#------------------------------------------------------------------------------ #$Date: 2008-04-03 13:11:48 +0300 (Thu, 03 Apr 2008) $ #$Revision: 326 $ #$URL: file:///home/coder/svn-repositories/cod/cif/2/2216644.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2216644 loop_ _publ_author_name 'Davies, Melari' 'Goette, Sebastian' 'Kl\"ufers, Peter' 'Schwarz, Thomas' _publ_section_title ;\ Methyl 4,6-O-benzylidene-2,3-dideoxy-3-hydroxyimino-\a-D-erythro-\ pyranoside methanol solvate ; _journal_coeditor_code LN2001 _journal_issue 12 _journal_name_full 'Acta Crystallographica, Section E' _journal_page_first o4765 _journal_page_last o4765 _journal_volume 63 _journal_year 2007 _chemical_formula_moiety 'C14 H17 N O5, C H4 O' _chemical_formula_sum 'C15 H21 N O6' _chemical_formula_weight 311.33 _chemical_name_systematic ; Methyl 4,6-O-benzylidene-2,3-dideoxy-3-hydroxyimino-\a-D-erythro-\ pyranoside methanol solvate ; _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall 'C 2y' _symmetry_space_group_name_H-M 'C 2' _atom_sites_solution_hydrogens difmap _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method 'form98_non/compatible with shelxl97-2' _cell_angle_alpha 90.00 _cell_angle_beta 109.009(3) _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 21.8696(12) _cell_length_b 4.7001(2) _cell_length_c 16.0494(8) _cell_measurement_reflns_used 8876 _cell_measurement_temperature 200(2) _cell_measurement_theta_max 27.485 _cell_measurement_theta_min 3.134 _cell_volume 1559.74(13) _computing_cell_refinement 'Scalepack (Otwinowski & Minor 1997)' _computing_data_collection 'COLLECT (Nonius 2004)' _computing_data_reduction 'Denzo and Scalepack (Otwinowski & Minor 1997)' _computing_molecular_graphics 'ORTEPIII (Burnett & Johnson, 1996)' _computing_publication_material SHELXL97 _computing_structure_refinement 'SHELXL97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS97 (Sheldrick, 1997)' _diffrn_ambient_temperature 200(2) _diffrn_measured_fraction_theta_full 0.988 _diffrn_measured_fraction_theta_max 0.988 _diffrn_measurement_device '95mm CCD camera on \k-goniostat' _diffrn_measurement_device_type 'Nonius KappaCCD' _diffrn_measurement_method 'CCD; rotation images; thick slices' _diffrn_radiation_monochromator 'MONTEL, graded multilayered X-ray optics' _diffrn_radiation_source 'rotating anode' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0731 _diffrn_reflns_av_sigmaI/netI 0.0601 _diffrn_reflns_limit_h_max 28 _diffrn_reflns_limit_h_min -28 _diffrn_reflns_limit_k_max 6 _diffrn_reflns_limit_k_min -6 _diffrn_reflns_limit_l_max 20 _diffrn_reflns_limit_l_min -20 _diffrn_reflns_number 6634 _diffrn_reflns_theta_full 27.63 _diffrn_reflns_theta_max 27.63 _diffrn_reflns_theta_min 3.73 _exptl_absorpt_coefficient_mu 0.103 _exptl_absorpt_correction_type none _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.326 _exptl_crystal_density_method 'not measured' _exptl_crystal_description needle _exptl_crystal_F_000 664 _exptl_crystal_size_max 0.40 _exptl_crystal_size_mid 0.05 _exptl_crystal_size_min 0.045 _refine_diff_density_max 0.184 _refine_diff_density_min -0.235 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.036 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 205 _refine_ls_number_reflns 2006 _refine_ls_number_restraints 1 _refine_ls_restrained_S_all 1.036 _refine_ls_R_factor_all 0.0963 _refine_ls_R_factor_gt 0.0481 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0692P)^2^] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.1089 _refine_ls_wR_factor_ref 0.1277 _reflns_number_gt 1238 _reflns_number_total 2006 _reflns_threshold_expression 'I >2\s(I)' _[local]_cod_data_source_file ln2001.cif loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y, -z' 'x+1/2, y+1/2, z' '-x+1/2, y+1/2, -z' loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _atom_site_type_symbol _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy O O1 0.82189(10) 0.8533(6) 0.73526(14) 0.0475(6) Uani d . 1 O O4 0.98051(9) 0.5771(5) 0.74614(12) 0.0403(6) Uani d . 1 O O6 0.97148(11) 0.5728(7) 0.88686(14) 0.0604(8) Uani d . 1 O O7 0.76006(10) 0.5196(6) 0.63550(15) 0.0513(6) Uani d . 1 O O8 0.87819(10) 0.5175(7) 0.48398(13) 0.0506(7) Uani d . 1 H H88 0.9010 0.4539 0.4550 0.057(3) Uiso calc R 1 N N1 0.91647(11) 0.5482(7) 0.57293(15) 0.0395(7) Uani d . 1 C C1 0.78439(16) 0.7958(8) 0.6454(2) 0.0448(9) Uani d . 1 H H1 0.7472 0.9315 0.6274 0.057(3) Uiso calc R 1 C C2 0.82390(14) 0.8336(9) 0.5833(2) 0.0472(8) Uani d . 1 H H21 0.7993 0.7539 0.5248 0.057(3) Uiso calc R 1 H H22 0.8302 1.0392 0.5755 0.057(3) Uiso calc R 1 C C3 0.88860(14) 0.6914(7) 0.6164(2) 0.0374(7) Uani d . 1 C C4 0.92304(13) 0.7422(8) 0.7127(2) 0.0387(8) Uani d . 1 H H4 0.9350 0.9480 0.7211 0.057(3) Uiso calc R 1 C C5 0.87757(14) 0.6750(8) 0.7645(2) 0.0443(8) Uani d . 1 H H5 0.8643 0.4706 0.7562 0.057(3) Uiso calc R 1 C C6 0.91267(17) 0.7332(11) 0.8605(2) 0.0607(11) Uani d . 1 H H61 0.9224 0.9388 0.8696 0.057(3) Uiso calc R 1 H H62 0.8853 0.6770 0.8963 0.057(3) Uiso calc R 1 C C7 0.71604(17) 0.4730(10) 0.6834(3) 0.0647(12) Uani d . 1 H H71 0.6869 0.6366 0.6755 0.110(7) Uiso calc R 1 H H72 0.7404 0.4498 0.7461 0.110(7) Uiso calc R 1 H H73 0.6907 0.3008 0.6614 0.110(7) Uiso calc R 1 C C8 1.01113(16) 0.6450(8) 0.8370(2) 0.0475(9) Uani d . 1 H H8 1.0199 0.8542 0.8426 0.057(3) Uiso calc R 1 C C9 1.07425(15) 0.4886(8) 0.8695(2) 0.0456(8) Uani d . 1 C C10 1.11891(16) 0.5232(11) 0.8264(2) 0.0598(10) Uani d . 