#------------------------------------------------------------------------------ #$Date: 2011-09-10 06:16:28 +0300 (Sat, 10 Sep 2011) $ #$Revision: 25271 $ #$URL: file:///home/coder/svn-repositories/cod/cif/2/2008323.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2008323 loop_ _publ_author_name 'Singh, A.' 'Parmar, V. S.' 'Errington, W.' 'Howarth, O. W.' 'Lawrie, S.' _publ_section_title ; Diosbulbin B, a constituent of Dioscorea pentaphylla ; _journal_issue 4 _journal_name_full 'Acta Crystallographica Section C' _journal_page_first 559 _journal_page_last 561 _journal_volume 55 _journal_year 1999 _chemical_formula_sum 'C19 H20 O6' _chemical_formula_weight 344.35 _chemical_name_common Diosbulbin-B _chemical_name_systematic ; ? ; _space_group_IT_number 19 _symmetry_cell_setting orthorhombic _symmetry_space_group_name_Hall 'P 2ac 2ab' _symmetry_space_group_name_H-M 'P 21 21 21' _audit_creation_method SHELXL97 _cell_angle_alpha 90.00 _cell_angle_beta 90.00 _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 8.915(4) _cell_length_b 10.623(4) _cell_length_c 17.243(5) _cell_measurement_reflns_used 4018 _cell_measurement_temperature 190(2) _cell_measurement_theta_max 24.99 _cell_measurement_theta_min 2.25 _cell_volume 1633.0(11) _computing_cell_refinement 'SAINT (Siemens, 1995)' _computing_data_collection 'SMART (Siemens, 1994)' _computing_data_reduction SAINT _computing_molecular_graphics SHELXTL/PC _computing_publication_material SHELXTL/PC _computing_structure_refinement 'SHELXL97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXTL/PC (Sheldrick, 1994)' _diffrn_ambient_temperature 190(2) _diffrn_detector_area_resol_mean 8.192 _diffrn_measured_fraction_theta_full 0.995 _diffrn_measured_fraction_theta_max 0.995 _diffrn_measurement_device_type 'Siemens SMART CCD area-detector' _diffrn_measurement_method \w-scans _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'normal-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.057 _diffrn_reflns_av_sigmaI/netI 0.050 _diffrn_reflns_limit_h_max 10 _diffrn_reflns_limit_h_min -10 _diffrn_reflns_limit_k_max 9 _diffrn_reflns_limit_k_min -12 _diffrn_reflns_limit_l_max 16 _diffrn_reflns_limit_l_min -20 _diffrn_reflns_number 8492 _diffrn_reflns_theta_full 24.99 _diffrn_reflns_theta_max 24.99 _diffrn_reflns_theta_min 2.25 _diffrn_standards_decay_% nil _exptl_absorpt_coefficient_mu 0.104 _exptl_absorpt_correction_type none _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.401 _exptl_crystal_density_method 'not measured' _exptl_crystal_description needle _exptl_crystal_F_000 728 _exptl_crystal_size_max 0.30 _exptl_crystal_size_mid 0.16 _exptl_crystal_size_min 0.15 _refine_diff_density_max 0.19 _refine_diff_density_min -0.18 _refine_ls_abs_structure_details 'Flack (1983)' _refine_ls_abs_structure_Flack 0.3(13) _refine_ls_extinction_coef 0.0090(12) _refine_ls_extinction_method SHELXL _refine_ls_goodness_of_fit_ref 