#------------------------------------------------------------------------------ #$Date: 2016-02-19 16:29:56 +0200 (Fri, 19 Feb 2016) $ #$Revision: 176759 $ #$URL: file:///home/coder/svn-repositories/cod/cif/2/00/86/2008640.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2008640 loop_ _publ_author_name 'Bolte, Michael' 'Benecke, Bernd' 'Egert, Ernst' _publ_section_title ; Bis-lactim ethers of cyclic dipeptides. 2. Benzyl-substituted compounds ; _journal_issue 6 _journal_name_full 'Acta Crystallographica Section C' _journal_page_first 968 _journal_page_last 973 _journal_paper_doi 10.1107/S010827019801645X _journal_volume 55 _journal_year 1999 _chemical_formula_sum 'C20 H17 F5 N2 O2' _chemical_formula_weight 412.36 _chemical_name_systematic ; (3R,6S)-3-Benzyl-6-pentafluorophenyl-methyl-2,5-dimethoxy- 3,6-dihydro-pyrazine ; _space_group_IT_number 1 _symmetry_cell_setting triclinic _symmetry_space_group_name_Hall 'P 1' _symmetry_space_group_name_H-M 'P 1' _audit_creation_method SHELXL _cell_angle_alpha 98.410(10) _cell_angle_beta 90.130(10) _cell_angle_gamma 91.970(10) _cell_formula_units_Z 1 _cell_length_a 5.8800(10) _cell_length_b 7.4490(10) _cell_length_c 11.1970(10) _cell_measurement_reflns_used 52 _cell_measurement_temperature 293 _cell_measurement_theta_max 40 _cell_measurement_theta_min 30 _cell_volume 484.86(11) _computing_cell_refinement D4 _computing_data_collection 'D4 (Clegg, 1981)' _computing_data_reduction 'REDU4 (Stoe & Cie, 1988)' _computing_molecular_graphics 'XP (Sheldrick, 1991)' _computing_structure_refinement 'SHELXL-97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS-86 (Sheldrick, 1985)' _diffrn_ambient_temperature 293 _diffrn_measurement_device 'Stoe Siemens four-circle diffractometer' _diffrn_measurement_method '\w-\q scans with learnt profile (Clegg, 1981)' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type CuK\a _diffrn_radiation_wavelength 1.54180 _diffrn_reflns_av_R_equivalents 0.0000 _diffrn_reflns_av_sigmaI/netI 0.0169 _diffrn_reflns_limit_h_max 1 _diffrn_reflns_limit_h_min -6 _diffrn_reflns_limit_k_max 9 _diffrn_reflns_limit_k_min -9 _diffrn_reflns_limit_l_max 13 _diffrn_reflns_limit_l_min -13 _diffrn_reflns_number 2150 _diffrn_reflns_theta_max 69.90 _diffrn_reflns_theta_min 3.99 _diffrn_standards_decay_% 5 _diffrn_standards_interval_time 120 _diffrn_standards_number 3 _exptl_absorpt_coefficient_mu 1.083 _exptl_absorpt_correction_type none _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.412 _exptl_crystal_description block _exptl_crystal_F_000 212 _exptl_crystal_size_max 0.5 _exptl_crystal_size_mid 0.3 _exptl_crystal_size_min 0.3 _refine_diff_density_max 0.124 _refine_diff_density_min -0.130 _refine_ls_abs_structure_details 'Flack (1983)' _refine_ls_abs_structure_Flack -0.06(18) _refine_ls_extinction_coef 0.021(2) _refine_ls_extinction_method 'SHELXL97 (Sheldrick, 1997)' _refine_ls_goodness_of_fit_all 1.050 _refine_ls_goodness_of_fit_obs 1.056 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 263 _refine_ls_number_reflns 2150 _refine_ls_number_restraints 3 _refine_ls_restrained_S_all 1.049 _refine_ls_restrained_S_obs 1.055 _refine_ls_R_factor_all 0.0386 _refine_ls_R_factor_obs .0371 _refine_ls_shift/esd_max 0.000 _refine_ls_shift/esd_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'w = 1/[\s^2^(Fo^2^)+(0.0755P)^2^+0.0428P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_all 0.1137 _refine_ls_wR_factor_obs .1107 _reflns_number_observed 2028 _reflns_number_total 2150 _reflns_observed_criterion I>2\s(I) _cod_data_source_file sk1255.cif _cod_data_source_block III _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Triclinic' changed to 'triclinic' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_enum 1527 2010-12-29 10:47:43Z saulius The following automatic conversions were performed: '_refine_ls_weighting_scheme' value 'calc w = 1/[\s^2^(Fo^2^)+(0.0755P)^2^+0.0428P] where P=(Fo^2^+2Fc^2^)/3' was changed to 'calc'. New tag '_refine_ls_weighting_details' was created. The value of the new tag was set to 'w = 1/[\s^2^(Fo^2^)+(0.0755P)^2^+0.0428P] where P=(Fo^2^+2Fc^2^)/3'. Automatic conversion script Id: cif_fix_values 3143 2015-03-26 13:38:13Z robertas ; _cod_database_code 2008640 _cod_database_fobs_code 2008640 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 N1 .0395(11) .0661(12) .0514(10) .0001(10) -.0026(9) .0069(9) C2 .0481(16) .0615(13) .0483(11) .0056(12) -.0025(11) .0076(10) C3 .0358(12) .0727(15) .0541(13) .0068(11) -.0004(10) .0106(11) N4 .0401(12) .0729(13) .0553(11) -.0008(10) -.0042(9) .0121(9) C5 .0422(14) .0637(14) .0509(12) -.0009(12) -.0047(11) .0128(10) C6 .0378(13) .0601(13) .0586(13) .0035(11) -.0057(10) .0069(10) O21 .0545(11) .0652(11) .0722(11) .0049(9) .0058(9) .0015(8) C22 .0658(19) .0666(16) .095(2) -.0054(15) -.0010(17) -.0033(15) O51 .0569(12) .0610(10) .0761(11) -.0036(9) -.0015(10) .0107(8) C52 .066(2) .0719(18) .095(2) -.0163(16) -.0044(17) .0151(16) C1' .0393(14) .0883(18) .0654(15) .0108(13) .0107(12) .0085(13) C2' .0545(16) .100(2) .0478(12) .0127(15) .0125(12) .0082(12) C3' .063(2) .151(3) .0514(14) .008(2) -.0012(15) .0133(18) C4' .079(3) .245(7) .0540(18) .047(4) -.0056(18) .023(3) C5' .154(6) .222(7) .063(2) .106(6) .017(3) .038(3) C6' .186(7) .120(3) .081(3) .063(4) .028(4) .029(2) C7' .102(3) .100(3) .073(2) .015(2) .015(2) .0138(18) C1" .0384(12) .0707(15) .0624(14) .0045(11) .0047(11) .0009(11) C2" .0453(14) .0688(14) .0481(11) .0042(12) .0077(11) -.0020(10) C3" .0502(16) .0884(18) .0477(12) .0024(14) .0039(12) .0030(12) F3" .0648(11) .1154(14) .0692(9) -.0266(10) -.0103(8) .0086(9) C4" .066(2) .141(3) .0487(14) .032(2) .0023(14) -.0012(16) F4" .0730(14) .225(3) .0711(12) .0345(16) -.0209(10) .0049(14) C5" .125(4) .106(3) .0635(18) .051(3) .012(2) .0181(18) F5" .218(4) .173(3) .1001(16) .111(3) .002(2) .0449(16) C6" .135(4) .0707(18) .079(2) .021(2) .028(2) .0108(16) F6" .238(4) .0739(11) .1249(19) .0083(17) .041(2) .0249(11) C7" .078(2) .0711(16) .0596(15) -.0034(16) .0142(15) -.0005(12) F7" .0904(14) .0945(12) .0947(13) -.0340(11) .0128(11) -.0053(9) loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_thermal_displace_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_disorder_group _atom_site_type_symbol N1 .7106(4) .5315(3) .50372(17) .0525(5) Uani d . 