#------------------------------------------------------------------------------ #$Date: 2011-05-06 19:31:55 +0300 (Fri, 06 May 2011) $ #$Revision: 19323 $ #$URL: file:///home/coder/svn-repositories/cod/cif/2/2018047.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2018047 loop_ _publ_author_name 'Ghadermazi, Mohammad' 'Olmstead, Marilyn M.' 'Attar Gharamaleki, Jafar' 'Rostami, Shahideh' _publ_section_title ; Statistically disordered short hydrogen bonds in (pipzH~2~)(cdoH)~2~ and a comparison with (pipzH~2~)(cdo)·H~2~O (pipz is piperazine and cdoH~2~ is chelidonic acid) ; _journal_coeditor_code SK3402 _journal_issue 4 _journal_name_full 'Acta Crystallographica Section C' _journal_page_first o134 _journal_page_last o138 _journal_volume 67 _journal_year 2011 _chemical_formula_iupac 'C4 H12 N2 2+ , 2C7 H3 O6 -' _chemical_formula_moiety 'C4 H12 N2 2+, 2(C7 H3 O6 -)' _chemical_formula_sum 'C18 H18 N2 O12' _chemical_formula_weight 454.34 _chemical_name_common (pipH~2~)(cdoH)~2~ _chemical_name_systematic ; piperazine-1,4-diium bis(6-carboxy-4-oxo-4H-pyran-2-carboxylate) ; _space_group_IT_number 2 _symmetry_cell_setting triclinic _symmetry_space_group_name_Hall '-P 1' _symmetry_space_group_name_H-M 'P -1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL97 _cell_angle_alpha 90.377(2) _cell_angle_beta 94.110(2) _cell_angle_gamma 104.538(3) _cell_formula_units_Z 1 _cell_length_a 6.7880(3) _cell_length_b 8.0650(4) _cell_length_c 8.5675(4) _cell_measurement_reflns_used 5711 _cell_measurement_temperature 87(2) _cell_measurement_theta_max 31.5 _cell_measurement_theta_min 2.6 _cell_volume 452.70(4) _computing_cell_refinement 'SAINT (Bruker, 2010)' _computing_data_collection 'APEX2 (Bruker, 2010)' _computing_data_reduction 'SAINT (Bruker, 2010)' _computing_molecular_graphics 'XP in SHELXTL (Sheldrick, 2008)' _computing_publication_material 'SHELXL97 (Sheldrick, 2008)' _computing_structure_refinement 'SHELXL97 (Sheldrick, 2008)' _computing_structure_solution 'SHELXS97 (Sheldrick, 2008)' _diffrn_ambient_temperature 87(2) _diffrn_detector_area_resol_mean 8.3 _diffrn_measured_fraction_theta_full 0.986 _diffrn_measured_fraction_theta_max 0.986 _diffrn_measurement_device_type 'Bruker SMART APEXII' _diffrn_measurement_method \w _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0114 _diffrn_reflns_av_sigmaI/netI 0.0124 _diffrn_reflns_limit_h_max 9 _diffrn_reflns_limit_h_min -9 _diffrn_reflns_limit_k_max 11 _diffrn_reflns_limit_k_min -11 _diffrn_reflns_limit_l_max 12 _diffrn_reflns_limit_l_min -12 _diffrn_reflns_number 7496 _diffrn_reflns_theta_full 31.54 _diffrn_reflns_theta_max 31.54 _diffrn_reflns_theta_min 2.38 _exptl_absorpt_coefficient_mu 0.143 _exptl_absorpt_correction_T_max 0.976 _exptl_absorpt_correction_T_min 0.956 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details '(SADABS; Sheldrick, 1996)' _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.667 _exptl_crystal_density_method 'not measured' _exptl_crystal_description block _exptl_crystal_F_000 236 _exptl_crystal_size_max 0.36 _exptl_crystal_size_mid 0.34 _exptl_crystal_size_min 0.22 _refine_diff_density_max 0.529 _refine_diff_density_min -0.235 