#------------------------------------------------------------------------------ #$Date: 2013-12-28 15:58:47 +0200 (Sat, 28 Dec 2013) $ #$Revision: 91933 $ #$URL: file:///home/coder/svn-repositories/cod/cif/2/21/24/2212417.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2212417 loop_ _publ_author_name 'Mei Chen' 'Paul H. M. Harrison' 'Lian-Quan Gu' 'Hai-Hu Yu' _publ_section_title 1-Acetyl-3,4-dimethyl-6-phenylacetyl-3a,4,6,6a-tetrahydroimidazo[4,5-d]imidazole-2,5(1H,3H)-dithione _journal_coeditor_code XU2175 _journal_issue 2 _journal_name_full 'Acta Crystallographica Section E' _journal_page_first o613 _journal_page_last o614 _journal_volume 63 _journal_year 2007 _chemical_formula_iupac 'C18 H22 N4 O2 S2' _chemical_formula_moiety 'C18 H22 N4 O2 S2' _chemical_formula_sum 'C18 H22 N4 O2 S2' _chemical_formula_weight 390.52 _chemical_name_systematic ; 1-Acetyl-3,4-dimethyl-6-phenylacetyl-3a,4,6,6a- tetrahydroimidazo[4,5-d]imidazole-2,5(1H,3H)-dithione ; _space_group_IT_number 15 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-C 2yc' _symmetry_space_group_name_H-M 'C 1 2/c 1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 90.00 _cell_angle_beta 109.370(3) _cell_angle_gamma 90.00 _cell_formula_units_Z 8 _cell_length_a 25.161(4) _cell_length_b 9.3806(15) _cell_length_c 16.702(3) _cell_measurement_reflns_used 4002 _cell_measurement_temperature 173(2) _cell_measurement_theta_max 26.9 _cell_measurement_theta_min 2.3 _cell_volume 3719.0(11) _computing_cell_refinement 'SAINT (Bruker, 1999)' _computing_data_collection 'SMART (Bruker, 1999)' _computing_data_reduction SAINT _computing_molecular_graphics 'SHELXTL (Bruker, 1999)' _computing_publication_material SHELXTL _computing_structure_refinement 'SHELXL97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS97 (Sheldrick, 1997)' _diffrn_ambient_temperature 173(2) _diffrn_measured_fraction_theta_full 0.99 _diffrn_measured_fraction_theta_max 0.99 _diffrn_measurement_device_type 'Bruker SMART CCD area-detector' _diffrn_measurement_method '\f and \w' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.024 _diffrn_reflns_av_sigmaI/netI 0.033 _diffrn_reflns_limit_h_max 32 _diffrn_reflns_limit_h_min -30 _diffrn_reflns_limit_k_max 7 _diffrn_reflns_limit_k_min -12 _diffrn_reflns_limit_l_max 17 _diffrn_reflns_limit_l_min -21 _diffrn_reflns_number 9828 _diffrn_reflns_theta_full 27.1 _diffrn_reflns_theta_max 27.1 _diffrn_reflns_theta_min 2.3 _diffrn_standards_decay_% 0 _diffrn_standards_interval_count 0 _diffrn_standards_interval_time 0 _diffrn_standards_number 0 _exptl_absorpt_coefficient_mu 0.307 _exptl_absorpt_correction_T_max 0.927 _exptl_absorpt_correction_T_min 0.869 