1 . N C2 .5332(5) .5992(3) .5506(2) .0526(6) Uani d . 1 . C C3 .2997(4) .5102(3) .5568(2) .0540(6) Uani d . 1 . C H3 .1930 .5787 .5153 .065 Uiso calc R 1 . H N4 .2868(4) .3223(3) .49740(18) .0559(5) Uani d . 1 . N C5 .4661(4) .2534(3) .4525(2) .0519(6) Uani d . 1 . C C6 .6953(4) .3449(3) .4447(2) .0523(6) Uani d . 1 . C H6 .8036 .2772 .4858 .063 Uiso calc R 1 . H O21 .5338(4) .7739(2) .60525(18) .0647(5) Uani d . 1 . O C22 .7447(6) .8754(4) .6034(3) .0773(9) Uani d . 1 . C H22A .7269 .9966 .6443 .116 Uiso calc R 1 . H H22B .7882 .8799 .5213 .116 Uiso calc R 1 . H H22C .8603 .8178 .6433 .116 Uiso calc R 1 . H O51 .4701(3) .0767(2) .40463(18) .0648(5) Uani d . 1 . O C52 .2596(6) -.0259(4) .4031(3) .0776(9) Uani d . 1 . C H52A .2825 -.1490 .3673 .116 Uiso calc R 1 . H H52B .1488 .0265 .3568 .116 Uiso calc R 1 . H H52C .2064 -.0240 .4842 .116 Uiso calc R 1 . H C1' .2185(5) .5162(4) .6884(3) .0644(7) Uani d . 1 . C H1'A .2223 .6415 .7273 .077 Uiso calc R 1 . H H1'B .0618 .4708 .6876 .077 Uiso calc R 1 . H C2' .3594(6) .4072(5) .7612(2) .0675(8) Uani d . 1 . C C3' .5633(6) .4795(6) .8125(3) .0885(11) Uani d . 1 . C H3' .6122 .5962 .8020 .106 Uiso calc R 1 . H C4' .6952(9) .3783(11) .8794(3) .125(2) Uani d . 1 . C H4' .8329 .4275 .9123 .150 Uiso calc R 1 . H C5' .6264(14) .2107(12) .8973(4) .142(3) Uani d . 1 . C H5' .7153 .1453 .9432 .171 Uiso calc R 1 . H C6' .4213(14) .1343(8) .8469(4) .126(2) Uani d . 1 . C H6' .3731 .0181 .8589 .151 Uiso calc R 1 . H C7' .2902(8) .2339(5) .7788(3) .0913(12) Uani d . 1 . C H7' .1541 .1834 .7446 .110 Uiso calc R 1 . H C1" .7754(5) .3362(4) .3127(2) .0580(6) Uani d . 1 . C H1"A .9352 .3732 .3127 .070 Uiso calc R 1 . H H1"B .7609 .2115 .2732 .070 Uiso calc R 1 . H C2" .6439(5) .4543(4) .2410(2) .0551(6) Uani d . 1 . C C3" .4402(5) .3984(4) .1847(2) .0628(7) Uani d . 1 . C F3" .3520(3) .2318(3) .19175(16) .0844(6) Uani d . 1 . F C4" .3215(7) .5050(6) .1180(3) .0862(11) Uani d . 1 . C F4" .1229(4) .4429(5) .06592(19) .1240(10) Uani d . 1 . F C5" .4072(10) .6730(6) .1039(3) .0965(14) Uani d . 1 . C F5" .2938(8) .7762(5) .0375(3) .1587(16) Uani d . 1 . F C6" .6115(10) .7331(5) .1565(4) .0944(13) Uani d . 1 . C F6" .7024(8) .8963(3) .1412(3) .1446(14) Uani d . 1 . F C7" .7257(6) .6257(4) .2248(3) .0706(8) Uani d . 1 . C F7" .9253(4) .6883(3) .27474(19) .0959(7) Uani d . 1 . F loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0181 0.0091 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0311 0.0180 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0492 0.0322 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' F F 0.0727 0.0534 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_publ_flag C2 N1 C6 117.8(2) yes N1 C2 O21 121.0(2) yes N1 C2 C3 128.5(2) yes O21 C2 C3 110.5(2) yes N4 C3 C2 113.1(2) yes N4 C3 C1' 108.7(2) yes