#------------------------------------------------------------------------------ #$Date: 2011-09-10 06:16:28 +0300 (Sat, 10 Sep 2011) $ #$Revision: 25271 $ #$URL: file:///home/coder/svn-repositories/cod/cif/2/2012892.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2012892 loop_ _publ_author_name 'Freire, Eleonora' 'Baggio, Sergio' 'Mu\~noz, Juan Carlos' 'Baggio, Ricardo' _publ_section_title ; Bis(1,10-phenanthroline)(thiosulfato)manganese(II) methanol solvate and catena-poly[[diaqua(2,9-dimethyl-1,10-phenanthroline)manganese(II)]-\m-thiosulfato] ; _journal_issue 8 _journal_name_full 'Acta Crystallographica Section C' _journal_page_first m455 _journal_page_last m458 _journal_volume 58 _journal_year 2002 _chemical_formula_iupac '[Mn (S2 O3) (C12 H8 N2)2 ], C H4 O1' _chemical_formula_moiety 'Mn C24 H16 O3 N4 S2, C H4 O' _chemical_formula_sum 'C25 H20 Mn N4 O4 S2' _chemical_formula_weight 559.51 _chemical_name_systematic ; bis(1,10-phenanthroline-\k^2^N,N')(thiosulfato-\k^2^O:S)manganese(II) methanol solvate ; _space_group_IT_number 14 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-P 2yn' _symmetry_space_group_name_H-M 'P 1 21/n 1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 90.00 _cell_angle_beta 109.180(10) _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 12.9240(10) _cell_length_b 11.4120(10) _cell_length_c 17.0840(10) _cell_measurement_reflns_used 84 _cell_measurement_temperature 293(2) _cell_measurement_theta_max 28.01 _cell_measurement_theta_min 1.73 _cell_volume 2379.8(3) _computing_cell_refinement SMART-NT _computing_data_collection 'SMART-NT (Bruker, 2001)' _computing_data_reduction 'SAINT-NT (Bruker, 2000)' _computing_molecular_graphics 'XP in SHELXTL-PC (Sheldrick, 1994)' _computing_publication_material SHELXL97 _computing_structure_refinement 'SHELXL97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS97 (Sheldrick, 1997)' _diffrn_ambient_temperature 293(2) _diffrn_measured_fraction_theta_full 0.984 _diffrn_measured_fraction_theta_max 0.922 _diffrn_measurement_device_type 'Bruker CCD area-detector' _diffrn_measurement_method '\f and \w' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.030 _diffrn_reflns_av_sigmaI/netI 0.039 _diffrn_reflns_limit_h_max 16 _diffrn_reflns_limit_h_min -8 _diffrn_reflns_limit_k_max 14 _diffrn_reflns_limit_k_min -14 _diffrn_reflns_limit_l_max 20 _diffrn_reflns_limit_l_min -22 _diffrn_reflns_number 11546 _diffrn_reflns_theta_full 27.00 _diffrn_reflns_theta_max 28.01 _diffrn_reflns_theta_min 1.73 _exptl_absorpt_coefficient_mu 0.772 _exptl_absorpt_correction_T_max 0.91 _exptl_absorpt_correction_T_min 0.88 _exptl_absorpt_correction_type refdelf _exptl_absorpt_process_details '(SADABS in SAINT-NT; Bruker, 2000)' _exptl_crystal_colour yellow _exptl_crystal_density_diffrn 1.562 _exptl_crystal_density_method 'not measured' _exptl_crystal_description Blocks _exptl_crystal_F_000 1148 _exptl_crystal_size_max 0.18 _exptl_crystal_size_mid 0.14 _exptl_crystal_size_min 0.12 _refine_diff_density_max 0.675 _refine_diff_density_min -0.281 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.001 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 330 _refine_ls_number_reflns 5302 _refine_ls_number_restraints 1 _refine_ls_restrained_S_all 1.004 _refine_ls_R_factor_all 0.058 _refine_ls_R_factor_gt 0.044 _refine_ls_shift/su_max 0.011 _refine_ls_shift/su_mean 0.005 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w = 1/[\s^2^(Fo^2^)+(0.0728P)^2^] where P = (Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.119 _refine_ls_wR_factor_ref 0.125 _reflns_number_gt 3942 _reflns_number_total 5302 _reflns_threshold_expression I>2\s(I) _[local]_cod_data_source_file ob1070.cif _[local]_cod_data_source_block I _[local]_cod_cif_authors_sg_H-M 'P 21/n' _cod_depositor_comments ; The following automatic conversions were performed: '_geom_bond_publ_flag' value 'Y' changed to 'y' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29 (10 times). '_geom_angle_publ_flag' value 'Y' changed to 'y' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29 (21 time). Automatic conversion script Id: cif_fix_values 1715 2011-07-08 13:25:40Z adriana ; _cod_original_cell_volume 2379.9(3) _cod_database_code 2012892 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x+1/2, y+1/2, -z+1/2' '-x, -y, -z' 'x-1/2, -y-1/2, z-1/2' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_type_symbol Mn 0.90273(3) 0.82197(3) 0.13372(2) 0.04316(14) Uani d . 1 Mn S1 0.86129(5) 1.07293(6) 0.09745(4) 0.04631(18) Uani d . 1 S S2 0.87452(6) 1.01075(7) 0.21088(4) 0.0564(2) Uani d . 1 S O1 0.90030(15) 0.97408(16) 0.05753(10) 0.0523(4) Uani d . 1 O O2 0.74816(15) 1.0993(2) 0.05129(11) 0.0676(6) Uani d . 1 O O3 0.93141(18) 1.17420(17) 0.10435(15) 0.0733(6) Uani d . 1 O N1A 1.08332(16) 0.79457(18) 0.16145(12) 0.0420(5) Uani d . 1 N N2A 0.95801(16) 0.70514(18) 0.24681(12) 0.0433(5) Uani d . 1 N C1A 1.1435(2) 0.8346(2) 0.11749(16) 0.0513(6) Uani d . 1 C H1A 1.1099 0.8810 0.0713 0.062 Uiso calc R 1 H C2A 1.2546(2) 0.8102(2) 0.13759(18) 0.0567(7) Uani d . 1 C H2A 1.2934 0.8365 0.1038 0.068 Uiso calc R 1 H C3A 1.3057(2) 0.7473(2) 0.20715(18) 0.0548(7) Uani d . 1 C H3A 1.3804 0.7320 0.2221 0.066 Uiso calc R 1 H C4A 1.2458(2) 0.7059(2) 0.25610(15) 0.0436(6) Uani d . 1 C C5A 1.2943(2) 0.6408(2) 0.33134(16) 0.0516(6) Uani d . 1 C H5A 1.3692 0.6258 0.3495 0.062 Uiso calc R 1 H C6A 1.2330(2) 0.6013(2) 0.37586(16) 0.0506(6) Uani d . 1 C H6A 1.2664 0.5612 0.4251 0.061 Uiso calc R 1 H C7A 1.1170(2) 0.6202(2) 0.34879(14) 0.0444(6) Uani d . 