#------------------------------------------------------------------------------ #$Date: 2011-09-10 06:16:28 +0300 (Sat, 10 Sep 2011) $ #$Revision: 25271 $ #$URL: file:///home/coder/svn-repositories/cod/cif/2/2212408.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2212408 loop_ _publ_author_name 'Zhao, Hong-Bin' 'Cao, Hua' 'Xu, Yong-Jun' 'Yang, Pan-Long' 'Liu, Yan-Li' _publ_section_title ; Butyl 2-(piperidine-1-carbothioylsulfanyl)acetate ; _journal_coeditor_code WN2109 _journal_issue 2 _journal_name_full 'Acta Crystallographica Section E' _journal_page_first o865 _journal_page_last o866 _journal_volume 63 _journal_year 2007 _chemical_formula_iupac 'C12 H21 N O2 S2' _chemical_formula_moiety 'C12 H21 N O2 S2' _chemical_formula_sum 'C12 H21 N O2 S2' _chemical_formula_weight 275.42 _chemical_name_systematic ; Butyl 2-(piperidine-1-carbothioylsulfanyl)acetate ; _space_group_IT_number 14 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-P 2yn' _symmetry_space_group_name_H-M 'P 1 21/n 1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _cell_angle_alpha 90.00 _cell_angle_beta 107.513(7) _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 6.504(3) _cell_length_b 24.123(12) _cell_length_c 9.506(5) _cell_measurement_reflns_used 2040 _cell_measurement_temperature 273(2) _cell_measurement_theta_max 23.03 _cell_measurement_theta_min 2.40 _cell_volume 1422.3(12) _computing_cell_refinement 'SAINT-Plus (Bruker, 2003)' _computing_data_collection 'SMART (Bruker, 1998)' _computing_data_reduction SAINT-Plus _computing_molecular_graphics 'SHELXTL (Bruker, 1997)' _computing_publication_material SHELXTL _computing_structure_refinement 'SHELXL97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS97 (Sheldrick, 1997)' _diffrn_ambient_temperature 273(2) _diffrn_measured_fraction_theta_full 0.988 _diffrn_measured_fraction_theta_max 0.988 _diffrn_measurement_device_type 'Bruker SMART APEX CCD' _diffrn_measurement_method '\f and \w' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0261 _diffrn_reflns_av_sigmaI/netI 0.0304 _diffrn_reflns_limit_h_max 8 _diffrn_reflns_limit_h_min -8 _diffrn_reflns_limit_k_max 29 _diffrn_reflns_limit_k_min -29 _diffrn_reflns_limit_l_max 11 _diffrn_reflns_limit_l_min -6 _diffrn_reflns_number 8173 _diffrn_reflns_theta_full 26.11 _diffrn_reflns_theta_max 26.11 _diffrn_reflns_theta_min 1.69 _diffrn_standards_number 0 _exptl_absorpt_coefficient_mu 0.366 _exptl_absorpt_correction_T_max 0.9717 _exptl_absorpt_correction_T_min 0.8794 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details '(SADABS in SAINT-Plus; Bruker, 2003)' _exptl_crystal_colour colorless _exptl_crystal_density_diffrn 1.286 _exptl_crystal_density_method 'not measured' _exptl_crystal_description plate _exptl_crystal_F_000 592 _exptl_crystal_size_max 0.36 _exptl_crystal_size_mid 0.24 _exptl_crystal_size_min 0.08 _refine_diff_density_max 0.303 _refine_diff_density_min -0.167 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.024 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 155 _refine_ls_number_reflns 2769 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.024 _refine_ls_R_factor_all 