1 H H10 1.1085 0.6407 0.7756 0.057(3) Uiso calc R 1 C C11 1.17843(17) 0.3908(10) 0.8557(2) 0.0600(11) Uani d . 1 H H11 1.2088 0.4198 0.8257 0.057(3) Uiso calc R 1 C C12 1.19364(18) 0.2166(10) 0.9285(2) 0.0601(11) Uani d . 1 H H12 1.2341 0.1209 0.9483 0.057(3) Uiso calc R 1 C C13 1.14973(19) 0.1827(11) 0.9724(3) 0.0706(13) Uani d . 1 H H13 1.1603 0.0653 1.0233 0.057(3) Uiso calc R 1 C C14 1.09005(16) 0.3177(10) 0.9433(2) 0.0556(10) Uani d . 1 H H14 1.0601 0.2924 0.9743 0.057(3) Uiso calc R 1 O O9 0.95366(10) 0.3482(5) 0.39429(15) 0.0450(6) Uani d . 1 H H89 0.9861 0.4391 0.3918 0.110(7) Uiso calc R 1 C C15 0.9600(2) 0.0630(10) 0.3752(4) 0.0866(16) Uani d . 1 H H151 0.9493 0.0391 0.3114 0.110(7) Uiso calc R 1 H H152 0.9305 -0.0522 0.3960 0.110(7) Uiso calc R 1 H H153 1.0046 0.0013 0.4048 0.110(7) Uiso calc R 1 loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 O1 0.0450(11) 0.0520(14) 0.0465(12) 0.0088(12) 0.0165(10) -0.0091(12) O4 0.0380(10) 0.0493(14) 0.0300(10) 0.0059(11) 0.0063(8) -0.0017(10) O6 0.0576(14) 0.090(2) 0.0361(12) 0.0198(16) 0.0187(11) 0.0043(15) O7 0.0430(12) 0.0505(17) 0.0638(15) 0.0044(13) 0.0223(11) -0.0119(14) O8 0.0441(11) 0.0719(18) 0.0323(11) 0.0110(14) 0.0078(9) -0.0057(13) N1 0.0359(12) 0.0500(18) 0.0298(13) 0.0004(14) 0.0067(11) -0.0022(14) C1 0.0428(17) 0.047(2) 0.0451(19) 0.0067(17) 0.0147(15) -0.0061(17) C2 0.0454(17) 0.050(2) 0.0454(18) 0.0123(19) 0.0133(15) 0.0045(18) C3 0.0349(15) 0.0388(18) 0.0399(18) 0.0002(15) 0.0141(14) 0.0006(16) C4 0.0357(15) 0.0407(19) 0.0392(18) 0.0024(15) 0.0117(14) -0.0027(15) C5 0.0453(18) 0.049(2) 0.0401(18) 0.0090(17) 0.0162(15) -0.0016(17) C6 0.058(2) 0.083(3) 0.045(2) 0.018(2) 0.0227(17) -0.004(2) C7 0.053(2) 0.062(3) 0.090(3) -0.003(2) 0.038(2) -0.015(2) C8 0.0493(19) 0.054(2) 0.0320(17) 0.0026(17) 0.0034(15) -0.0049(16) C9 0.0452(17) 0.050(2) 0.0336(16) 0.0003(18) 0.0016(14) -0.0079(17) C10 0.058(2) 0.078(3) 0.0384(18) 0.017(2) 0.0083(16) 0.008(2) C11 0.051(2) 0.074(3) 0.049(2) 0.013(2) 0.0084(17) -0.004(2) C12 0.051(2) 0.055(2) 0.061(2) 0.002(2) -0.0012(19) 0.001(2) C13 0.056(2) 0.074(3) 0.068(3) -0.004(2) 0.000(2) 0.027(2) C14 0.0479(19) 0.062(3) 0.049(2) -0.006(2) 0.0046(16) 0.009(2) O9 0.0444(12) 0.0445(14) 0.0494(13) -0.0022(12) 0.0196(10) -0.0060(12) C15 0.065(3) 0.046(3) 0.159(5) -0.004(2) 0.050(3) -0.024(3) loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance O1 C5 1.426(4) O1 C1 1.433(4) O4 C4 1.425(4) O4 C8 1.429(3) O6 C8 1.400(4) O6 C6 1.431(4) O7 C1 1.392(5) O7 C7 1.431(4) O8 N1 1.407(3) O8 H88 0.8400 N1 C3 1.260(4) C1 C2 1.528(4) C1 H1 1.0000 C2 C3 1.497(4) C2 H21 0.9900 C2 H22 0.9900 C3 C4 1.501(4) C4 C5 1.523(4) C4 H4 1.0000 C5 C6 1.506(4) C5 H5 1.0000 C6 H61 0.9900 C6 H62 0.9900 C7 H71 0.9800 C7 H72 0.9800 C7 H73 