2 C1 C6 112.7(2) yes C5 C1 C6 103.6(2) yes S1 C2 S3 126.0(2) yes S1 C2 C3 117.7(2) yes S3 C2 C3 116.2(2) yes S2 C3 S4 125.2(2) yes S2 C3 C2 117.5(2) yes S4 C3 C2 117.3(2) yes S3 C4 S4 113.2(2) yes S3 C4 S5 123.3(2) yes S4 C4 S5 123.4(2) yes O1 C5 C1 124.9(2) yes O1 C5 C12 128.1(3) yes C1 C5 C12 106.9(2) yes O2 C6 C1 125.3(3) yes O2 C6 C7 127.6(3) yes C1 C6 C7 107.1(2) yes C6 C7 C8 128.8(3) yes C6 C7 C12 110.6(2) yes C8 C7 C12 120.5(3) yes C7 C8 C9 117.9(3) yes C7 C8 H8 120(2) no C9 C8 H8 121(2) no C8 C9 C10 121.5(3) yes C8 C9 H9 118(2) no C10 C9 H9 119(2) no C9 C10 C11 121.3(3) yes C9 C10 H10 117(2) no C11 C10 H10 121(2) no C10 C11 C12 117.3(3) yes C10 C11 H11 120(2) no C12 C11 H11 121(2) no C5 C12 C7 111.2(2) yes C5 C12 C11 127.2(3) yes C7 C12 C11 121.6(3) yes loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion _geom_torsion_publ_flag S1 C1 S2 C3 -32.4(2) yes S1 C1 C5 O1 -70.6(3) yes S1 C1 C5 C12 111.7(2) yes S1 C1 C6 O2 68.3(4) yes S1 C1 C6 C7 -112.3(2) yes S1 C2 S3 C4 -176.5(2) yes S1 C2 C3 S2 -0.6(3) yes S1 C2 C3 S4 177.10(10) yes S2 C1 S1 C2 32.1(2) yes S2 C1 C5 O1 50.4(3) yes S2 C1 C5 C12 -127.4(2) yes S2 C1 C6 O2 -52.8(4) yes S2 C1 C6 C7 126.6(2) yes S2 C3 S4 C4 177.3(2) yes S2 C3 C2 S3 -178.00(10) yes S3 C2 S1 C1 157.1(2) yes S3 C2 C3 S4 -0.3(3) yes S3 C4 S4 C3 0.7(2) yes S4 C3 S2 C1 -156.4(2) yes S4 C4 S3 C2 -0.8(2) yes S5 C4 S3 C2 177.0(2) yes S5 C4 S4 C3 -177.1(2) yes O2 C6 C1 C5 -171.5(3) yes O2 C6 C7 C8 -3.4(5) yes O2 C6 C7 C12 173.1(3) yes O1 C5 C1 C6 171.0(3) yes O1 C5 C12 C7 -174.3(3) yes O1 C5 C12 C11 3.5(5) yes C1 S1 C2 C3 -20.0(3) yes C1 S2 C3 C2 21.1(3) yes C1 C5 C12 C7 3.4(3) yes C1 C5 C12 C11 -178.8(3) yes C1 C6 C7 C8 177.3(3) yes C1 C6 C7 C12 -6.2(3) yes C2 S1 C1 C5 153.8(2) yes C2 S1 C1 C6 -91.5(2) yes C2 C3 S4 C4 -0.3(3) yes C3 S2 C1 C5 -155.6(2) yes C3 S2 C1 C6 89.4(2) yes C3 C2 S3 C4 0.6(2) yes C5 C1 C6 C7 7.8(3) yes C5 C12 C7 C6 1.8(3) yes C5 C12 C7 C8 178.6(2) yes C5 C12 C11 C10 -179.5(3) yes C6 C1 C5 C12 -6.8(3) yes C6 C7 C8 C9 177.6(3) yes C6 C7 C12 C11 -176.1(2) yes C7 C8 C9 C10 -2.4(5) yes C7 C12 C11 C10 -1.9(4) yes C8 C7 C12 C11 0.7(4) yes C8 C9 C10 C11 1.1(5) yes C9 C8 C7 C12 1.5(4) yes C9 C10 C11 C12 1.0(5) yes