0.0731 _refine_ls_R_factor_gt 0.0487 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0833P)^2^+0.0758P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.1214 _refine_ls_wR_factor_ref 0.1380 _reflns_number_gt 1953 _reflns_number_total 2769 _reflns_threshold_expression I>2\s(I) _[local]_cod_data_source_file wn2109.cif _[local]_cod_data_source_block I _[local]_cod_cif_authors_sg_H-M 'P 21/n' _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Monoclinic' changed to 'monoclinic' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_values 1715 2011-07-08 13:25:40Z adriana ; _cod_database_code 2212408 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x+1/2, y+1/2, -z+1/2' '-x, -y, -z' 'x-1/2, -y-1/2, z-1/2' loop_ _atom_site_type_symbol _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy C C1 1.2478(4) -0.02321(12) 0.7652(3) 0.0681(8) Uani d . 1 H H1A 1.3431 0.0087 0.7844 0.082 Uiso calc R 1 H H1B 1.2892 -0.0475 0.6970 0.082 Uiso calc R 1 C C2 1.2674(5) -0.05344(12) 0.9064(3) 0.0747(8) Uani d . 1 H H2A 1.2372 -0.0280 0.9768 0.090 Uiso calc R 1 H H2B 1.4141 -0.0667 0.9476 0.090 Uiso calc R 1 C C3 1.1140(5) -0.10195(12) 0.8828(3) 0.0737(8) Uani d . 1 H H3A 1.1196 -0.1181 0.9774 0.088 Uiso calc R 1 H H3B 1.1577 -0.1301 0.8248 0.088 Uiso calc R 1 C C4 0.8852(5) -0.08365(12) 0.8037(3) 0.0705(8) Uani d . 1 H H4A 0.7920 -0.1159 0.7795 0.085 Uiso calc R 1 H H4B 0.8333 -0.0599 0.8682 0.085 Uiso calc R 1 C C5 0.8767(5) -0.05275(10) 0.6648(3) 0.0657(7) Uani d . 1 H H5A 0.9177 -0.0772 0.5969 0.079 Uiso calc R 1 H H5B 0.7309 -0.0399 0.6176 0.079 Uiso calc R 1 C C6 0.9636(4) 0.04736(9) 0.7047(2) 0.0483(6) Uani d . 1 C C7 0.6509(4) 0.12928(11) 0.6650(3) 0.0619(7) Uani d . 1 H H7A 0.5084 0.1363 0.6737 0.074 Uiso calc R 1 H H7B 0.7551 0.1412 0.7564 0.074 Uiso calc R 1 C C8 0.6801(4) 0.16428(10) 0.5411(3) 0.0571(6) Uani d . 1 C C9 0.7264(5) 0.25895(12) 0.4813(4) 0.0753(8) Uani d . 1 H H9A 0.6155 0.2868 0.4714 0.090 Uiso calc R 1 H H9B 0.7074 0.2424 0.3852 0.090 Uiso calc R 1 C C10 0.9456(5) 0.28531(12) 0.5363(4) 0.0774(9) Uani d . 1 H H10A 0.9524 0.3158 0.4715 0.093 Uiso calc R 1 H H10B 0.9631 0.3006 0.6336 0.093 Uiso calc R 1 C C11 1.1290(5) 0.24686(12) 0.5454(3) 0.0750(8) Uani d . 1 H H11A 1.2628 0.2666 0.5897 0.090 Uiso calc R 1 H H11B 1.1222 0.2165 0.6107 0.090 Uiso calc R 1 C C12 1.1354(5) 0.22341(15) 0.4029(4) 0.0971(11) Uani d . 1 H H12A 1.0074 0.2020 0.3602 0.146 Uiso calc R 1 H H12B 1.2598 0.2001 0.4190 0.146 Uiso calc R 1 H H12C 1.1431 0.2530 0.3371 0.146 Uiso calc R 1 N N1 1.0246(3) -0.00510(8) 0.7005(2) 0.0550(5) Uani d . 1 O O1 0.6723(4) 0.14809(8) 0.4213(2) 0.0807(6) Uani d . 1 O O2 0.7074(3) 0.21661(7) 0.5855(2) 0.0687(5) Uani d . 1 S S1 1.13068(11) 0.10062(3) 0.76094(9) 0.0683(3) Uani d . 1 S S2 0.68005(11) 0.05665(3) 0.64571(8) 0.0663(3) Uani d . 