1 C C8A 1.0489(2) 0.5779(2) 0.39244(16) 0.0536(7) Uani d . 1 C H8A 1.0787 0.5353 0.4411 0.064 Uiso calc R 1 H C9A 0.9402(2) 0.5999(3) 0.36308(17) 0.0567(7) Uani d . 1 C H9A 0.8945 0.5728 0.3914 0.068 Uiso calc R 1 H C10A 0.8975(2) 0.6633(2) 0.29032(17) 0.0516(6) Uani d . 1 C H10A 0.8224 0.6774 0.2708 0.062 Uiso calc R 1 H C11A 1.06693(19) 0.68349(19) 0.27575(14) 0.0384(5) Uani d . 1 C C12A 1.13361(18) 0.7289(2) 0.22955(14) 0.0383(5) Uani d . 1 C N1B 0.86862(17) 0.69382(18) 0.02409(13) 0.0449(5) Uani d . 1 N N2B 0.72489(17) 0.7690(2) 0.09821(13) 0.0494(5) Uani d . 1 N C1B 0.9376(2) 0.6589(2) -0.01391(17) 0.0552(7) Uani d . 1 C H1B 1.0105 0.6822 0.0079 0.066 Uiso calc R 1 H C2B 0.9068(3) 0.5891(3) -0.08495(18) 0.0658(8) Uani d . 1 C H2B 0.9581 0.5667 -0.1095 0.079 Uiso calc R 1 H C3B 0.8010(3) 0.5544(2) -0.11757(18) 0.0645(8) Uani d . 1 C H3B 0.7791 0.5083 -0.1651 0.077 Uiso calc R 1 H C4B 0.7246(2) 0.5881(2) -0.07961(16) 0.0537(7) Uani d . 1 C C5B 0.6121(3) 0.5572(3) -0.11106(19) 0.0676(9) Uani d . 1 C H5B 0.5870 0.5109 -0.1584 0.081 Uiso calc R 1 H C6B 0.5417(3) 0.5933(3) -0.0741(2) 0.0689(9) Uani d . 1 C H6B 0.4685 0.5714 -0.0960 0.083 Uiso calc R 1 H C7B 0.5760(2) 0.6645(2) -0.00190(18) 0.0569(7) Uani d . 1 C C8B 0.5046(2) 0.7068(3) 0.0396(2) 0.0725(9) Uani d . 1 C H8B 0.4306 0.6871 0.0202 0.087 Uiso calc R 1 H C9B 0.5445(3) 0.7763(3) 0.1079(2) 0.0718(9) Uani d . 1 C H9B 0.4984 0.8033 0.1359 0.086 Uiso calc R 1 H C10B 0.6552(2) 0.8064(3) 0.1352(2) 0.0622(8) Uani d . 1 C H10B 0.6815 0.8548 0.1813 0.075 Uiso calc R 1 H C11B 0.6865(2) 0.6980(2) 0.03062(16) 0.0471(6) Uani d . 1 C C12B 0.7623(2) 0.6587(2) -0.00875(15) 0.0453(6) Uani d . 1 C O1XA 0.8929(4) 0.3714(5) 0.1854(3) 0.1215(14) Uani d PD 0.626(4) O O1XB 0.7836(7) 0.3782(7) 0.0638(5) 0.1215(14) Uani d PD 0.374(4) O C1X 0.8014(4) 0.4158(4) 0.1372(3) 0.1102(15) Uani d D 1 C loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 Mn 0.0339(2) 0.0469(2) 0.0438(2) 0.00108(15) 0.00624(16) 0.00107(15) S1 0.0400(3) 0.0491(4) 0.0510(4) 0.0026(3) 0.0164(3) 0.0035(3) S2 0.0628(5) 0.0637(5) 0.0397(3) 0.0081(3) 0.0129(3) -0.0019(3) O1 0.0604(12) 0.0537(11) 0.0464(9) 0.0063(9) 0.0225(8) 0.0015(8) O2 0.0458(11) 0.0973(16) 0.0582(12) 0.0188(10) 0.0149(9) 0.0200(11) O3 0.0721(15) 0.0560(13) 0.1058(17) -0.0140(10) 0.0484(13) -0.0086(11) N1A 0.0358(11) 0.0481(12) 0.0396(10) -0.0029(9) 0.0090(9) 0.0020(9) N2A 0.0358(11) 0.0474(12) 0.0439(11) -0.0021(9) 0.0094(9) -0.0002(9) C1A 0.0474(16) 0.0571(17) 0.0480(14) -0.0042(12) 0.0136(12) 0.0079(12) C2A 0.0474(16) 0.0629(18) 0.0656(18) -0.0067(13) 0.0266(14) 0.0020(14) C3A 0.0373(14) 0.0576(17) 0.0697(18) -0.0002(12) 0.0180(13) -0.0044(14) C4A 0.0357(13) 0.0444(14) 0.0474(13) -0.0006(10) 0.0092(11) -0.0070(11) C5A 0.0380(14) 