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.056 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 153 _refine_ls_number_reflns 2971 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.056 _refine_ls_R_factor_all 0.0328 _refine_ls_R_factor_gt 0.0313 _refine_ls_shift/su_max 0.001 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w = 1/[\s^2^(Fo^2^)+(0.0569P)^2^+0.1111P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.0909 _refine_ls_wR_factor_ref 0.0923 _reflns_number_gt 2806 _reflns_number_total 2971 _reflns_threshold_expression I>2\s(I) _[local]_cod_data_source_file sk3402.cif _[local]_cod_data_source_block II _cod_database_code 2018047 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, -y, -z' loop_ _atom_site_type_symbol _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_disorder_assembly _atom_site_disorder_group O O1 0.74410(8) 0.54080(6) 0.11379(6) 0.01081(11) Uani d . 1 . . O O2 0.91492(9) 0.85356(7) 0.03521(6) 0.01557(12) Uani d . 1 . . H H2 0.977(8) 0.964(6) 0.006(7) 0.056(11) Uiso d P 0.50 . . O O3 0.86543(9) 0.78085(7) -0.22173(6) 0.01539(12) Uani d . 1 . . O O4 0.62761(9) 0.13354(7) -0.19429(7) 0.01478(12) Uani d . 1 . . O O5 0.58838(9) 0.23123(7) 0.39606(6) 0.01451(12) Uani d . 1 . . O O6 0.60388(9) 0.51366(7) 0.38810(7) 0.01521(12) Uani d . 1 . . H H6 0.523(7) 0.502(6) 0.469(5) 0.046(9) Uiso d P 0.50 . . C C1 0.77985(10) 0.56304(9) -0.03965(8) 0.01025(13) Uani d . 1 . . C C2 0.74579(11) 0.43258(9) -0.14573(8) 0.01153(13) Uani d . 1 . . H H2A 0.7744 0.4561 -0.2514 0.014 Uiso calc R 1 . . C C3 0.66578(10) 0.25639(9) -0.10008(8) 0.01113(13) Uani d . 1 . . C C4 0.63217(11) 0.23805(9) 0.06593(8) 0.01156(13) Uani d . 1 . . H H4 0.5836 0.1273 0.1068 0.014 Uiso calc R 1 . . C C5 0.66982(10) 0.37790(9) 0.16164(8) 0.01017(13) Uani d . 1 . . C C6 0.61799(10) 0.36981(9) 0.33080(8) 0.01090(13) Uani d . 1 . . C C7 0.85932(10) 0.74826(9) -0.08149(8) 0.01129(13) Uani d . 1 . . N N1 0.81573(9) 1.02489(8) -0.44256(7) 0.01217(12) Uani d . 1 . . H H1A 0.7998 0.9521 -0.3596 0.015 Uiso calc R 1 . . H H1B 0.7091 1.0766 -0.4481 0.015 Uiso calc R 1 . . C C8 0.80952(11) 0.92372(9) -0.59066(8) 0.01256(13) Uani d . 1 . . H H8A 0.8168 1.0002 -0.6811 0.015 Uiso calc R 1 . . H H8B 0.6793 0.8341 -0.6042 0.015 Uiso calc R 1 . . C C9 1.01302(11) 1.15908(9) -0.41500(8) 0.01219(13) Uani d . 1 . . H H9A 1.0144 1.2216 -0.3149 0.015 Uiso calc R 1 . . H H9B 1.0264 1.2426 -0.5002 0.015 Uiso calc R 1 . . loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 O1 0.0142(2) 0.0079(2) 0.0094(2) 0.00030(17) 0.00286(17) 0.00102(17) O2 0.0219(3) 0.0097(2) 0.0120(2) -0.00178(19) 0.00101(19) -0.00019(19) O3 0.0214(3) 0.0126(2) 0.0111(2) 0.0018(2) 0.00261(19) 0.00244(18) O4 0.0184(3) 0.0117(2) 0.0131(2) 0.00134(19) 0.00252(19) -0.00338(19) O5 0.0189(3) 0.0120(2) 0.0132(2) 0.00420(19) 0.00339(19) 0.00338(19) O6 0.0221(3) 0.0102(2) 0.0131(2) 0.00213(19) 0.00652(19) -0.00104(18) C1 0.0109(3) 0.0097(3) 0.0096(3) 0.0012(2) 0.0017(2) 0.0013(2) C2 0.0129(3) 0.0109(3) 0.0103(3) 0.0017(2) 0.0017(2) 0.0000(2) C3 0.0115(3) 0.0102(3) 0.0113(3) 0.0018(2) 0.0016(2) -0.0005(2) C4 0.0136(3) 0.0091(3) 0.0114(3) 0.0015(2) 0.0023(2) 0.0001(2) C5 0.0114(3) 0.0086(3) 0.0102(3) 0.0013(2) 0.0021(2) 0.0012(2) C6 0.0112(3) 0.0107(3) 0.0100(3) 0.0013(2) 0.0013(2) -0.0002(2) C7 0.0110(3) 0.0099(3) 0.0123(3) 0.0011(2) 0.0016(2) 0.0010(2) N1 0.0123(3) 0.0111(3) 0.0128(3) 0.0020(2) 0.0027(2) -0.0003(2) C8 0.0128(3) 0.0122(3) 0.0118(3) 0.0016(2) -0.0001(2) -0.0012(2) C9 0.0131(3) 0.0097(3) 0.0128(3) 0.0011(2) 0.0014(2) -0.0012(2) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_3 _geom_angle _geom_angle_publ_flag C1 O1 C5 . . 