#------------------------------------------------------------------------------ #$Date: 2011-09-10 06:16:28 +0300 (Sat, 10 Sep 2011) $ #$Revision: 25271 $ #$URL: file:///home/coder/svn-repositories/cod/cif/2/2012893.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2012893 loop_ _publ_author_name 'Freire, Eleonora' 'Baggio, Sergio' 'Mu\~noz, Juan Carlos' 'Baggio, Ricardo' _publ_section_title ; Bis(1,10-phenanthroline)(thiosulfato)manganese(II) methanol solvate and catena-poly[[diaqua(2,9-dimethyl-1,10-phenanthroline)manganese(II)]-\m-thiosulfato] ; _journal_issue 8 _journal_name_full 'Acta Crystallographica Section C' _journal_page_first m455 _journal_page_last m458 _journal_volume 58 _journal_year 2002 _chemical_formula_iupac '[Mn (S2 O3) (C14 H12 N2) (H2 O)2]' _chemical_formula_moiety 'C14 H16 Mn N2 O5 S2' _chemical_formula_sum 'C14 H16 Mn N2 O5 S2' _chemical_formula_weight 411.35 _chemical_name_systematic ; catena-poly[[diaqua(2,9-dimethyl-1,10-phenanthroline-\k^2^N,N')manganese(II)]- \m-thiosulfato-\k^2^O:S] ; _space_group_IT_number 61 _symmetry_cell_setting orthorhombic _symmetry_space_group_name_Hall '-P 2ac 2ab' _symmetry_space_group_name_H-M 'P b c a' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 90.00 _cell_angle_beta 90.00 _cell_angle_gamma 90.00 _cell_formula_units_Z 8 _cell_length_a 15.3800(12) _cell_length_b 7.0779(5) _cell_length_c 30.148(2) _cell_measurement_reflns_used 108 _cell_measurement_temperature 293(2) _cell_measurement_theta_max 28.08 _cell_measurement_theta_min 1.35 _cell_volume 3281.9(4) _computing_cell_refinement SMART-NT _computing_data_collection 'SMART-NT (Bruker, 2001)' _computing_data_reduction 'SAINT-NT (Bruker, 2000)' _computing_molecular_graphics 'XP in SHELXTL-PC (Sheldrick, 1994)' _computing_publication_material SHELXL97 _computing_structure_refinement 'SHELXL97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS97 (Sheldrick, 1997)' _diffrn_ambient_temperature 293(2) _diffrn_measured_fraction_theta_full 0.999 _diffrn_measured_fraction_theta_max 0.954 _diffrn_measurement_device_type 'Bruker CCD area-detector' _diffrn_measurement_method '\f and \w' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0608 _diffrn_reflns_av_sigmaI/netI 0.0685 _diffrn_reflns_limit_h_max 19 _diffrn_reflns_limit_h_min -20 _diffrn_reflns_limit_k_max 8 _diffrn_reflns_limit_k_min -9 _diffrn_reflns_limit_l_max 36 _diffrn_reflns_limit_l_min -38 _diffrn_reflns_number 18352 _diffrn_reflns_theta_full 27.00 _diffrn_reflns_theta_max 28.08 _diffrn_reflns_theta_min 1.35 _exptl_absorpt_coefficient_mu 1.086 _exptl_absorpt_correction_T_max 0.90 _exptl_absorpt_correction_T_min 0.82 _exptl_absorpt_correction_type refdelf _exptl_absorpt_process_details '(SADABS in SAINT-NT; Bruker, 2000)' _exptl_crystal_colour 'light yellow' _exptl_crystal_density_diffrn 1.665 _exptl_crystal_density_method 'not measured' _exptl_crystal_description Plate _exptl_crystal_F_000 1688 _exptl_crystal_size_max 0.26 _exptl_crystal_size_mid 0.20 _exptl_crystal_size_min 0.10 _refine_diff_density_max 0.516 _refine_diff_density_min -0.397 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 0.853 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 235 _refine_ls_number_reflns 3810 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 0.853 _refine_ls_R_factor_all 0.077 _refine_ls_R_factor_gt 0.041 _refine_ls_shift/su_max 0.009 _refine_ls_shift/su_mean 0.003 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w = 1/[\s^2^(Fo^2^)+(0.0342P)^2^] where P = (Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.078 _refine_ls_wR_factor_ref 0.087 _reflns_number_gt 2341 _reflns_number_total 3810 _reflns_threshold_expression I>2\s(I) _[local]_cod_data_source_file ob1070.cif _[local]_cod_data_source_block II _cod_depositor_comments ; The following automatic conversions were performed: '_geom_bond_publ_flag' value 'Y' changed to 'y' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29 (10 times). '_geom_angle_publ_flag' value 'Y' changed to 'y' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29 (21 time). Automatic conversion script Id: cif_fix_values 1715 2011-07-08 13:25:40Z adriana ; _cod_database_code 2012893 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x+1/2, -y, z+1/2' '-x, y+1/2, -z+1/2' 'x+1/2, -y+1/2, -z' '-x, -y, -z' 'x-1/2, y, -z-1/2' 'x, -y-1/2, z-1/2' '-x-1/2, y-1/2, z' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_type_symbol Mn 0.94408(3) 0.87466(6) 0.127265(14) 0.03413(14) Uani d . 1 Mn S1 0.97740(5) 1.23218(12) 0.11055(3) 0.0529(3) Uani d . 1 S S2 0.88337(4) 1.41039(10) 0.12560(2) 0.03586(19) Uani d . 1 S O1 0.83438(12) 1.4596(3) 0.08556(6) 0.0432(5) Uani d . 1 O O2 0.82477(12) 1.3244(3) 0.15822(6) 0.0427(5) Uani d . 1 O O3 0.92418(14) 1.5809(3) 0.14461(7) 0.0499(6) Uani d . 1 O O1W 0.83555(15) 0.8424(4) 0.08005(8) 0.0476(6) Uani d . 1 O O2W 0.84105(15) 0.9556(4) 0.17335(7) 0.0438(6) Uani d . 1 O N1 1.06030(14) 0.8210(3) 0.08116(8) 0.0358(6) Uani d . 1 N N2 1.06404(14) 0.8798(3) 0.17163(8) 0.0360(6) Uani d . 1 N C1 1.05962(18) 0.7831(4) 0.03790(10) 0.0428(8) Uani d . 1 C C2 1.1366(2) 0.7753(5) 0.01309(11) 0.0554(9) Uani d . 1 C H2A 1.1344 0.7485 -0.0171 0.067 Uiso calc R 1 H C3 1.2137(2) 0.8068(5) 0.03300(12) 0.0583(10) Uani d . 1 C H3A 1.2646 0.8052 0.0164 0.070 Uiso calc R 1 H C4 1.21711(19) 0.8417(4) 0.07835(11) 0.0455(8) Uani d . 1 C C5 1.2973(2) 0.8687(5) 0.10122(12) 0.0564(9) Uani d . 1 C H5A 1.3492 0.8665 0.0854 0.068 Uiso calc R 1 H C6 1.29921(19) 0.8967(5) 0.14453(13) 0.0564(9) Uani d . 1 C H6A 1.3524 0.9131 0.1587 0.068 Uiso calc R 1 H C7 1.2211(2) 0.9022(4) 0.16988(11) 0.0463(8) Uani d . 1 C C8 1.2199(2) 0.9296(5) 0.21559(12) 0.0600(10) Uani d . 1 C H8A 1.2720 0.9481 0.2307 0.072 Uiso calc R 1 H C9 1.1446(2) 0.9298(5) 0.23823(11) 0.0600(10) Uani d . 1 C H9A 1.1445 0.9480 0.2688 0.072 Uiso calc R 1 H C10 1.0661(2) 0.9022(4) 0.21528(10) 0.0460(8) Uani d . 1 C C11 1.14000(17) 0.8791(4) 0.14866(10) 0.0375(7) Uani d . 