0.0510(15) 0.0561(16) 0.0067(12) 0.0023(12) -0.0039(12) C6A 0.0508(16) 0.0478(15) 0.0435(14) 0.0071(12) 0.0022(12) -0.0008(11) C7A 0.0479(15) 0.0418(14) 0.0394(12) 0.0003(11) 0.0086(11) -0.0033(10) C8A 0.0696(19) 0.0489(15) 0.0416(14) -0.0026(13) 0.0174(13) 0.0048(11) C9A 0.0597(18) 0.0613(18) 0.0547(16) -0.0099(14) 0.0262(14) 0.0030(13) C10A 0.0424(15) 0.0580(17) 0.0561(16) -0.0045(12) 0.0184(12) 0.0000(12) C11A 0.0375(13) 0.0380(13) 0.0375(12) -0.0013(9) 0.0090(10) -0.0048(9) C12A 0.0347(12) 0.0382(12) 0.0394(12) -0.0023(9) 0.0086(10) -0.0047(10) N1B 0.0388(12) 0.0439(12) 0.0478(12) 0.0018(9) 0.0085(9) 0.0018(9) N2B 0.0377(12) 0.0533(13) 0.0532(12) 0.0013(10) 0.0094(10) 0.0012(10) C1B 0.0520(17) 0.0553(17) 0.0567(16) 0.0039(13) 0.0157(13) -0.0006(13) C2B 0.080(2) 0.0586(18) 0.0627(18) 0.0092(16) 0.0288(17) -0.0033(14) C3B 0.083(2) 0.0475(17) 0.0542(16) -0.0024(15) 0.0105(16) -0.0096(13) C4B 0.0611(18) 0.0413(14) 0.0483(15) -0.0041(12) 0.0037(13) 0.0034(11) C5B 0.069(2) 0.0545(19) 0.0612(18) -0.0173(15) -0.0035(16) -0.0032(14) C6B 0.0495(18) 0.0609(19) 0.078(2) -0.0188(14) -0.0043(15) 0.0093(16) C7B 0.0400(15) 0.0541(17) 0.0658(18) -0.0071(12) 0.0027(13) 0.0155(13) C8B 0.0391(16) 0.075(2) 0.096(3) -0.0085(15) 0.0129(17) 0.0207(19) C9B 0.0466(18) 0.083(2) 0.092(2) 0.0050(16) 0.0314(17) 0.0107(19) C10B 0.0474(17) 0.069(2) 0.0709(19) 0.0040(13) 0.0203(15) 0.0001(15) C11B 0.0407(14) 0.0425(14) 0.0508(14) -0.0025(11) 0.0052(11) 0.0122(11) C12B 0.0457(15) 0.0386(14) 0.0447(13) 0.0003(10) 0.0056(11) 0.0069(10) O1XA 0.156(4) 0.093(3) 0.113(3) 0.017(3) 0.041(3) -0.018(3) O1XB 0.156(4) 0.093(3) 0.113(3) 0.017(3) 0.041(3) -0.018(3) C1X 0.130(4) 0.101(3) 0.095(3) 0.049(3) 0.029(3) 0.013(3) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' S S 0.1246 0.1234 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Mn Mn 0.3368 0.7283 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_publ_flag O1 Mn N1A 92.71(7) y O1 Mn N2B 103.93(8) y N1A Mn N2B 156.20(8) y O1 Mn N2A 157.67(7) y N1A Mn N2A 73.92(7) y N2B Mn N2A 94.57(8) y O1 Mn N1B 93.40(7) y N1A Mn N1B 89.49(7) y N2B Mn N1B 72.88(8) y N2A Mn N1B 104.06(8) y O1 Mn S2 70.44(5) y N1A Mn S2 108.42(5) y N2B Mn S2 93.31(6) y N2A Mn S2 96.45(5) y N1B Mn S2 155.95(5) y O2 S1 O3 111.79(14) y O2 S1 O1 109.98(12) y O3 S1 O1 110.15(12) y O2 S1 S2 110.39(8) y O3 S1 S2 110.43(10) y O1 S1 S2 103.82(8) y S1 S2 Mn 77.72(3) ? S1 O1 Mn 105.81(9) ? C1A N1A C12A 118.1(2) ? C1A N1A Mn 126.44(17) ? C12A N1A Mn 115.45(14) ? C10A N2A C11A 117.5(2) ? C10A N2A Mn 127.54(17) ? C11A N2A Mn 114.75(15) ? N1A C1A C2A 122.7(2) ? N1A C1A H1A 118.6 ? C2A C1A H1A 118.6 ? C3A C2A C1A 119.2(2) ? C3A C2A H2A 120.4 ? C1A C2A H2A 120.4 ? C2A C3A C4A 119.8(2) ? C2A C3A H3A 120.1 ? C4A C3A H3A 120.1 ? C12A C4A C3A 