1.106 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 228 _refine_ls_number_reflns 2872 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.106 _refine_ls_R_factor_all 0.064 _refine_ls_R_factor_gt 0.044 _refine_ls_shift/su_max 0.001 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_scheme 'calc w=1/[\s^2^(Fo^2^)+(0.0313P)^2^+0.5866P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_wR_factor_ref 0.097 _reflns_number_gt 2376 _reflns_number_total 2872 _reflns_threshold_expression I>2\s(I) _[local]_cod_data_source_file bm1291.cif _[local]_cod_data_source_block asj _cod_original_cell_volume 1633.0(10) _cod_database_code 2008323 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x+1/2, -y, z+1/2' '-x, y+1/2, -z+1/2' 'x+1/2, -y+1/2, -z' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_type_symbol O1 0.2389(2) 0.92433(19) 0.61399(12) 0.0447(5) Uani d . 1 O O2 0.0941(3) 0.7996(2) 0.68594(15) 0.0614(7) Uani d . 1 O O3 0.3896(2) 0.86110(17) 0.89606(12) 0.0415(5) Uani d . 1 O O4 0.16591(19) 0.92667(17) 0.85451(11) 0.0371(5) Uani d . 1 O O5 0.44260(19) 1.11590(16) 0.94399(9) 0.0308(4) Uani d . 1 O O6 0.9099(2) 1.01694(18) 1.01976(11) 0.0413(5) Uani d . 1 O C1 0.3599(3) 1.1160(3) 0.65927(14) 0.0364(7) Uani d . 1 C H1A 0.3586 1.2089 0.6554 0.044 Uiso calc R 1 H H1B 0.4629 1.0867 0.6478 0.044 Uiso calc R 1 H C2 0.2509(3) 1.0602(3) 0.60041(16) 0.0411(7) Uani d . 1 C H2 0.2840 1.0784 0.5461 0.049 Uiso calc R 1 H C3 0.0912(3) 1.1038(3) 0.61381(17) 0.0463(8) Uani d . 1 C H3A 0.0240 1.0798 0.5705 0.056 Uiso calc R 1 H H3B 0.0852 1.1958 0.6226 0.056 Uiso calc R 1 H C4 0.0577(3) 1.0293(3) 0.68739(16) 0.0388(7) Uani d . 1 C H4 -0.0523 1.0231 0.6981 0.047 Uiso calc R 1 H C5 0.1448(3) 1.0907(2) 0.75517(14) 0.0305(6) Uani d . 1 C H5 0.1237 1.1830 0.7519 0.037 Uiso calc R 1 H C6 0.1009(3) 1.0505(3) 0.83779(15) 0.0347(6) Uani d . 1 C H6 -0.0105 1.0496 0.8445 0.042 Uiso calc R 1 H C7 0.1758(3) 1.1341(3) 0.89831(15) 0.0342(6) Uani d . 1 C H7A 0.1637 1.2247 0.8866 0.041 Uiso calc R 1 H H7B 0.1395 1.1163 0.9514 0.041 Uiso calc R 1 H C8 0.3354(3) 1.0892(2) 0.88572(14) 0.0274(5) Uani d . 1 C C9 0.4016(3) 1.1385(2) 0.80846(14) 0.0259(6) Uani d . 1 C C10 0.3158(3) 1.0759(2) 0.74168(13) 0.0264(6) Uani d . 1 C H10 0.3375 0.9837 0.7453 0.032 Uiso calc R 1 H C11 0.5652(3) 1.0994(2) 0.82115(14) 0.0290(6) Uani d . 1 C H11A 0.6339 1.1475 0.7871 0.035 Uiso calc R 1 H H11B 0.5795 1.0082 0.8118 0.035 Uiso calc R 1 H C12 0.5894(3) 1.1328(2) 0.90704(14) 0.0281(6) Uani d . 1 C H12 0.6168 1.2239 0.9103 0.034 Uiso calc R 1 H C13 0.7051(3) 1.0592(2) 0.94975(15) 0.0282(6) Uani d . 1 C C14 0.7142(3) 0.9268(3) 0.96273(16) 0.0364(7) Uani d . 1 C H14 0.6455 0.8648 0.9449 0.044 Uiso calc R 1 H C15 0.8382(3) 0.9064(3) 1.00485(16) 0.0411(7) Uani d . 1 C H15 0.8714 0.8260 1.0219 0.049 Uiso calc R 1 H C16 0.8253(3) 1.1086(3) 0.98565(15) 0.0337(6) Uani d . 