#------------------------------------------------------------------------------ #$Date: 2010-01-30 15:59:17 +0200 (Sat, 30 Jan 2010) $ #$Revision: 966 $ #$URL: file:///home/coder/svn-repositories/cod/cif/2/2216677.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2216677 loop_ _publ_author_name 'Tomura, Masaaki' 'Ono, Katsuhiko' 'Kaiden, Masanori' 'Tsukamoto, Kenichi' 'Saito, Katsuhiro' _publ_section_title ;\ 2H,10H-1,4-Dioxepino[5',6':4,5]thieno[3,2-e][1,4]\ dioxepine-5,7(3H,9H)-dione ; _journal_coeditor_code NG2356 _journal_issue 12 _journal_name_full 'Acta Crystallographica, Section E' _journal_page_first o4568 _journal_page_last o4569 _journal_volume 63 _journal_year 2007 _chemical_formula_iupac 'C10 H8 O6 S' _chemical_formula_moiety 'C10 H8 O6 S' _chemical_formula_sum 'C10 H8 O6 S' _chemical_formula_weight 256.22 _chemical_melting_point >573 _chemical_name_systematic ; 2H,10H-1,4-Dioxepino[5',6':4,5]thieno[3,2- e][1,4]dioxepine-5,7(3H,9H)-dione ; _symmetry_cell_setting orthorhombic _symmetry_space_group_name_Hall '-P 2ac 2n' _symmetry_space_group_name_H-M 'P n m a' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _cell_angle_alpha 90.00 _cell_angle_beta 90.00 _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 20.301(2) _cell_length_b 6.9037(8) _cell_length_c 7.3463(8) _cell_measurement_reflns_used 2531 _cell_measurement_temperature 296(2) _cell_measurement_theta_max 27.4835 _cell_measurement_theta_min 3.0088 _cell_volume 1029.6(2) _computing_cell_refinement ; CrystalClear (Molecular Structure Corporation & Rigaku, 2001) ; _computing_data_collection ; CrystalClear (Molecular Structure Corporation & Rigaku,2001) ; _computing_data_reduction ; TEXSAN (Molecular Structure Corporation & Rigaku, 2000) ; _computing_molecular_graphics 'PLATON (Spek, 2003)' _computing_publication_material 'SHELXL97 (Sheldrick, 1997)' _computing_structure_refinement 'SHELXL97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS97 (Sheldrick, 1997)' _diffrn_ambient_temperature 296(2) _diffrn_detector_area_resol_mean 14.6199 _diffrn_measured_fraction_theta_full 0.977 _diffrn_measured_fraction_theta_max 0.977 _diffrn_measurement_device_type 'Rigaku/MSC Mercury CCD' _diffrn_measurement_method '\f & \w scans' _diffrn_radiation_monochromator 'Graphite Monochromator' _diffrn_radiation_source 'Rotating Anode' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71070 _diffrn_reflns_av_R_equivalents 0.0378 _diffrn_reflns_av_sigmaI/netI 0.0225 _diffrn_reflns_limit_h_max 23 _diffrn_reflns_limit_h_min -26 _diffrn_reflns_limit_k_max 8 _diffrn_reflns_limit_k_min -8 _diffrn_reflns_limit_l_max 9 _diffrn_reflns_limit_l_min -6 _diffrn_reflns_number 7769 _diffrn_reflns_theta_full 27.47 _diffrn_reflns_theta_max 27.47 _diffrn_reflns_theta_min 3.42 _diffrn_standards_number 0 _exptl_absorpt_coefficient_mu 0.329 _exptl_absorpt_correction_type none _exptl_crystal_colour Colorless _exptl_crystal_density_diffrn 1.653 _exptl_crystal_density_method 'not measured' _exptl_crystal_description Prism _exptl_crystal_F_000 528 _exptl_crystal_size_max 0.25 _exptl_crystal_size_mid 0.25 _exptl_crystal_size_min 0.10 _refine_diff_density_max 0.241 _refine_diff_density_min -0.284 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.121 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 115 _refine_ls_number_reflns 1246 _refine_ls_number_restraints 39 _refine_ls_restrained_S_all 1.105 _refine_ls_R_factor_all 0.0679 _refine_ls_R_factor_gt 0.0656 _refine_ls_shift/su_max 0.003 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.1532P)^2^+1.2875P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.1493 _refine_ls_wR_factor_ref 0.1506 _reflns_number_gt 1222 _reflns_number_total 1246 _reflns_threshold_expression I>2\s(I) _[local]_cod_data_source_file ng2356.cif loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' 'x+1/2, -y+1/2, -z+1/2' '-x, y+1/2, -z' '-x+1/2, -y, z+1/2' '-x, -y, -z' '-x-1/2, y-1/2, z-1/2' 'x, -y-1/2, z' 'x-1/2, y, -z-1/2' loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' S S 0.1246 0.1234 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _atom_site_type_symbol _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_disorder_assembly _atom_site_disorder_group S S1 0.03443(5) 0.2500 0.59051(10) 0.0415(3) Uani d S 1 A . O O1 0.16771(17) 0.2500 0.7229(4) 0.0830(12) Uani d SU 1 A . O O2 0.22262(18) 0.1835(6) 0.4789(5) 0.0626(14) Uani d PU 0.50 A -1 O O3 0.12917(14) 0.2500 0.1296(3) 0.0647(9) Uani d SU 1 . . O O4 -0.10643(16) 0.2500 0.5961(4) 0.0637(8) Uani d SU 1 . . O O5 -0.13039(15) 0.2500 0.3096(4) 0.0825(12) Uani d SU 1 . . O O6 0.00129(15) 0.2500 0.0697(3) 0.0829(13) Uani d SU 1 . . C C1 0.10475(18) 0.2500 0.4587(4) 0.0393(7) Uani d SU 1 A . C C2 0.08960(18) 0.2500 0.2764(4) 0.0436(8) Uani d SU 1 . . C C3 0.02063(18) 0.2500 0.2444(4) 0.0446(8) Uani d SU 1 B . C C4 -0.01558(18) 0.2500 0.4004(4) 0.0382(7) Uani d SU 1 . . C C5 0.1665(2) 0.2500 0.5615(5) 0.0551(10) Uani d SU 1 . . C C6 0.2204(3) 0.1130(11) 0.2935(8) 0.0624(15) Uani d PU 0.50 A -1 H H6A 0.1911 0.0020 0.2890 0.075 Uiso calc PR 0.50 A -1 H H6B 0.2641 0.0684 0.2601 0.075 Uiso calc PR 0.50 A -1 C C7 0.1991(2) 0.2500 0.1616(6) 0.0687(13) Uani d SU 1 . . H H7A 0.2215 0.2234 0.0476 0.082 Uiso calc PR 0.50 A . H H7B 0.2123 0.3784 0.2011 0.082 Uiso calc PR 0.50 . . C C8 -0.08665(19) 