117.6(2) ? C12A C4A C5A 119.3(2) ? C3A C4A C5A 123.1(2) ? C6A C5A C4A 120.9(2) ? C6A C5A H5A 119.5 ? C4A C5A H5A 119.5 ? C5A C6A C7A 121.1(2) ? C5A C6A H6A 119.5 ? C7A C6A H6A 119.5 ? C11A C7A C8A 117.4(2) ? C11A C7A C6A 119.5(2) ? C8A C7A C6A 123.1(2) ? C9A C8A C7A 119.5(2) ? C9A C8A H8A 120.2 ? C7A C8A H8A 120.2 ? C8A C9A C10A 119.3(2) ? C8A C9A H9A 120.4 ? C10A C9A H9A 120.4 ? N2A C10A C9A 123.6(3) ? N2A C10A H10A 118.2 ? C9A C10A H10A 118.2 ? N2A C11A C7A 122.7(2) ? N2A C11A C12A 118.1(2) ? C7A C11A C12A 119.2(2) ? N1A C12A C4A 122.5(2) ? N1A C12A C11A 117.6(2) ? C4A C12A C11A 119.9(2) ? C1B N1B C12B 117.4(2) ? C1B N1B Mn 127.57(18) ? C12B N1B Mn 114.79(16) ? C10B N2B C11B 118.6(2) ? C10B N2B Mn 125.12(19) ? C11B N2B Mn 116.20(16) ? N1B C1B C2B 123.5(3) ? N1B C1B H1B 118.3 ? C2B C1B H1B 118.3 ? C3B C2B C1B 119.1(3) ? C3B C2B H2B 120.5 ? C1B C2B H2B 120.5 ? C2B C3B C4B 119.9(3) ? C2B C3B H3B 120.1 ? C4B C3B H3B 120.1 ? C3B C4B C12B 117.4(3) ? C3B C4B C5B 123.1(3) ? C12B C4B C5B 119.4(3) ? C6B C5B C4B 121.2(3) ? C6B C5B H5B 119.4 ? C4B C5B H5B 119.4 ? C5B C6B C7B 121.4(3) ? C5B C6B H6B 119.3 ? C7B C6B H6B 119.3 ? C11B C7B C8B 116.9(3) ? C11B C7B C6B 119.1(3) ? C8B C7B C6B 124.0(3) ? C9B C8B C7B 120.0(3) ? C9B C8B H8B 120.0 ? C7B C8B H8B 120.0 ? C8B C9B C10B 119.1(3) ? C8B C9B H9B 120.4 ? C10B C9B H9B 120.4 ? N2B C10B C9B 122.9(3) ? N2B C10B H10B 118.5 ? C9B C10B H10B 118.5 ? N2B C11B C7B 122.4(3) ? N2B C11B C12B 118.0(2) ? C7B C11B C12B 119.5(3) ? N1B C12B C4B 122.8(3) ? N1B C12B C11B 117.9(2) ? C4B C12B C11B 119.3(2) ? O1XB C1X O1XA 108.9(5) ? loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_publ_flag Mn O1 2.1637(18) y Mn N1A 2.246(2) y Mn N2B 2.258(2) y Mn N2A 2.261(2) y Mn N1B 2.302(2) y Mn S2 2.6131(8) y S1 O2 1.4466(18) y S1 O3 1.449(2) y S1 O1 1.4893(18) y S1 S2 2.0175(9) y N1A C1A 1.327(3) ? N1A C12A 1.356(3) ? N2A C10A 1.332(3) ? N2A C11A 1.353(3) ? C1A C2A 1.391(4) ? C1A H1A 0.9300 ? C2A C3A 1.359(4) ? C2A H2A 0.9300 ? C3A C4A 1.395(4) ? C3A H3A 0.9300 ? C4A C12A 1.395(3) ? C4A C5A 1.438(4) ? C5A C6A 1.344(4) ? C5A H5A 0.9300 ? C6A C7A 1.432(3) ? C6A H6A 0.9300 ? C7A C11A 1.403(3) ? C7A C8A 1.412(4) ? C8A C9A 1.351(4) ? C8A H8A 0.9300 ? C9A C10A 1.387(4) ? C9A H9A 0.9300 ? C10A H10A 0.9300 ? C11A C12A 1.443(3) ? N1B C1B 1.325(3) ? N1B C12B 1.363(3) ? N2B C10B 1.329(3) ? N2B C11B 1.364(3) ? C1B C2B 1.396(4) ? C1B H1B 0.9300 ? C2B C3B 1.355(4) ? C2B H2B 0.9300 ? C3B C4B 1.401(4) ? C3B H3B 0.9300 ? C4B C12B 1.401(4) ? C4B C5B 1.420(4) ? C5B C6B 1.332(4) ? C5B H5B 0.9300 ? C6B C7B 1.420(4) ? C6B H6B 0.9300 ? C7B C11B 1.405(4) ? C7B C8B 1.421(4) ? C8B C9B 1.364(5) ? C8B H8B 0.9300 ? C9B C10B 1.395(4) ? C9B H9B 0.9300 ? C10B H10B 0.9300 ? C11B C12B 1.430(4) ? O1XA C1X 1.302(5) ? O1XB C1X 1.273(5) ?