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details '(SADABS; Sheldrick, 1996)' _exptl_crystal_colour colorless _exptl_crystal_density_diffrn 1.395 _exptl_crystal_density_method 'not measured' _exptl_crystal_description block _exptl_crystal_F_000 1648 _exptl_crystal_size_max 0.47 _exptl_crystal_size_mid 0.25 _exptl_crystal_size_min 0.25 _refine_diff_density_max 0.54 _refine_diff_density_min -0.23 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.048 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 240 _refine_ls_number_reflns 4063 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.048 _refine_ls_R_factor_all 0.0691 _refine_ls_R_factor_gt 0.0487 _refine_ls_shift/su_max 0.001 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0733P)^2^+2.7496P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.1220 _refine_ls_wR_factor_ref 0.1352 _reflns_number_gt 3033 _reflns_number_total 4063 _reflns_threshold_expression I>2\s(I) _[local]_cod_data_source_file xu2175.cif _[local]_cod_data_source_block I _[local]_cod_cif_authors_sg_H-M 'C 2/c' _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Monoclinic' changed to 'monoclinic' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_enum 1527 2010-12-29 10:47:43Z saulius The following automatic conversions were performed: '_symmetry_cell_setting' value 'Monoclinic' changed to 'monoclinic' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_values 1715 2011-07-08 13:25:40Z adriana ; _cod_original_cell_volume 3718.9(10) _cod_database_code 2212417 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y, -z+1/2' 'x+1/2, y+1/2, z' '-x+1/2, y+1/2, -z+1/2' '-x, -y, -z' 'x, -y, z-1/2' '-x+1/2, -y+1/2, -z' 'x+1/2, -y+1/2, z-1/2' loop_ _atom_site_type_symbol _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy S S1 0.31206(3) 0.31649(7) 0.31407(4) 0.04171(19) Uani d . 1 S S2 0.51642(3) 0.75203(8) 0.54890(4) 0.0460(2) Uani d . 1 O O1 0.29697(6) 0.36991(17) 0.55759(10) 0.0357(4) Uani d . 1 N N3 0.40947(7) 0.76038(19) 0.45005(12) 0.0322(4) Uani d . 1 C C12 0.34130(10) 0.1905(2) 0.49911(15) 0.0353(5) Uani d . 1 H H12A 0.3095 0.1437 0.4554 0.042 Uiso calc R 1 H H12B 0.3732 0.1955 0.4770 0.042 Uiso calc R 1 N N1 0.34071(7) 0.45290(18) 0.46657(10) 0.0260(4) Uani d . 1 C C8 0.45000(9) 0.6986(2) 0.51441(13) 0.0301(5) Uani d . 1 C C11 0.32394(9) 0.3409(2) 0.51267(13) 0.0290(5) Uani d . 1 N N4 0.42529(7) 0.58788(18) 0.54489(10) 0.0256(4) Uani d . 1 C C5 0.36219(8) 0.5910(2) 0.50467(12) 0.0247(4) Uani d . 1 C C1 0.33575(8) 0.4498(2) 0.38181(13) 0.0281(5) Uani d . 1 N N2 0.35062(7) 0.57824(19) 0.35995(11) 0.0292(4) Uani d . 1 C C3 0.35586(9) 0.6853(2) 0.42594(13) 0.0269(4) Uani d . 