#------------------------------------------------------------------------------ #$Date: 2009-11-18 16:56:34 +0200 (Wed, 18 Nov 2009) $ #$Revision: 858 $ #$URL: file:///home/coder/svn-repositories/cod/cif/2/2200667.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_2200667 _journal_name_full 'Acta Crystallographica, Section E' _journal_year 2001 _journal_volume 57 _journal_page_first m514 _journal_page_last m516 _publ_section_title ; Hydrated sodium cytidine-5'-monophosphate ; _space_group_IT_number 4 _symmetry_space_group_name_Hall 'P 2yb' _symmetry_space_group_name_H-M 'P 1 21 1' _[local]_cod_cif_authors_sg_H-M 'P 21' loop_ _publ_author_name 'Gh. Borodi' 'A. Hernanz' 'I. Bratu' 'Mihaela Pop' 'R. Navarro' _chemical_formula_moiety '2Na 1+, C9 H4 N3 O8 P 2-, 6.5H6 O' _chemical_formula_sum 'C9 H25 N3 Na2 O14.5 P' _[local]_cod_chemical_formula_sum_orig 'C9 H25 N3 Na2 O14.50 P' _chemical_formula_iupac '2Na 1+, C9 H4 N3 O8 P 2-, 6.5H6 O' _chemical_formula_weight 484.27 _symmetry_cell_setting monoclinic loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y+1/2, -z' _cell_length_a 14.042(2) _cell_length_b 8.924(2) _cell_length_c 16.091(3) _cell_angle_alpha 90.00 _cell_angle_beta 94.410(2) _cell_angle_gamma 90.00 _cell_volume 2010.4(7) _cell_formula_units_Z 4 _cell_measurement_temperature 173(2) _exptl_crystal_density_diffrn 1.600 _diffrn_ambient_temperature 293(2) loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_disorder_assembly _atom_site_disorder_group _atom_site_type_symbol P1 .16968(18) -.0823(3) -.06490(16) .0229(6) Uani d . 1 . . P P2 .39336(18) .1952(3) .63987(15) .0198(6) Uani d . 1 . . P Na1 .0835(3) -.0826(6) -.2672(3) .0423(12) Uani d . 1 . . Na Na2 .4120(7) .3703(14) -.0182(6) .048(3) Uiso d P .50 . . Na Na3 .1728(3) .1896(9) .5255(3) .0670(19) Uani d . 1 . . Na Na4 .2335(3) -.3538(5) -.3429(3) .0396(12) Uani d . 1 . . Na Na5 .4356(7) .2826(15) .0085(6) .054(3) Uiso d P .50 . . Na O1 .0873(5) -.1337(8) -.1248(4) .0286(18) Uani d . 1 . . O O2 .1901(5) .0816(8) -.0701(5) .0314(18) Uani d . 1 . . O O3 .2581(5) -.1764(9) -.0737(4) .0292(18) Uani d . 1 . . O O4 .1371(5) -.1059(9) .0279(4) .0312(18) Uani d . 1 . . O O5 -.0680(5) .0977(9) .1924(5) .036(2) Uani d . 1 . . O H5 -.1227 .0637 .1785 .053 Uiso calc R 1 . . H O6 -.1200(5) -.1802(10) .1454(5) .044(2) Uani d . 1 . . O H6 -.1422 -.2544 .1182 .066 Uiso calc R 1 . . H O7 .1006(5) -.2005(9) .1957(4) .0313(18) Uani d . 1 . . O O8 .0725(5) .0252(11) .3942(5) .042(2) Uani d . 1 . . O O9 .3346(5) .2469(9) .5628(4) .0317(19) Uani d . 1 . . O O10 .3747(5) .2880(9) .7162(4) .0298(18) Uani d . 1 . . O O11 .3837(5) .0294(8) .6580(4) .0281(18) Uani d . 1 . . O O12 .5036(5) .2166(8) .6217(5) .0293(18) Uani d . 1 . . O O13 .7240(5) .0249(8) .4688(5) .0317(18) Uani d . 1 . . O H13A .7377 -.0781 .4789 .038 Uiso calc R 1 . . H O14 .6850(5) .3037(10) .4262(4) .037(2) Uani d . 