1 C H16 0.8484 1.1959 0.9871 0.040 Uiso calc R 1 H C17 0.1253(3) 0.9038(3) 0.66522(18) 0.0439(7) Uani d . 1 C C18 0.3072(3) 0.9464(3) 0.87992(15) 0.0310(6) Uani d . 1 C C19 0.3937(3) 1.2831(2) 0.80351(16) 0.0361(7) Uani d . 1 C H19A 0.4248 1.3196 0.8532 0.054 Uiso calc R 1 H H19B 0.2906 1.3089 0.7919 0.054 Uiso calc R 1 H H19C 0.4608 1.3127 0.7623 0.054 Uiso calc R 1 H loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 O1 0.0483(12) 0.0438(13) 0.0420(11) 0.0002(10) -0.0039(10) -0.0142(10) O2 0.0620(15) 0.0424(14) 0.0797(17) -0.0163(12) -0.0030(14) -0.0111(12) O3 0.0428(11) 0.0298(10) 0.0520(13) 0.0011(10) -0.0017(10) 0.0107(10) O4 0.0326(10) 0.0351(10) 0.0435(11) -0.0047(9) 0.0013(9) 0.0062(9) O5 0.0321(10) 0.0373(11) 0.0228(9) 0.0035(8) 0.0021(8) -0.0030(8) O6 0.0387(12) 0.0426(12) 0.0427(12) 0.0006(9) -0.0113(10) -0.0011(9) C1 0.0441(16) 0.0377(16) 0.0274(14) -0.0019(13) -0.0010(13) 0.0018(13) C2 0.0507(18) 0.0451(17) 0.0275(15) 0.0001(14) -0.0050(14) 0.0001(14) C3 0.0493(17) 0.0514(19) 0.0381(16) 0.0070(15) -0.0138(15) -0.0038(15) C4 0.0305(15) 0.0437(18) 0.0422(17) 0.0024(13) -0.0079(14) -0.0048(14) C5 0.0309(14) 0.0295(14) 0.0311(14) 0.0028(11) -0.0020(11) -0.0026(12) C6 0.0258(13) 0.0416(16) 0.0368(16) 0.0047(12) 0.0036(13) 0.0033(13) C7 0.0328(14) 0.0412(16) 0.0286(15) 0.0061(13) 0.0057(12) 0.0013(13) C8 0.0285(12) 0.0289(13) 0.0248(12) 0.0015(11) 0.0011(11) -0.0005(12) C9 0.0329(14) 0.0216(13) 0.0232(13) -0.0004(12) 0.0017(11) -0.0009(11) C10 0.0298(14) 0.0258(13) 0.0236(13) 0.0007(11) 0.0027(11) 0.0001(11) C11 0.0316(14) 0.0300(14) 0.0255(13) -0.0040(11) 0.0055(11) -0.0009(11) C12 0.0299(14) 0.0250(13) 0.0294(14) -0.0030(11) 0.0000(12) -0.0027(11) C13 0.0301(14) 0.0292(14) 0.0252(13) -0.0004(11) 0.0011(12) -0.0058(11) C14 0.0394(16) 0.0321(15) 0.0376(16) 0.0006(13) -0.0048(13) -0.0010(13) C15 0.0471(17) 0.0333(16) 0.0427(17) 0.0050(14) -0.0030(15) 0.0015(13) C16 0.0379(15) 0.0305(15) 0.0326(15) 0.0021(13) 0.0002(13) -0.0021(12) C17 0.0368(16) 0.0460(19) 0.0488(18) -0.0078(14) -0.0101(15) -0.0092(16) C18 0.0315(14) 0.0347(15) 0.0269(14) -0.0012(12) 0.0059(12) 0.0064(12) C19 0.0480(17) 0.0268(15) 0.0336(15) -0.0006(13) -0.0040(14) 0.0018(12) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_publ_flag C17 O1 C2 108.4(2) ? C18 O4 C6 107.1(2) ? C8 O5 C12 108.60(17) ? C15 O6 C16 105.9(2) ? C2 C1 C10 110.2(2) ? O1 C2 C3 102.0(2) ? O1 C2 C1 108.8(2) ? C3 C2 C1 112.3(2) ? C2 C3 C4 98.8(2) y C17 C4 C3 99.8(2) y C17 C4 C5 111.3(2) ? C3 C4 C5 108.2(2) ? C6 C5 C4 117.1(2) ? C6 C5 C10 111.2(2) ? C4 C5 C10 109.7(2) ? O4 C6 C7 102.4(2) ? O4 C6 C5 109.3(2) ? C7 C6 C5 111.2(2) ? C8 C7 C6 97.4(2) y O5 C8 C7 118.0(2) ? O5 C8 C18 110.7(2) ? C7 C8 C18 99.5(2) ? O5 C8 C9 106.59(19) ? C7 C8 C9 112.0(2) ? C18 C8 C9 109.8(2) ? C11 C9 C10 117.7(2) ? C11 C9 C19 108.7(2) ? C10 C9 C19 111.6(2) ? C11 C9 C8 98.54(19) ? C10 C9 C8 108.02(19) ? C19 C9 C8 111.6(2) ? C9 C10 C1 116.6(2) ? C9 C10 C5 109.51(19) ? C1 