1 C C9 0.44973(9) 0.4887(2) 0.60906(13) 0.0314(5) Uani d . 1 C C2 0.34219(11) 0.6172(3) 0.27165(14) 0.0400(6) Uani d . 1 H H2A 0.3584 0.5433 0.2453 0.060 Uiso calc R 1 H H2B 0.3608 0.7085 0.2701 0.060 Uiso calc R 1 H H2C 0.3018 0.6259 0.2405 0.060 Uiso calc R 1 C C10 0.51232(10) 0.4816(3) 0.65091(16) 0.0444(6) Uani d . 1 H H10A 0.5253 0.5666 0.6861 0.067 Uiso calc R 1 H H10B 0.5305 0.4774 0.6074 0.067 Uiso calc R 1 H H10C 0.5221 0.3963 0.6866 0.067 Uiso calc R 1 O O2 0.41886(7) 0.40806(17) 0.62919(10) 0.0378(4) Uani d . 1 C C6 0.33530(10) 0.6524(2) 0.56566(14) 0.0330(5) Uani d . 1 H H6A 0.2942 0.6485 0.5399 0.050 Uiso calc R 1 H H6B 0.3472 0.7517 0.5783 0.050 Uiso calc R 1 H H6C 0.3470 0.5968 0.6183 0.050 Uiso calc R 1 C C4 0.30528(10) 0.7852(3) 0.39986(16) 0.0389(5) Uani d . 1 H H4A 0.3094 0.8561 0.4446 0.058 Uiso calc R 1 H H4B 0.2708 0.7301 0.3913 0.058 Uiso calc R 1 H H4C 0.3032 0.8337 0.3469 0.058 Uiso calc R 1 C C7 0.42077(12) 0.8819(3) 0.40347(17) 0.0486(7) Uani d . 1 H H7A 0.4476 0.9462 0.4431 0.073 Uiso calc R 1 H H7B 0.3856 0.9330 0.3753 0.073 Uiso calc R 1 H H7C 0.4368 0.8480 0.3608 0.073 Uiso calc R 1 C C13 0.35847(9) 0.0995(2) 0.57836(14) 0.0330(5) Uani d . 1 C C18 0.32187(10) 0.0679(2) 0.62269(15) 0.0363(5) Uani d . 1 H H18 0.2851 0.1080 0.6048 0.044 Uiso calc R 1 C C17 0.33853(12) -0.0212(2) 0.69270(15) 0.0417(6) Uani d . 1 H H17 0.3133 -0.0419 0.7228 0.050 Uiso calc R 1 C C16 0.39206(13) -0.0801(3) 0.71874(16) 0.0517(7) Uani d . 1 H H16 0.4039 -0.1402 0.7672 0.062 Uiso calc R 1 C C14 0.41164(10) 0.0386(3) 0.60546(17) 0.0475(6) Uani d . 1 H H14 0.4372 0.0592 0.5761 0.057 Uiso calc R 1 C C15 0.42785(12) -0.0512(3) 0.67423(18) 0.0573(8) Uani d . 1 H H15 0.4642 -0.0938 0.6911 0.069 Uiso calc R 1 loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 S1 0.0463(4) 0.0428(4) 0.0326(3) -0.0112(3) 0.0085(3) -0.0148(3) S2 0.0275(3) 0.0534(4) 0.0535(4) -0.0165(3) 0.0083(3) -0.0004(3) O1 0.0337(8) 0.0374(9) 0.0409(9) -0.0067(7) 0.0190(7) -0.0031(7) N3 0.0283(9) 0.0312(10) 0.0349(10) -0.0079(8) 0.0077(8) 0.0033(8) C12 0.0371(13) 0.0309(11) 0.0419(13) -0.0051(9) 0.0182(10) -0.0050(10) N1 0.0237(9) 0.0272(9) 0.0256(9) -0.0058(7) 0.0063(7) -0.0053(7) C8 0.0283(11) 0.0334(11) 0.0295(11) -0.0056(9) 0.0107(9) -0.0053(9) C11 0.0223(10) 0.0326(11) 0.0310(11) -0.0078(9) 0.0075(8) -0.0036(9) N4 0.0213(8) 0.0296(9) 0.0240(9) -0.0035(7) 0.0052(7) -0.0022(7) C5 0.0197(10) 0.0268(10) 0.0266(10) -0.0031(8) 0.0066(8) -0.0032(8) C1 0.0193(10) 0.0361(12) 0.0272(11) -0.0006(8) 0.0055(8) -0.0043(9) N2 0.0288(9) 0.0333(10) 0.0240(9) -0.0012(7) 0.0065(7) -0.0011(7) C3 0.0245(10) 0.0278(10) 0.0272(10) -0.0014(8) 0.0071(8) -0.0012(8) C9 