1 . . O H14 .6898 .4089 .4184 .044 Uiso calc R 1 . . H O15 .7016(5) .3083(8) .6201(4) .0264(16) Uani d . 1 . . O O16 .9300(5) .0809(11) .6144(4) .039(2) Uani d . 1 . . O O17 .2537(5) -.1368(10) -.2495(4) .039(2) Uani d . 1 . . O O18 .1935(5) -.5996(10) -.2992(5) .046(2) Uani d . 1 . . O O19 .0759(5) -.2665(11) -.3748(5) .046(2) Uani d . 1 . . O O20 .3957(7) -.4302(10) -.2318(6) .063(3) Uani d . 1 . . O O21 .3753(5) .1765(11) -.1244(5) .044(2) Uani d . 1 . . O O22 .4998(5) -.1758(10) .7342(5) .042(2) Uani d . 1 . . O O23 .2795(7) .5301(11) -.0977(6) .065(3) Uani d . 1 . . O O24 .1118(6) .1267(12) .6513(6) .056(3) Uani d . 1 . . O O25 .5326(7) -.0222(13) .8897(6) .063(3) Uani d . 1 . . O O26 .4106(7) -.2112(16) .0395(7) .088(4) Uani d . 1 . . O O27 .4537(10) .072(2) .0972(8) .113(5) Uani d . 1 . . O O28 .0438(6) .3623(12) .5052(5) .057(3) Uani d . 1 . . O O29 .2885(13) .247(3) .0494(12) .056(5) Uiso d P .50 . . O O30 .2644(12) .311(2) .0210(11) .048(5) Uiso d P .50 . . O N1 .1389(6) .0166(11) .2694(5) .026(2) Uani d . 1 . . N N2 .2150(6) .1356(11) .3870(5) .030(2) Uani d . 1 . . N N3 .3610(6) .2396(11) .3805(5) .033(2) Uani d . 1 . . N H3A .4107 .2642 .3533 .040 Uiso calc R 1 . . H H3B .3601 .2618 .4338 .040 Uiso calc R 1 . . H N4 .7813(5) .0935(11) .6599(5) .024(2) Uani d . 1 . . N N5 .9086(6) -.0274(11) .7379(5) .029(2) Uani d . 1 . . N N6 .8829(6) -.1274(11) .8657(5) .030(2) Uani d . 1 . . N H6A .8449 -.1507 .9047 .036 Uiso calc R 1 . . H H6B .9443 -.1482 .8728 .036 Uiso calc R 1 . . H C1 .0603(7) -.0722(13) .2309(6) .026(2) Uani d . 1 . . C H1 .0177 -.1042 .2747 .031 Uiso calc R 1 . . H C2 .0006(8) .0061(14) .1604(6) .030(3) Uani d . 1 . . C H2 .0429 .0673 .1265 .036 Uiso calc R 1 . . H C3 -.0375(7) -.1284(13) .1101(6) .028(3) Uani d . 1 . . C H3 -.0519 -.1011 .0501 .034 Uiso calc R 1 . . H C4 .0429(7) -.2419(13) .1200(6) .027(2) Uani d . 1 . . C H4 .0146 -.3431 .1285 .032 Uiso calc R 1 . . H C5 .1067(8) -.2517(15) .0498(7) .037(3) Uani d . 1 . . C H5A .1630 -.3144 .0667 .044 Uiso calc R 1 . . H H5B .0718 -.2994 .0009 .044 Uiso calc R 1 . . H C6 .1405(7) .0579(14) .3526(6) .027(3) Uani d . 1 . . C C7 .2890(7) .1704(12) .3421(6) .026(2) Uani d . 1 . . C C8 .2888(8) .1321(14) .2578(6) .031(3) Uani d . 1 . . C H8 .3398 .1602 .2254 .037 Uiso calc R 1 . . H C9 .2141(7) .0546(14) .2248(6) .028(3) Uani d . 1 . . C H9 .2131 .0246 .1681 .034 Uiso calc R 1 . . H C10 .7490(7) .1859(13) .5880(6) .022(2) Uani d . 1 . . C H10 .8054 .2217 .5592 .027 Uiso calc R 1 . . H C11 .6787(7) .1107(13) .5261(6) .024(2) Uani d . 1 . . C H11 .6332 .0475 .5558 .028 Uiso calc R 1 . . H C12 .6279(7) .2492(12) .4889(6) .023(2) Uani d . 1 . . C H12 .5617 .2249 .4655 .028 Uiso calc R 1 . . H C13 .6269(6) .3559(13) .5593(6) .023(2) Uani d . 1 . . C H13 .6428 .4581 .5390 .028 Uiso calc R 1 . . H C14 .5355(7) .3652(13) .6035(7) .029(3) Uani d . 1 . . C H14A .5471 .4228 .6559 .035 Uiso calc R 1 . . H H14B .4857 .4177 .5676 .035 Uiso calc R 1 . . H C15 .8771(7) .0448(13) .6700(7) .029(3) Uani d . 