1 C C12 1.13829(17) 0.8475(4) 0.10160(10) 0.0358(7) Uani d . 1 C C13 0.9826(2) 0.8991(5) 0.24091(10) 0.0646(10) Uani d . 1 C H13A 0.9462 0.7990 0.2300 0.097 Uiso calc R 1 H H13B 0.9532 1.0178 0.2373 0.097 Uiso calc R 1 H H13C 0.9948 0.8786 0.2718 0.097 Uiso calc R 1 H C14 0.9749(2) 0.7468(5) 0.01531(10) 0.0579(9) Uani d . 1 C H14A 0.9368 0.8523 0.0199 0.087 Uiso calc R 1 H H14B 0.9489 0.6347 0.0274 0.087 Uiso calc R 1 H H14C 0.9846 0.7299 -0.0159 0.087 Uiso calc R 1 H H1WA 0.825(2) 0.713(5) 0.0796(12) 0.089(14) Uiso d . 1 H H1WB 0.789(2) 0.884(5) 0.0827(11) 0.066(13) Uiso d . 1 H H2WA 0.834(2) 1.074(5) 0.1701(12) 0.088(15) Uiso d . 1 H H2WB 0.793(2) 0.910(4) 0.1696(10) 0.046(10) Uiso d . 1 H loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 Mn 0.0299(2) 0.0319(3) 0.0406(3) 0.00057(19) 0.0011(2) -0.0018(2) S1 0.0376(4) 0.0375(5) 0.0836(7) 0.0029(4) 0.0175(4) 0.0052(5) S2 0.0320(4) 0.0335(4) 0.0421(5) -0.0016(3) -0.0020(3) -0.0018(3) O1 0.0396(12) 0.0435(13) 0.0464(13) -0.0057(10) -0.0106(9) 0.0001(10) O2 0.0400(12) 0.0387(12) 0.0494(13) 0.0051(10) 0.0129(10) 0.0013(10) O3 0.0674(14) 0.0291(12) 0.0534(14) -0.0116(11) -0.0158(11) -0.0010(10) O1W 0.0352(14) 0.0500(16) 0.0575(15) 0.0068(12) -0.0011(11) -0.0002(12) O2W 0.0354(14) 0.0400(15) 0.0559(15) -0.0019(11) 0.0024(11) -0.0011(11) N1 0.0324(13) 0.0351(14) 0.0400(15) 0.0051(11) 0.0003(11) -0.0041(11) N2 0.0380(14) 0.0305(13) 0.0393(14) 0.0015(11) -0.0022(11) 0.0007(12) C1 0.0426(18) 0.0425(19) 0.043(2) 0.0047(15) 0.0075(15) -0.0032(15) C2 0.056(2) 0.065(2) 0.045(2) 0.0050(19) 0.0129(17) -0.0071(18) C3 0.041(2) 0.066(2) 0.067(3) 0.0082(18) 0.0201(18) 0.0005(19) C4 0.0346(17) 0.042(2) 0.060(2) 0.0032(15) 0.0047(16) 0.0030(16) C5 0.0314(18) 0.055(2) 0.083(3) 0.0069(16) 0.0090(18) 0.010(2) C6 0.0296(18) 0.053(2) 0.087(3) 0.0015(16) -0.0089(18) 0.007(2) C7 0.0400(18) 0.0391(19) 0.060(2) 0.0019(15) -0.0129(16) 0.0067(16) C8 0.050(2) 0.060(2) 0.070(3) 0.0013(19) -0.0262(19) 0.0018(19) C9 0.062(2) 0.071(3) 0.047(2) 0.005(2) -0.0155(18) -0.0006(18) C10 0.0477(19) 0.046(2) 0.044(2) 0.0024(16) -0.0079(16) 0.0015(16) C11 0.0335(16) 0.0281(16) 0.0508(19) 0.0027(13) -0.0057(14) 0.0021(14) C12 0.0313(16) 0.0275(16) 0.0486(19) 0.0031(12) 0.0026(14) 0.0010(14) C13 0.068(2) 0.088(3) 0.039(2) 0.004(2) -0.0011(18) -0.0003(19) C14 0.054(2) 0.080(3) 0.040(2) 0.0005(19) -0.0008(16) -0.0161(19) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' S S 0.1246 0.1234 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Mn Mn 0.3368 0.7283 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_3 _geom_angle _geom_angle_publ_flag O3 Mn O2W 1_545 . 89.76(9) y O3 Mn O1W 1_545 . 87.11(9) y O2W Mn O1W . . 83.61(9) y O3 Mn N2 1_545 . 89.31(8) y O2W Mn N2 . . 102.11(9) y O1W Mn N2 . . 173.24(9) y O3 Mn N1 1_545 . 95.60(8) y O2W Mn N1 . . 173.42(9) y O1W Mn N1 . . 100.44(9) y N2 Mn N1 . . 74.20(8) y O3 Mn S1 1_545 . 175.80(6) y O2W Mn S1 . . 90.62(7) y O1W Mn S1 . . 