0.2500 0.4417(5) 0.0452(8) Uani d SU 1 B . C C9 -0.1102(3) 0.1692(10) 0.1254(7) 0.0619(15) Uani d PU 0.50 B -1 H H9A -0.0861 0.0488 0.1399 0.074 Uiso calc PR 0.50 B -1 H H9B -0.1486 0.1453 0.0502 0.074 Uiso calc PR 0.50 B -1 C C10 -0.0673(3) 0.3208(10) 0.0416(7) 0.0599(18) Uani d PU 0.50 B -1 H H10A -0.0769 0.3347 -0.0871 0.072 Uiso calc PR 0.50 B -1 H H10B -0.0738 0.4449 0.1008 0.072 Uiso calc PR 0.50 B -1 loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 S1 0.0580(6) 0.0389(5) 0.0277(4) 0.000 0.0007(3) 0.000 O1 0.077(2) 0.135(3) 0.0370(14) 0.000 -0.0137(14) 0.000 O2 0.0498(19) 0.092(4) 0.0462(18) -0.0018(18) -0.0067(15) 0.0049(18) O3 0.0526(16) 0.111(3) 0.0304(12) 0.000 0.0031(11) 0.000 O4 0.0643(18) 0.082(2) 0.0452(15) 0.000 0.0140(13) 0.000 O5 0.0471(17) 0.154(4) 0.0467(16) 0.000 0.0001(13) 0.000 O6 0.0514(17) 0.168(4) 0.0289(13) 0.000 -0.0037(11) 0.000 C1 0.0520(19) 0.0342(17) 0.0317(14) 0.000 -0.0017(13) 0.000 C2 0.054(2) 0.047(2) 0.0293(15) 0.000 0.0005(13) 0.000 C3 0.050(2) 0.054(2) 0.0292(15) 0.000 -0.0043(13) 0.000 C4 0.0517(18) 0.0304(15) 0.0326(15) 0.000 -0.0003(13) 0.000 C5 0.057(2) 0.070(3) 0.0378(18) 0.000 -0.0049(16) 0.000 C6 0.046(3) 0.084(4) 0.057(3) 0.004(3) 0.004(2) -0.008(3) C7 0.051(2) 0.107(4) 0.048(2) 0.000 0.0029(18) 0.000 C8 0.052(2) 0.0413(19) 0.0425(18) 0.000 0.0015(15) 0.000 C9 0.055(3) 0.080(4) 0.051(3) 0.003(3) -0.012(2) -0.011(3) C10 0.056(3) 0.090(5) 0.034(2) 0.010(3) -0.011(2) 0.004(2) loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag S1 C1 . 1.725(4) ? S1 C4 . 1.727(3) ? O1 C5 . 1.186(4) ? O2 C6 . 1.447(6) ? O2 C5 . 1.370(5) ? O3 C2 . 1.345(4) ? O3 C7 . 1.439(5) ? O4 C8 . 1.204(4) ? O5 C8 . 1.315(5) ? O5 C9 7_565 1.520(6) no O5 C9 . 1.520(6) ? O6 C3 . 1.342(4) ? O6 C10 . 1.491(6) ? O6 C10 7_565 1.491(6) no C1 C2 . 1.375(4) ? C1 C5 . 1.463(5) ? C2 C3 . 1.420(5) ? C3 C4 . 1.361(5) ? C4 C8 . 1.474(5) ? C5 O2 7_565 1.370(5) no C6 C7 . 1.421(7) ? C6 H6A . 0.9700 no C6 H6B . 0.9700 no C7 C6 7_565 1.421(7) no C7 H7A . 0.9700 no C7 H7B . 0.9700 no C9 C10 . 1.494(8) ? C9 H9A . 0.9700 no C9 H9B . 0.9700 no C10 H10A . 0.9700 no C10 H10B . 0.9700 no loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_3 _geom_angle _geom_angle_publ_flag C1 S1 C4 . . 91.88(16) ? C6 O2 C5 . . 120.2(4) no C2 O3 C7 . . 117.3(3) no C8 O5 C9 . 7_565 118.3(3) no C8 O5 C9 . . 118.3(3) no C3 O6 C10 . . 113.9(3) no C3 O6 C10 . 7_565 113.9(3) no C2 C1 C5 . . 134.0(3) no C2 C1 S1 . . 111.2(3) ? C5 C1 S1 . . 114.8(2) no O3 C2 C1 . . 130.4(3) no O3 C2 C3 . . 117.2(3) no C1 C2 C3 . . 112.4(3) ? O6 C3 C4 . . 130.3(3) no O6 C3 C2 . . 116.5(3) no C4 C3 C2 . . 113.2(3) ? C3 C4 C8 . . 134.6(3) no C3 C4 S1 . . 