0.0311(11) 0.0350(11) 0.0260(11) -0.0012(9) 0.0065(9) -0.0031(9) C2 0.0434(14) 0.0483(14) 0.0258(12) 0.0021(11) 0.0080(10) 0.0029(10) C10 0.0290(12) 0.0548(15) 0.0436(14) 0.0021(11) 0.0041(10) 0.0057(12) O2 0.0344(9) 0.0434(9) 0.0319(8) -0.0058(7) 0.0059(7) 0.0067(7) C6 0.0353(12) 0.0337(11) 0.0337(12) -0.0033(9) 0.0164(10) -0.0060(9) C4 0.0343(13) 0.0376(12) 0.0399(13) 0.0081(10) 0.0058(10) 0.0008(10) C7 0.0499(16) 0.0412(14) 0.0531(16) -0.0112(12) 0.0148(12) 0.0138(12) C13 0.0305(11) 0.0283(11) 0.0378(12) -0.0065(9) 0.0080(9) -0.0052(9) C18 0.0361(12) 0.0306(11) 0.0413(13) -0.0042(10) 0.0114(10) -0.0007(10) C17 0.0544(15) 0.0338(12) 0.0367(13) -0.0067(11) 0.0147(11) -0.0034(10) C16 0.0635(18) 0.0430(14) 0.0325(13) 0.0042(13) -0.0058(12) -0.0020(11) C14 0.0293(12) 0.0558(16) 0.0526(16) -0.0039(11) 0.0070(11) -0.0041(13) C15 0.0367(15) 0.0691(19) 0.0521(17) 0.0077(14) -0.0042(12) -0.0032(15) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' S S 0.1246 0.1234 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle N2 C1 N1 108.70(17) N2 C1 S1 123.96(16) N1 C1 S1 127.25(16) N2 C2 H2A 109.5 N2 C2 H2B 109.5 H2A C2 H2B 109.5 N2 C2 H2C 109.5 H2A C2 H2C 109.5 H2B C2 H2C 109.5 N3 C3 N2 112.59(17) N3 C3 C4 113.06(18) N2 C3 C4 110.40(17) N3 C3 C5 102.52(15) N2 C3 C5 101.82(16) C4 C3 C5 115.79(18) C3 C4 H4A 109.5 C3 C4 H4B 109.5 H4A C4 H4B 109.5 C3 C4 H4C 109.5 H4A C4 H4C 109.5 H4B C4 H4C 109.5 N1 C5 N4 111.07(16) N1 C5 C6 116.53(17) N4 C5 C6 110.37(16) N1 C5 C3 102.55(15) N4 C5 C3 100.72(15) C6 C5 C3 114.29(17) C5 C6 H6A 109.5 C5 C6 H6B 109.5 H6A C6 H6B 109.5 C5 C6 H6C 109.5 H6A C6 H6C 109.5 H6B C6 H6C 109.5 N3 C7 H7A 109.5 N3 C7 H7B 109.5 H7A C7 H7B 109.5 N3 C7 H7C 109.5 H7A C7 H7C 109.5 H7B C7 H7C 109.5 N3 C8 N4 107.59(18) N3 C8 S2 124.01(17) N4 C8 S2 128.40(17) O2 C9 N4 118.00(19) O2 C9 C10 121.1(2) N4 C9 C10 120.9(2) C9 C10 H10A 109.5 C9 C10 H10B 109.5 H10A C10 H10B 109.5 C9 C10 H10C 109.5 H10A C10 H10C 109.5 H10B C10 H10C 109.5 O1 C11 N1 119.64(19) O1 C11 C12 123.8(2) N1 C11 C12 116.56(18) C13 C12 C11 114.05(18) C13 C12 H12A 108.7 C11 C12 H12A 108.7 C13 C12 H12B 108.7 C11 C12 H12B 108.7 H12A C12 H12B 107.6 C14 C13 C18 118.4(2) C14 C13 C12 118.9(2) C18 C13 C12 122.6(2) C15 C14 C13 120.9(3) C15 C14 H14 119.6 C13 C14 H14 119.6 C16 C15 C14 120.5(3) C16 C15 H15 119.7 C14 C15 H15 119.7 C15 C16 C17 119.7(3) C15 C16 H16 120.1 C17 C16 H16 120.1 C18 C17 C16 119.8(3) C18 C17 H17 120.1 C16 C17 H17 120.1 C17 C18 C13 120.6(2) C17 C18 H18 119.7 C13 C18 H18 119.7 C1 N1 C11 126.04(17) C1 N1 C5 111.04(16) C11 N1 C5 122.81(16) C1 N2 C3 111.93(16) C1 N2 C2 122.37(18) C3 N2 C2 122.22(18) C8 N3 C3 113.64(17) C8 N3 C7 122.19(19) C3 N3 C7 123.82(18) C8 