97.08(8) y N2 Mn S1 . . 86.53(6) y N1 Mn S1 . . 83.76(6) y S2 S1 Mn . . 115.36(4) ? O1 S2 O2 . . 109.60(12) y O1 S2 O3 . . 110.13(12) y O2 S2 O3 . . 109.89(12) y O1 S2 S1 . . 109.86(9) y O2 S2 S1 . . 109.85(9) y O3 S2 S1 . . 107.48(10) y S2 O3 Mn . 1_565 138.71(12) ? Mn O1W H1WA . . 104(2) ? Mn O1W H1WB . . 126(2) ? H1WA O1W H1WB . . 102(3) ? Mn O2W H2WA . . 106(2) ? Mn O2W H2WB . . 118(2) ? H2WA O2W H2WB . . 105(3) ? C1 N1 C12 . . 118.6(2) ? C1 N1 Mn . . 128.34(18) ? C12 N1 Mn . . 112.90(18) ? C10 N2 C11 . . 119.1(2) ? C10 N2 Mn . . 127.12(19) ? C11 N2 Mn . . 113.40(18) ? N1 C1 C2 . . 121.6(3) ? N1 C1 C14 . . 119.2(2) ? C2 C1 C14 . . 119.1(3) ? C3 C2 C1 . . 119.9(3) ? C3 C2 H2A . . 120.0 ? C1 C2 H2A . . 120.0 ? C2 C3 C4 . . 120.0(3) ? C2 C3 H3A . . 120.0 ? C4 C3 H3A . . 120.0 ? C3 C4 C12 . . 117.7(3) ? C3 C4 C5 . . 122.1(3) ? C12 C4 C5 . . 120.2(3) ? C6 C5 C4 . . 121.1(3) ? C6 C5 H5A . . 119.4 ? C4 C5 H5A . . 119.4 ? C5 C6 C7 . . 121.1(3) ? C5 C6 H6A . . 119.5 ? C7 C6 H6A . . 119.5 ? C8 C7 C11 . . 117.0(3) ? C8 C7 C6 . . 123.1(3) ? C11 C7 C6 . . 119.9(3) ? C9 C8 C7 . . 120.9(3) ? C9 C8 H8A . . 119.5 ? C7 C8 H8A . . 119.5 ? C8 C9 C10 . . 119.4(3) ? C8 C9 H9A . . 120.3 ? C10 C9 H9A . . 120.3 ? N2 C10 C9 . . 121.7(3) ? N2 C10 C13 . . 119.3(3) ? C9 C10 C13 . . 119.0(3) ? N2 C11 C7 . . 121.9(3) ? N2 C11 C12 . . 119.2(2) ? C7 C11 C12 . . 118.8(3) ? N1 C12 C4 . . 122.1(3) ? N1 C12 C11 . . 119.0(2) ? C4 C12 C11 . . 118.9(3) ? C10 C13 H13A . . 109.5 ? C10 C13 H13B . . 109.5 ? H13A C13 H13B . . 109.5 ? C10 C13 H13C . . 109.5 ? H13A C13 H13C . . 109.5 ? H13B C13 H13C . . 109.5 ? C1 C14 H14A . . 109.5 ? C1 C14 H14B . . 109.5 ? H14A C14 H14B . . 109.5 ? C1 C14 H14C . . 109.5 ? H14A C14 H14C . . 109.5 ? H14B C14 H14C . . 109.5 ? loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag Mn O3 1_545 2.1655(19) y Mn O2W . 2.184(2) y Mn O1W . 2.206(2) y Mn N2 . 2.279(2) y Mn N1 . 2.296(2) y Mn S1 . 2.6306(9) y S1 S2 . 1.9719(11) y S2 O1 . 1.4648(19) y S2 O2 . 1.4663(19) y S2 O3 . 1.4763(19) y O3 Mn 1_565 2.1655(19) ? O1W H1WA . 0.93(4) ? O1W H1WB . 0.78(3) ? O2W H2WA . 0.85(4) ? O2W H2WB . 0.82(3) ? N1 C1 . 1.331(3) ? N1 C12 . 1.362(3) ? N2 C10 . 1.326(4) ? N2 C11 . 1.358(3) ? C1 C2 . 1.401(4) ? C1 C14 . 1.492(4) ? C2 C3 . 1.348(4) ? C2 H2A . 0.9300 ? C3 C4 . 1.391(4) ? C3 H3A . 0.9300 ? C4 C12 . 1.401(4) ? C4 C5 . 1.426(4) ? C5 C6 . 1.321(5) ? C5 H5A . 0.9300 ? C6 C7 . 1.424(4) ? C6 H6A . 0.9300 ? C7 C8 . 1.392(4) ? C7 C11 . 1.411(4) ? C8 C9 . 1.344(4) ? C8 H8A . 0.9300 ? C9 C10 . 1.406(4) ? C9 H9A . 0.9300 ? C10 C13 . 1.499(4) ? C11 C12 . 1.437(4) ? C13 H13A . 0.9600 ? C13 H13B . 0.9600 ? C13 H13C . 0.9600 ? C14 H14A . 0.9600 ? C14 H14B . 0.9600 ? C14 H14C . 0.9600 ? loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA O1W H1WA O1 1_545 0.93(4) 1.81(4) 2.714(3) 164(3) O1W H1WB O1 8_755 0.79(3) 1.96(3) 2.747(3) 173(3) O2W H2WA O2 . 0.84(4) 1.83(4) 2.662(3) 173(4) O2W H2WB O2 8_755 0.83(3) 1.93(3) 2.752(3) 175(3)