0.9800 C8 C9 1.500(5) C8 H8 1.0000 C9 C10 1.378(5) C9 C14 1.378(5) C10 C11 1.380(5) C10 H10 0.9500 C11 C12 1.376(6) C11 H11 0.9500 C12 C13 1.372(6) C12 H12 0.9500 C13 C14 1.388(5) C13 H13 0.9500 C14 H14 0.9500 O9 C15 1.392(5) O9 H89 0.8400 C15 H151 0.9800 C15 H152 0.9800 C15 H153 0.9800 loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle C5 O1 C1 111.6(2) C4 O4 C8 109.0(2) C8 O6 C6 111.6(3) C1 O7 C7 112.3(3) N1 O8 H88 109.5 C3 N1 O8 112.4(2) O7 C1 O1 111.3(3) O7 C1 C2 108.0(3) O1 C1 C2 112.0(3) O7 C1 H1 108.5 O1 C1 H1 108.5 C2 C1 H1 108.5 C3 C2 C1 112.7(3) C3 C2 H21 109.0 C1 C2 H21 109.0 C3 C2 H22 109.0 C1 C2 H22 109.0 H21 C2 H22 107.8 N1 C3 C2 127.9(3) N1 C3 C4 118.9(3) C2 C3 C4 113.2(3) O4 C4 C3 112.7(3) O4 C4 C5 109.5(3) C3 C4 C5 109.4(2) O4 C4 H4 108.4 C3 C4 H4 108.4 C5 C4 H4 108.4 O1 C5 C6 109.0(3) O1 C5 C4 109.8(3) C6 C5 C4 108.4(3) O1 C5 H5 109.9 C6 C5 H5 109.9 C4 C5 H5 109.9 O6 C6 C5 108.4(3) O6 C6 H61 110.0 C5 C6 H61 110.0 O6 C6 H62 110.0 C5 C6 H62 110.0 H61 C6 H62 108.4 O7 C7 H71 109.5 O7 C7 H72 109.5 H71 C7 H72 109.5 O7 C7 H73 109.5 H71 C7 H73 109.5 H72 C7 H73 109.5 O6 C8 O4 111.0(3) O6 C8 C9 110.7(3) O4 C8 C9 108.5(3) O6 C8 H8 108.9 O4 C8 H8 108.9 C9 C8 H8 108.9 C10 C9 C14 118.7(3) C10 C9 C8 119.4(3) C14 C9 C8 122.0(3) C9 C10 C11 121.3(4) C9 C10 H10 119.3 C11 C10 H10 119.3 C12 C11 C10 119.8(4) C12 C11 H11 120.1 C10 C11 H11 120.1 C13 C12 C11 119.3(4) C13 C12 H12 120.4 C11 C12 H12 120.4 C12 C13 C14 120.8(4) C12 C13 H13 119.6 C14 C13 H13 119.6 C9 C14 C13 120.0(4) C9 C14 H14 120.0 C13 C14 H14 120.0 C15 O9 H89 109.5 O9 C15 H151 109.5 O9 C15 H152 109.5 H151 C15 H152 109.5 O9 C15 H153 109.5 H151 C15 H153 109.5 H152 C15 H153 109.5 loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion C7 O7 C1 O1 63.5(3) C7 O7 C1 C2 -173.1(3) C5 O1 C1 O7 63.2(3) C5 O1 C1 C2 -57.8(4) O7 C1 C2 C3 -75.9(4) O1 C1 C2 C3 47.0(4) O8 N1 C3 C2 -2.8(5) O8 N1 C3 C4 179.7(3) C1 C2 C3 N1 137.9(4) C1 C2 C3 C4 -44.5(4) C8 O4 C4 C3 178.2(3) C8 O4 C4 C5 -59.8(3) N1 C3 C4 O4 -9.8(4) C2 C3 C4 O4 172.4(3) N1 C3 C4 C5 -131.8(3) C2 C3 C4 C5 50.3(4) C1 O1 C5 C6 -176.7(3) C1 O1 C5 C4 64.8(3) O4 C4 C5 O1 176.1(3) C3 C4 C5 O1 -59.9(4) O4 C4 C5 C6 57.2(4) C3 C4 C5 C6 -178.9(3) C8 O6 C6 C5 59.1(4) O1 C5 C6 O6 -174.7(3) C4 C5 C6 O6 -55.3(4) C6 O6 C8 O4 -63.1(4) C6 O6 C8 C9 176.3(3) C4 O4 C8 O6 62.8(3) C4 O4 C8 C9 -175.3(3) O6 C8 C9 C10 177.5(3) O4 C8 C9 C10 55.5(5) O6 C8 C9 C14 -4.8(5) O4 C8 C9 C14 -126.8(4) C14 C9 C10 C11 0.1(6) C8 C9 C10 C11 177.9(4) C9 C10 C11 C12 1.0(7) C10 C11 C12 C13 -1.6(7) C11 C12 C13 C14 1.1(7) C10 C9 C14 C13 -0.6(6) C8 C9 C14 C13 -178.3(4) C12 C13 C14 C9 0.0(7) loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA O8 H88 O9 . 0.84 1.80 2.641(3) 175 O9 H89 N1 2_756 0.84 2.08 2.873(4) 157