1 . . C C16 .8475(7) -.0606(13) .7956(6) .026(2) Uani d . 1 . . C C17 .7488(7) -.0167(13) .7859(6) .027(3) Uani d . 1 . . C H17 .7063 -.0387 .8274 .032 Uiso calc R 1 . . H C18 .7201(7) .0548(13) .7177(6) .027(2) Uani d . 1 . . C H18 .6545 .0804 .7082 .032 Uiso calc R 1 . . H loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 P1 .0229(13) .0223(15) .0238(14) .0026(13) .0027(11) .0012(13) P2 .0233(13) .0162(14) .0205(13) -.0012(12) .0061(10) -.0010(12) Na1 .034(2) .051(3) .043(3) .012(2) .0094(19) -.005(3) Na3 .034(3) .129(6) .039(3) -.001(4) .007(2) .007(4) Na4 .042(3) .031(3) .048(3) .001(2) .018(2) .000(2) O1 .023(4) .027(5) .035(4) .002(3) -.002(3) .003(3) O2 .035(4) .018(4) .042(5) .001(4) .008(3) .009(4) O3 .018(3) .033(5) .037(4) .003(3) .000(3) -.001(4) O4 .039(4) .022(5) .034(4) -.013(4) .011(3) -.002(3) O5 .031(4) .034(5) .042(4) .012(4) .006(3) -.009(4) O6 .033(4) .038(5) .063(5) -.022(4) .022(4) -.027(4) O7 .035(4) .030(5) .028(4) .007(4) -.006(3) -.007(4) O8 .033(4) .064(6) .028(4) -.011(4) .007(4) -.006(4) O9 .029(4) .039(5) .027(4) -.006(4) .003(3) .002(4) O10 .031(4) .026(5) .033(4) .009(4) .005(3) -.003(4) O11 .033(4) .021(4) .031(4) -.003(3) .006(3) .004(3) O12 .021(3) .018(4) .051(4) .003(3) .016(3) .004(4) O13 .035(4) .013(4) .048(5) .000(3) .012(4) .000(4) O14 .049(5) .037(5) .026(4) .003(4) .014(3) .012(4) O15 .030(4) .019(4) .030(4) .002(3) -.001(3) .001(3) O16 .023(4) .065(7) .031(4) .011(4) .008(3) .012(4) O17 .029(4) .049(5) .039(4) .005(4) .010(3) .003(4) O18 .038(4) .042(6) .059(5) .007(4) .011(4) .011(5) O19 .038(5) .049(6) .051(5) -.002(4) .004(4) .002(4) O20 .073(7) .029(6) .090(7) -.017(5) .037(6) -.013(5) O21 .036(4) .053(6) .041(4) .000(4) -.002(3) -.003(5) O22 .037(4) .050(6) .041(4) .018(4) .007(4) .010(4) O23 .081(7) .038(6) .078(7) -.003(5) .026(6) -.012(5) O24 .053(5) .059(7) .058(5) -.013(5) .011(5) .008(5) O25 .052(6) .077(8) .058(6) .022(5) -.003(5) -.001(6) O26 .061(7) .098(10) .099(9) .001(7) -.023(6) .016(8) O27 .118(11) .137(15) .085(9) -.021(10) .000(8) -.008(9) O28 .059(5) .056(7) .057(6) .002(5) .009(5) -.010(5) N1 .026(5) .029(6) .024(5) -.009(4) .001(4) .005(4) N2 .023(5) .038(6) .029(5) .006(4) .000(4) .003(4) N3 .028(5) .040(7) .032(5) -.001(5) .004(4) -.004(5) N4 .020(4) .028(5) .024(4) -.004(4) -.001(4) .004(4) N5 .027(5) .038(6) .021(5) .002(4) -.006(4) -.006(4) N6 .030(5) .032(6) .028(5) .004(4) .000(4) .008(4) C1 .032(6) .028(6) .018(5) -.011(6) .007(4) .000(5) C2 .033(6) .028(7) .030(6) -.008(5) .005(5) .002(5) C3 .026(5) .035(7) .024(5) -.010(5) .003(4) -.001(5) C4 .029(6) .015(5) .036(6) -.010(5) .002(5) -.004(5) C5 .040(7) .039(8) .031(6) -.002(6) .007(5) .003(6) C6 .025(6) .040(7) .016(5) .006(5) -.004(4) -.005(5) C7 .016(5) .018(6) .042(6) .002(5) -.001(5) -.002(5) C8 .033(6) .033(7) .026(6) -.011(6) .002(5) .003(5) C9 .029(5) .034(7) .021(5) -.002(5) .004(4) .006(5) C10 .017(5) .028(6) .021(5) -.001(5) -.004(4) -.003(5) C11 .031(6) .019(6) .023(5) .008(5) .012(4) .000(5) C12 .020(5) .026(6) .024(5) -.004(5) .006(4) .006(5) C13 .021(5) .027(6) .020(5) -.004(5) -.004(4) .007(5) C14 .023(5) .022(6) .044(7) .003(5) .010(5) .000(5) C15 .020(5) .032(7) .033(6) -.003(5) -.006(5) .004(6) C16 .023(5) .027(7) .029(6) -.007(5) .008(4) -.005(5) C17 .027(6) .030(7) .026(6) .007(5) .015(5) -.006(5) C18 .020(5) .033(6) .028(5) .001(5) .004(4) .009(5) loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag P1 O2 . 1.494(8) ? P1 O3 . 1.515(7) ? P1 O1 . 1.518(7) ? P1 O4 . 1.609(7) ? P1 Na1 . 3.385(5) ? P2 O9 . 1.507(7) ? P2 O11 . 1.516(8) ? P2 O10 . 1.521(7) ? P2 O12 . 1.609(7) ? Na1 O1 . 2.334(8) ? Na1 O24 1_554 2.334(11) ? Na1 O19 . 2.381(10) ? Na1 O17 . 2.434(8) ? Na1 N5 1_454 2.512(10) ? Na1 Na4 . 3.489(6) ? Na2 Na5 . .940(13) ? Na2 O30 . 2.27(2) ? Na2 O25 2_656 2.357(14) ? Na2 O29 . 2.38(2) ? Na2 O21 . 2.458(13) ? Na2 O23 . 2.602(15) ? Na2 O26 2_655 2.643(15) ? Na2 O27 2_655 2.966(19) ? Na3 O24 . 2.326(10) yes Na3 O9 . 2.361(9) yes Na3 O28 . 2.382(11) yes Na3 N2 . 2.400(10) yes Na3 O8 . 2.855(10) yes Na3 C6 . 3.022(11) ? Na4 O14 2_645 2.306(9) yes Na4 O19 . 2.364(9) yes Na4 O18 . 2.384(10) yes Na4 O13 2_645 2.413(9) yes Na4 O17 . 2.455(9) yes Na4 O20 . 2.868(12) yes Na5 O29 . 2.24(2) yes Na5 O26 2_655 2.350(15) yes Na5 O27 . 2.36(2) yes Na5 O25 2_656 2.410(16) yes Na5 O21 . 2.430(13) yes Na5 O30 . 2.44(2) yes O4 C5 . 1.422(15) ? O5 C2 . 1.392(13) ? O5 H5 . .8400 ? O6 C3 . 1.407(12) ? O6 H6 . .8400 ? O7 C1 . 1.415(13) ? O7 C4 . 1.457(11) ? O8 C6 . 1.242(12) ? O12 C14 . 1.437(13) ? O13 C11 . 1.389(12) ? O13 Na4 2_655 2.413(9) ? O13 H13A . .9500 ? O14 C12 . 1.422(11) ? O14 Na4 2_655 2.306(9) ? O14 H14 . .9500 ? O15 C10 . 1.399(13) ? O15 C13 . 1.442(11) ? O16 C15 . 1.247(12) ? O24 Na1 1_556 2.334(11) ? O25 Na2 2_646 2.357(14) ? O25 Na5 2_646 2.410(16) ? O26 Na5 2_645 2.350(15) ? O26 Na2 2_645 2.643(15) ? O27 Na2 2_645 2.966(19) ? O29 O30 . .79(2) ? N1 C9 . 1.364(13) ? N1 C6 . 1.388(13) ? N1 C1 . 1.457(13) ? N2 C6 . 1.337(14) ? N2 C7 . 1.346(13) ? N3 C7 . 1.300(13) ? N3 H3B . .8800 ? N3 H3A . .8800 ? N4 C18 . 1.358(12) ? N4 C15 . 1.412(12) ? N4 C10 . 1.464(13) ? N5 C15 . 1.316(13) ? N5 C16 . 1.345(13) ? N5 Na1 1_656 2.512(10) ? N6 C16 . 1.337(13) ? N6 H6B . .8800 ? N6 H6A . .8800 ? C1 C2 . 1.528(15) ? C1 H1 . 1.0000 ? C2 C3 . 1.521(16) ? C2 H2 . 1.0000 ? C3 C4 . 1.516(15) ? C3 H3 . 1.0000 ? C4 C5 . 1.498(15) ? C4 H4 . 1.0000 ? C5 H5A . .9900 ? C5 H5B . .9900 ? C7 C8 . 1.399(14) ? C8 C9 . 1.333(15) ? C8 H8 . .9500 ? C9 H9 . .9500 ? C10 C11 . 1.505(14) ? C10 H10 . 1.0000 ? C11 C12 . 1.527(15) ? C11 H11 . 1.0000 ? C12 C13 . 1.481(15) ? C12 H12 . 1.0000 ? C13 C14 . 1.516(14) ? C13 H13 . 1.0000 ? C14 H14A . .9900 ? C14 H14B . .9900 ? C16 C17 . 1.437(14) ? C17 C18 . 1.307(15) ? C17 H17 . .9500 ? C18 H18 . .9500 ?