117.73(5) ? C7 O2 H2 . . 113(3) ? C6 O6 H6 . . 113(3) ? C2 C1 O1 . . 123.44(6) ? C2 C1 C7 . . 122.85(6) ? O1 C1 C7 . . 113.71(6) ? C1 C2 C3 . . 120.76(6) ? C1 C2 H2A . . 119.6 ? C3 C2 H2A . . 119.6 ? O4 C3 C2 . . 122.84(6) ? O4 C3 C4 . . 123.14(6) ? C2 C3 C4 . . 114.02(6) ? C5 C4 C3 . . 120.26(6) ? C5 C4 H4 . . 119.9 ? C3 C4 H4 . . 119.9 ? C4 C5 O1 . . 123.76(6) ? C4 C5 C6 . . 122.98(6) ? O1 C5 C6 . . 113.10(6) ? O5 C6 O6 . . 127.44(7) ? O5 C6 C5 . . 118.82(6) ? O6 C6 C5 . . 113.70(6) ? O3 C7 O2 . . 127.56(7) ? O3 C7 C1 . . 117.31(6) ? O2 C7 C1 . . 115.13(6) ? C8 N1 C9 . . 111.47(5) ? C8 N1 H1A . . 109.3 ? C9 N1 H1A . . 109.3 ? C8 N1 H1B . . 109.3 ? C9 N1 H1B . . 109.3 ? H1A N1 H1B . . 108.0 ? N1 C8 C9 . 2_774 110.03(6) ? N1 C8 H8A . . 109.7 ? C9 C8 H8A 2_774 . 109.7 ? N1 C8 H8B . . 109.7 ? C9 C8 H8B 2_774 . 109.7 ? H8A C8 H8B . . 108.2 ? N1 C9 C8 . 2_774 109.96(6) ? N1 C9 H9A . . 109.7 ? C8 C9 H9A 2_774 . 109.7 ? N1 C9 H9B . . 109.7 ? C8 C9 H9B 2_774 . 109.7 ? H9A C9 H9B . . 108.2 ? loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag O1 C1 . 1.3588(8) ? O1 C5 . 1.3610(8) ? O2 C7 . 1.2794(9) y O2 H2 . 0.93(4) ? O3 C7 . 1.2330(9) y O4 C3 . 1.2373(8) y O5 C6 . 1.2303(9) y O6 C6 . 1.2850(9) y O6 H6 . 0.91(4) ? C1 C2 . 1.3496(9) ? C1 C7 . 1.5104(10) ? C2 C3 . 1.4551(10) ? C2 H2A . 0.9500 ? C3 C4 . 1.4592(10) ? C4 C5 . 1.3502(9) ? C4 H4 . 0.9500 ? C5 C6 . 1.5137(10) ? N1 C8 . 1.4962(9) ? N1 C9 . 1.4981(9) ? N1 H1A . 0.9200 ? N1 H1B . 0.9200 ? C8 C9 2_774 1.5151(10) ? C8 H8A . 0.9900 ? C8 H8B . 0.9900 ? C9 C8 2_774 1.5151(10) ? C9 H9A . 0.9900 ? C9 H9B . 0.9900 ? loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA O2 H2 O2 2_775 0.93(4) 1.52(4) 2.4549(11) 177(6) O6 H6 O6 2_666 0.91(4) 1.53(4) 2.4395(11) 177(5) N1 H1A O3 . 0.92 1.94 2.8032(8) 156 N1 H1B O5 1_564 0.92 2.09 2.8419(8) 138 loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion_site_symmetry_1 _geom_torsion_site_symmetry_2 _geom_torsion_site_symmetry_3 _geom_torsion_site_symmetry_4 _geom_torsion _geom_torsion_publ_flag C5 O1 C1 C2 . . . . -0.09(10) ? C5 O1 C1 C7 . . . . 179.24(6) ? O1 C1 C2 C3 . . . . 0.31(11) ? C7 C1 C2 C3 . . . . -178.95(6) ? C1 C2 C3 O4 . . . . 178.15(7) ? C1 C2 C3 C4 . . . . -1.06(10) ? O4 C3 C4 C5 . . . . -177.53(7) ? C2 C3 C4 C5 . . . . 1.68(10) ? C3 C4 C5 O1 . . . . -1.62(11) ? C3 C4 C5 C6 . . . . 173.51(6) ? C1 O1 C5 C4 . . . . 0.77(10) ? C1 O1 C5 C6 . . . . -174.80(6) ? C4 C5 C6 O5 . . . . 18.57(11) ? O1 C5 C6 O5 . . . . -165.82(6) ? C4 C5 C6 O6 . . . . -159.28(7) ? O1 C5 C6 O6 . . . . 16.33(9) ? C2 C1 C7 O3 . . . . 10.25(11) ? O1 C1 C7 O3 . . . . -169.08(6) ? C2 C1 C7 O2 . . . . -169.06(7) ? O1 C1 C7 O2 . . . . 11.62(9) ? C9 N1 C8 C9 . . . 2_774 57.73(8) ? C8 N1 C9 C8 . . . 2_774 -57.69(8) ?