C10 C5 111.3(2) ? C9 C11 C12 102.04(19) ? O5 C12 C13 109.8(2) ? O5 C12 C11 105.36(19) ? C13 C12 C11 116.9(2) ? C16 C13 C14 105.5(2) ? C16 C13 C12 125.1(2) ? C14 C13 C12 129.4(2) ? C15 C14 C13 106.9(3) ? C14 C15 O6 110.5(3) ? C13 C16 O6 111.1(2) ? O2 C17 O1 121.0(3) ? O2 C17 C4 130.4(3) ? O1 C17 C4 108.6(3) ? O3 C18 O4 122.0(2) ? O3 C18 C8 128.9(2) ? O4 C18 C8 109.0(2) ? loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance O1 C17 1.362(4) O1 C2 1.467(4) O2 C17 1.196(4) O3 C18 1.199(3) O4 C18 1.350(3) O4 C6 1.466(3) O5 C8 1.416(3) O5 C12 1.467(3) O6 C15 1.362(3) O6 C16 1.365(3) C1 C2 1.524(4) C1 C10 1.535(3) C2 C3 1.515(4) C3 C4 1.525(4) C4 C17 1.512(4) C4 C5 1.547(4) C5 C6 1.538(4) C5 C10 1.550(4) C6 C7 1.524(4) C7 C8 1.516(4) C8 C18 1.541(4) C8 C9 1.548(3) C9 C11 1.532(3) C9 C10 1.534(3) C9 C19 1.540(3) C11 C12 1.538(4) C12 C13 1.489(4) C13 C16 1.345(4) C13 C14 1.426(4) C14 C15 1.340(4) loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion _geom_torsion_publ_flag C17 O1 C2 C3 -28.6(3) ? C17 O1 C2 C1 90.2(3) ? C10 C1 C2 O1 -51.6(3) ? C10 C1 C2 C3 60.5(3) ? O1 C2 C3 C4 44.5(3) ? C1 C2 C3 C4 -71.8(3) y C2 C3 C4 C17 -43.4(3) ? C2 C3 C4 C5 73.0(3) ? C17 C4 C5 C6 -84.9(3) ? C3 C4 C5 C6 166.5(2) ? C17 C4 C5 C10 43.0(3) ? C3 C4 C5 C10 -65.6(3) ? C18 O4 C6 C7 -32.8(2) ? C18 O4 C6 C5 85.1(2) ? C4 C5 C6 O4 77.5(3) ? C10 C5 C6 O4 -49.7(3) ? C4 C5 C6 C7 -170.1(2) ? C10 C5 C6 C7 62.7(3) ? O4 C6 C7 C8 47.6(2) ? C5 C6 C7 C8 -69.0(2) ? C12 O5 C8 C7 -148.2(2) ? C12 O5 C8 C18 98.1(2) ? C12 O5 C8 C9 -21.3(2) ? C6 C7 C8 O5 -163.0(2) ? C6 C7 C8 C18 -43.4(2) ? C6 C7 C8 C9 72.7(2) y O5 C8 C9 C11 39.4(2) ? C7 C8 C9 C11 169.8(2) ? C18 C8 C9 C11 -80.6(2) ? O5 C8 C9 C10 162.28(19) ? C7 C8 C9 C10 -67.3(3) ? C18 C8 C9 C10 42.3(3) ? O5 C8 C9 C19 -74.7(3) ? C7 C8 C9 C19 55.7(3) ? C18 C8 C9 C19 165.3(2) ? C11 C9 C10 C1 -72.0(3) ? C19 C9 C10 C1 54.7(3) ? C8 C9 C10 C1 177.6(2) ? C11 C9 C10 C5 160.6(2) ? C19 C9 C10 C5 -72.7(3) ? C8 C9 C10 C5 50.3(3) ? C2 C1 C10 C9 -172.0(2) ? C2 C1 C10 C5 -45.5(3) ? C6 C5 C10 C9 -49.7(3) y C4 C5 C10 C9 179.2(2) ? C6 C5 C10 C1 -180.0(2) ? C4 C5 C10 C1 48.9(3) y C10 C9 C11 C12 -156.8(2) ? C19 C9 C11 C12 75.2(2) ? C8 C9 C11 C12 -41.2(2) ? C8 O5 C12 C13 -132.8(2) ? C8 O5 C12 C11 -6.1(2) ? C9 C11 C12 O5 30.8(2) ? C9 C11 C12 C13 153.1(2) ? O5 C12 C13 C16 -118.2(3) ? C11 C12 C13 C16 121.9(3) ? O5 C12 C13 C14 60.9(3) ? C11 C12 C13 C14 -59.0(4) ? C16 C13 C14 C15 -0.2(3) ? C12 C13 C14 C15 -179.5(3) ? C13 C14 C15 O6 -0.1(3) ? C16 O6 C15 C14 0.4(3) ? C14 C13 C16 O6 0.5(3) ? C12 C13 C16 O6 179.8(2) ? C15 O6 C16 C13 -0.5(3) ? C2 O1 C17 O2 -179.5(3) ? C2 O1 C17 C4 -0.1(3) ? C3 C4 C17 O2 -152.3(3) ? C5 C4 C17 O2 93.7(4) ? C3 C4 C17 O1 28.3(3) ? C5 C4 C17 O1 -85.7(3) ? C6 O4 C18 O3 -177.8(2) ? C6 O4 C18 C8 3.8(3) ? O5 C8 C18 O3 -26.8(4) ? C7 C8 C18 O3 -151.7(3) ? C9 C8 C18 O3 90.6(3) ? O5 C8 C18 O4 151.39(19) ? C7 C8 C18 O4 26.5(3) ? C9 C8 C18 O4 -91.2(2) ?