N4 C9 129.88(18) C8 N4 C5 110.83(16) C9 N4 C5 119.05(16) loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance C1 N2 1.347(3) C1 N1 1.380(3) C1 S1 1.659(2) C2 N2 1.465(3) C2 H2A 0.9800 C2 H2B 0.9800 C2 H2C 0.9800 C3 N3 1.455(3) C3 N2 1.465(3) C3 C4 1.523(3) C3 C5 1.549(3) C4 H4A 0.9800 C4 H4B 0.9800 C4 H4C 0.9800 C5 N1 1.465(2) C5 N4 1.505(2) C5 C6 1.511(3) C6 H6A 0.9800 C6 H6B 0.9800 C6 H6C 0.9800 C7 N3 1.460(3) C7 H7A 0.9800 C7 H7B 0.9800 C7 H7C 0.9800 C8 N3 1.343(3) C8 N4 1.391(3) C8 S2 1.654(2) C9 O2 1.209(3) C9 N4 1.398(3) C9 C10 1.498(3) C10 H10A 0.9800 C10 H10B 0.9800 C10 H10C 0.9800 C11 O1 1.198(3) C11 N1 1.446(3) C11 C12 1.516(3) C12 C13 1.513(3) C12 H12A 0.9900 C12 H12B 0.9900 C13 C14 1.385(3) C13 C18 1.392(3) C14 C15 1.373(4) C14 H14 0.9500 C15 C16 1.371(4) C15 H15 0.9500 C16 C17 1.386(4) C16 H16 0.9500 C17 C18 1.385(3) C17 H17 0.9500 C18 H18 0.9500 loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_publ_flag C12 H12B S2 5_666 0.99 2.99 3.957(3) 166 y loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion N3 C3 C5 N1 -135.14(16) N2 C3 C5 N1 -18.49(18) C4 C3 C5 N1 101.3(2) N3 C3 C5 N4 -20.50(18) N2 C3 C5 N4 96.15(16) C4 C3 C5 N4 -144.06(18) N3 C3 C5 C6 97.81(19) N2 C3 C5 C6 -145.54(17) C4 C3 C5 C6 -25.8(2) O1 C11 C12 C13 -39.0(3) N1 C11 C12 C13 142.14(19) C11 C12 C13 C14 -122.8(2) C11 C12 C13 C18 60.8(3) C18 C13 C14 C15 0.2(4) C12 C13 C14 C15 -176.3(2) C13 C14 C15 C16 -1.4(4) C14 C15 C16 C17 1.8(4) C15 C16 C17 C18 -0.9(4) C16 C17 C18 C13 -0.2(3) C14 C13 C18 C17 0.6(3) C12 C13 C18 C17 177.0(2) N2 C1 N1 C11 174.02(18) S1 C1 N1 C11 -2.6(3) N2 C1 N1 C5 -2.1(2) S1 C1 N1 C5 -178.71(15) O1 C11 N1 C1 -133.0(2) C12 C11 N1 C1 45.9(3) O1 C11 N1 C5 42.7(3) C12 C11 N1 C5 -138.41(19) N4 C5 N1 C1 -93.39(19) C6 C5 N1 C1 139.07(19) C3 C5 N1 C1 13.5(2) N4 C5 N1 C11 90.3(2) C6 C5 N1 C11 -37.2(3) C3 C5 N1 C11 -162.81(17) N1 C1 N2 C3 -11.5(2) S1 C1 N2 C3 165.25(15) N1 C1 N2 C2 -170.82(18) S1 C1 N2 C2 5.9(3) N3 C3 N2 C1 128.17(18) C4 C3 N2 C1 -104.4(2) C5 C3 N2 C1 19.1(2) N3 C3 N2 C2 -72.5(2) C4 C3 N2 C2 55.0(3) C5 C3 N2 C2 178.47(18) N4 C8 N3 C3 -6.8(2) S2 C8 N3 C3 174.04(16) N4 C8 N3 C7 179.6(2) S2 C8 N3 C7 0.5(3) N2 C3 N3 C8 -90.5(2) C4 C3 N3 C8 143.5(2) C5 C3 N3 C8 18.2(2) N2 C3 N3 C7 82.9(3) C4 C3 N3 C7 -43.1(3) C5 C3 N3 C7 -168.4(2) N3 C8 N4 C9 177.47(19) S2 C8 N4 C9 -3.5(3) N3 C8 N4 C5 -8.3(2) S2 C8 N4 C5 170.73(16) O2 C9 N4 C8 174.4(2) C10 C9 N4 C8 -6.2(3) O2 C9 N4 C5 0.6(3) C10 C9 N4 C5 179.99(19) N1 C5 N4 C8 126.49(18) C6 C5 N4 C8 -102.69(19) C3 C5 N4 C8 18.4(2) N1 C5 N4 C9 -58.6(2) C6 C5 N4 C9 72.2(2) C3 C5 N4 C9 -166.67(17) _cod_database_fobs_code 2212417 _journal_paper_doi 10.1107/S1600536807000402