C2 C3 C1' 111.8(2) ? C5 N4 C3 118.3(2) yes N4 C5 O51 121.3(2) yes N4 C5 C6 127.9(2) yes O51 C5 C6 110.9(2) yes N1 C6 C5 114.3(2) yes N1 C6 C1" 109.3(2) yes C5 C6 C1" 111.9(2) ? C2 O21 C22 116.1(2) ? C5 O51 C52 116.7(2) ? C2' C1' C3 113.5(2) ? C7' C2' C3' 118.6(4) ? C7' C2' C1' 121.3(3) ? C3' C2' C1' 120.1(3) ? C2' C3' C4' 120.3(5) ? C5' C4' C3' 120.9(6) ? C4' C5' C6' 120.1(5) ? C7' C6' C5' 119.2(6) ? C2' C7' C6' 120.9(5) ? C2" C1" C6 113.6(2) ? C3" C2" C7" 115.7(3) ? C3" C2" C1" 122.7(3) ? C7" C2" C1" 121.5(3) ? F3" C3" C4" 117.2(3) ? F3" C3" C2" 119.9(3) ? C4" C3" C2" 122.8(3) ? F4" C4" C5" 120.2(4) ? F4" C4" C3" 119.9(4) ? C5" C4" C3" 119.8(4) ? F5" C5" C4" 120.1(5) ? F5" C5" C6" 120.6(5) ? C4" C5" C6" 119.4(3) ? F6" C6" C5" 120.5(4) ? F6" C6" C7" 119.6(5) ? C5" C6" C7" 119.9(4) ? F7" C7" C6" 118.4(3) ? F7" C7" C2" 119.3(3) ? C6" C7" C2" 122.3(4) ? loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag N1 C2 . 1.257(3) yes N1 C6 . 1.449(3) yes C2 O21 . 1.355(3) yes C2 C3 . 1.510(4) ? C3 N4 . 1.458(3) yes C3 C1' . 1.545(4) ? N4 C5 . 1.261(3) yes C5 O51 . 1.348(3) yes C5 C6 . 1.498(3) ? C6 C1" . 1.545(4) ? O21 C22 . 1.432(4) yes O51 C52 . 1.431(4) yes C1' C2' . 1.500(4) ? C2' C7' . 1.381(5) ? C2' C3' . 1.385(5) ? C3' C4' . 1.391(7) ? C4' C5' . 1.342(10) ? C5' C6' . 1.397(10) ? C6' C7' . 1.389(7) ? C1" C2" . 1.506(4) ? C2" C3" . 1.375(4) ? C2" C7" . 1.385(4) ? C3" F3" . 1.342(4) ? C3" C4" . 1.373(5) ? C4" F4" . 1.341(5) ? C4" C5" . 1.364(7) ? C5" F5" . 1.337(5) ? C5" C6" . 1.369(7) ? C6" F6" . 1.345(5) ? C6" C7" . 1.375(6) ? C7" F7" . 1.338(4) ? loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion C6 N1 C2 O21 -178.7(2) C6 N1 C2 C3 1.4(3) N1 C2 C3 N4 -1.1(4) O21 C2 C3 N4 178.91(18) N1 C2 C3 C1' 122.0(3) O21 C2 C3 C1' -57.9(3) C2 C3 N4 C5 2.5(3) C1' C3 N4 C5 -122.4(2) C3 N4 C5 O51 174.8(2) C3 N4 C5 C6 -4.4(3) C2 N1 C6 C5 -2.5(3) C2 N1 C6 C1" 123.8(2) N4 C5 C6 N1 4.4(3) O51 C5 C6 N1 -174.89(19) N4 C5 C6 C1" -120.5(3) O51 C5 C6 C1" 60.2(3) N1 C2 O21 C22 1.4(4) C3 C2 O21 C22 -178.7(2) N4 C5 O51 C52 2.4(4) C6 C5 O51 C52 -178.2(2) N4 C3 C1' C2' 60.4(3) C2 C3 C1' C2' -65.2(3) C3 C1' C2' C7' -98.3(3) C3 C1' C2' C3' 81.6(3) C7' C2' C3' C4' 0.4(5) C1' C2' C3' C4' -179.6(3) C2' C3' C4' C5' -1.0(6) C3' C4' C5' C6' 0.9(8) C4' C5' C6' C7' -0.2(7) C3' C2' C7' C6' 0.3(5) C1' C2' C7' C6' -179.7(3) C5' C6' C7' C2' -0.5(6) N1 C6 C1" C2" -57.1(3) C5 C6 C1" C2" 70.6(3) C6 C1" C2" C3" -84.4(3) C6 C1" C2" C7" 97.6(3) C7" C2" C3" F3" 177.6(2) C1" C2" C3" F3" -0.5(4) C7" C2" C3" C4" -1.0(4) C1" C2" C3" C4" -179.1(2) F3" C3" C4" F4" 1.8(4) C2" C3" C4" F4" -179.6(3) F3" C3" C4" C5" -177.5(3) C2" C3" C4" C5" 1.1(4) F4" C4" C5" F5" -0.3(5) C3" C4" C5" F5" 179.0(3) F4" C4" C5" C6" -179.2(3) C3" C4" C5" C6" 0.1(5) F5" C5" C6" F6" -0.6(6) C4" C5" C6" F6" 178.3(3) F5" C5" C6" C7" 179.8(3) C4" C5" C6" C7" -1.3(5) F6" C6" C7" F7" 0.3(5) C5" C6" C7" F7" 179.8(3) F6" C6" C7" C2" -178.2(3) C5" C6" C7" C2" 1.4(5) C3" C2" C7" F7" -178.7(2) C1" C2" C7" F7" -0.5(4) C3" C2" C7" C6" -0.2(4) C1" C2" C7" C6" 177.9(3)