111.3(3) ? C8 C4 S1 . . 114.1(2) no O1 C5 C1 . . 122.2(4) no O1 C5 O2 . 7_565 115.2(4) no C1 C5 O2 . 7_565 119.0(3) no O1 C5 O2 . . 115.2(4) no C1 C5 O2 . . 119.0(3) no O2 C6 C7 . . 115.3(5) no O2 C6 H6A . . 108.4 no C7 C6 H6A . . 108.4 no O2 C6 H6B . . 108.4 no C7 C6 H6B . . 108.4 no H6A C6 H6B . . 107.5 no C6 C7 C6 7_565 . 83.4(6) no C6 C7 O3 7_565 . 114.3(3) no C6 C7 O3 . . 114.3(3) no C6 C7 H7A 7_565 . 124.9 no C6 C7 H7A . . 108.7 no O3 C7 H7A . . 108.7 no C6 C7 H7B . . 108.7 no O3 C7 H7B . . 108.7 no H7A C7 H7B . . 107.6 no O4 C8 O5 . . 118.0(4) no O4 C8 C4 . . 121.4(3) no O5 C8 C4 . . 120.6(3) no C10 C9 O5 . . 105.5(4) no C10 C9 H9A . . 110.6 no O5 C9 H9A . . 110.6 no C10 C9 H9B . . 110.6 no O5 C9 H9B . . 110.6 no H9A C9 H9B . . 108.8 no O6 C10 C9 . . 104.9(4) no O6 C10 H10A . . 110.8 no C9 C10 H10A . . 110.8 no O6 C10 H10B . . 110.8 no C9 C10 H10B . . 110.8 no H10A C10 H10B . . 108.8 no loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion_site_symmetry_1 _geom_torsion_site_symmetry_4 _geom_torsion _geom_torsion_publ_flag C4 S1 C1 C2 . . 0.0 no C4 S1 C1 C5 . . 180.0 no C7 O3 C2 C1 . . 0.0 no C7 O3 C2 C3 . . 180.0 no C5 C1 C2 O3 . . 0.0 no S1 C1 C2 O3 . . 180.0 no C5 C1 C2 C3 . . 180.0 no S1 C1 C2 C3 . . 0.0 no C10 O6 C3 C4 . . 21.0(3) no C10 O6 C3 C4 7_565 . -21.0(3) no C10 O6 C3 C2 . . -159.0(3) no C10 O6 C3 C2 7_565 . 159.0(3) no O3 C2 C3 O6 . . 0.0 no C1 C2 C3 O6 . . 180.0 no O3 C2 C3 C4 . . 180.0 no C1 C2 C3 C4 . . 0.0 no O6 C3 C4 C8 . . 0.0 no C2 C3 C4 C8 . . 180.0 no O6 C3 C4 S1 . . 180.0 no C2 C3 C4 S1 . . 0.0 no C1 S1 C4 C3 . . 0.0 no C1 S1 C4 C8 . . 180.0 no C2 C1 C5 O1 . . 180.0 no S1 C1 C5 O1 . . 0.0 no C2 C1 C5 O2 . 7_565 22.5(2) no S1 C1 C5 O2 . 7_565 -157.5(2) no C2 C1 C5 O2 . . -22.5(2) no S1 C1 C5 O2 . . 157.5(2) no C6 O2 C5 O1 . . 158.5(4) no C6 O2 C5 C1 . . -0.5(5) no C6 O2 C5 O2 . 7_565 -101.9(4) no C5 O2 C6 C7 . . 60.1(6) no O2 C6 C7 C6 . 7_565 23.1(6) no O2 C6 C7 O3 . . -90.6(5) no C2 O3 C7 C6 . 7_565 -46.9(4) no C2 O3 C7 C6 . . 46.9(4) no C9 O5 C8 O4 7_565 . 155.4(3) no C9 O5 C8 O4 . . -155.4(3) no C9 O5 C8 C4 7_565 . -24.6(3) no C9 O5 C8 C4 . . 24.6(3) no C3 C4 C8 O4 . . 180.0 no S1 C4 C8 O4 . . 0.0 no C3 C4 C8 O5 . . 0.0 no S1 C4 C8 O5 . . 180.0 no C8 O5 C9 C10 . . -75.3(4) no C9 O5 C9 C10 7_565 . 27.0(4) no C3 O6 C10 C9 . . -68.2(4) no C10 O6 C10 C9 7_565 . 30.7(4) no O5 C9 C10 O6 . . 101.2(4) no loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_publ_flag C6 H6A O4 3_546 0.97 2.59 3.506(7) 158.0 yes C10 H10A O4 1_554 0.97 2.47 3.403(6) 160.4 yes C6 H6B O5 2 0.97 2.53 3.262(7) 131.8 yes C6 H6B O1 4_554 0.97 2.61 3.422(7) 141.1 yes _cod_database_code 2216677