1 loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 C1 0.0606(16) 0.0588(16) 0.090(2) 0.0017(13) 0.0302(15) -0.0040(14) C2 0.0705(19) 0.0688(19) 0.072(2) 0.0130(14) 0.0021(15) -0.0017(15) C3 0.098(2) 0.0626(18) 0.0588(17) 0.0052(15) 0.0202(16) 0.0103(14) C4 0.082(2) 0.0532(15) 0.084(2) -0.0147(14) 0.0363(16) -0.0044(15) C5 0.0711(18) 0.0492(15) 0.0660(18) -0.0077(12) 0.0043(14) -0.0056(12) C6 0.0542(14) 0.0513(13) 0.0406(13) -0.0082(10) 0.0162(10) 0.0044(10) C7 0.0637(16) 0.0616(16) 0.0646(17) 0.0075(13) 0.0257(13) 0.0083(13) C8 0.0606(16) 0.0534(15) 0.0581(17) 0.0085(12) 0.0190(12) 0.0050(12) C9 0.083(2) 0.0581(17) 0.082(2) 0.0115(15) 0.0216(16) 0.0202(15) C10 0.091(2) 0.0580(17) 0.081(2) -0.0034(15) 0.0227(17) 0.0049(15) C11 0.077(2) 0.0677(18) 0.073(2) -0.0105(15) 0.0110(15) 0.0068(15) C12 0.088(2) 0.117(3) 0.084(2) -0.001(2) 0.0223(19) -0.006(2) N1 0.0607(13) 0.0453(11) 0.0558(12) -0.0063(9) 0.0125(10) 0.0013(9) O1 0.1261(18) 0.0642(12) 0.0553(12) 0.0077(11) 0.0326(11) 0.0007(10) O2 0.0901(14) 0.0549(11) 0.0660(12) 0.0015(9) 0.0308(10) 0.0019(9) S1 0.0605(4) 0.0540(4) 0.0910(6) -0.0155(3) 0.0236(4) -0.0068(4) S2 0.0535(4) 0.0570(4) 0.0811(5) -0.0074(3) 0.0092(3) 0.0141(3) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' S S 0.1246 0.1234 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle N1 C1 C2 109.1(2) N1 C1 H1A 109.9 C2 C1 H1A 109.9 N1 C1 H1B 109.9 C2 C1 H1B 109.9 H1A C1 H1B 108.3 C1 C2 C3 111.7(2) C1 C2 H2A 109.3 C3 C2 H2A 109.3 C1 C2 H2B 109.3 C3 C2 H2B 109.3 H2A C2 H2B 107.9 C2 C3 C4 110.7(2) C2 C3 H3A 109.5 C4 C3 H3A 109.5 C2 C3 H3B 109.5 C4 C3 H3B 109.5 H3A C3 H3B 108.1 C5 C4 C3 110.6(2) C5 C4 H4A 109.5 C3 C4 H4A 109.5 C5 C4 H4B 109.5 C3 C4 H4B 109.5 H4A C4 H4B 108.1 N1 C5 C4 109.7(2) N1 C5 H5A 109.7 C4 C5 H5A 109.7 N1 C5 H5B 109.7 C4 C5 H5B 109.7 H5A C5 H5B 108.2 N1 C6 S1 124.91(19) N1 C6 S2 113.71(17) S1 C6 S2 121.38(14) C8 C7 S2 115.40(19) C8 C7 H7A 108.4 S2 C7 H7A 108.4 C8 C7 H7B 108.4 S2 C7 H7B 108.4 H7A C7 H7B 107.5 O1 C8 O2 125.4(2) O1 C8 C7 125.8(2) O2 C8 C7 108.7(2) O2 C9 C10 109.0(2) O2 C9 H9A 109.9 C10 C9 H9A 109.9 O2 C9 H9B 109.9 C10 C9 H9B 109.9 H9A C9 H9B 108.3 C11 C10 C9 114.5(3) C11 C10 H10A 108.6 C9 C10 H10A 108.6 C11 C10 H10B 108.6 C9 C10 H10B 108.6 H10A C10 H10B 107.6 C12 C11 C10 115.3(3) C12 C11 H11A 108.5 C10 C11 H11A 108.5 C12 C11 H11B 108.5 C10 C11 H11B 108.5 H11A C11 H11B 107.5 C11 C12 H12A 109.5 C11 C12 H12B 109.5 H12A C12 H12B 109.5 C11 C12 H12C 109.5 H12A C12 H12C 109.5 H12B C12 H12C 109.5 C6 N1 C1 122.6(2) C6 N1 C5 124.7(2) C1 N1 C5 111.2(2) C8 O2 C9 118.9(2) C6 S2 C7 103.00(12) loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance C1 N1 1.462(3) C1 C2 1.499(4) C1 H1A 0.9700 C1 H1B 0.9700 C2 C3 1.510(4) C2 H2A 0.9700 C2 H2B 0.9700 C3 C4 1.517(4) C3 H3A 0.9700 C3 H3B 0.9700 C4 C5 1.502(4) C4 H4A 0.9700 C4 H4B 0.9700 C5 N1 1.471(3) C5 H5A 0.9700 C5 H5B 0.9700 C6 N1 1.330(3) C6 S1 1.664(2) C6 S2 1.773(3) C7 C8 1.507(4) C7 S2 1.778(3) C7 H7A 0.9700 C7 H7B 0.9700 C8 O1 1.191(3) C8 O2 1.326(3) C9 O2 1.454(3) C9 C10 1.504(4) C9 H9A 0.9700 C9 H9B 0.9700 C10 C11 1.493(4) C10 H10A 0.9700 C10 H10B 0.9700 C11 C12 1.480(4) C11 H11A 0.9700 C11 H11B 0.9700 C12 H12A 0.9600 C12 H12B 0.9600 C12 H12C 0.9600 loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA C1 H1A S1 . 0.97 2.59 3.080(3) 111.7 C5 H5B S2 . 0.97 2.38 2.914(3) 114.2 C7 H7B S1 . 0.97 2.62 3.056(3) 107.5 C9 H9B O1 . 0.97 2.32 2.735(4) 104.7 C7 H7A S1 1_455 0.97 2.95 3.823(3) 150.6