#------------------------------------------------------------------------------ #$Date: 2013-12-28 15:58:47 +0200 (Sat, 28 Dec 2013) $ #$Revision: 91933 $ #$URL: file:///home/coder/svn-repositories/cod/cif/2/21/81/2218187.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2218187 loop_ _publ_author_name 'Guo, Yujing' 'Li, Lianzhi' 'Liu, Yan' 'Dong, Jianfang' 'Wang, Daqi' _publ_section_title ;Tetrakis(\m~3~-2-{[1,1-bis(hydroxymethyl)-2-oxidoethyl]iminomethyl}-6-methoxyphenolato)tetranickel(II) tetrahydrate ; _journal_coeditor_code LH2612 _journal_issue 5 _journal_name_full 'Acta Crystallographica Section E' _journal_page_first m675 _journal_page_last m676 _journal_volume 64 _journal_year 2008 _chemical_formula_iupac '[Ni4 (C12 H15 N O4)4], 4H2 O' _chemical_formula_moiety 'C48 H60 N4 Ni4 O20, 4(H2 O)' _chemical_formula_sum 'C48 H68 N4 Ni4 O24' _chemical_formula_weight 1319.90 _chemical_name_systematic ; Tetrakis(\m~3~-2-{[1,1-bis(hydroxymethyl)-2-oxidoethyl]iminomethyl}- 6-methoxyphenolato)tetranickel(II) tetrahydrate ; _space_group_IT_number 88 _symmetry_cell_setting tetragonal _symmetry_space_group_name_Hall '-I 4ad' _symmetry_space_group_name_H-M 'I 41/a :2' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 90.00 _cell_angle_beta 90.00 _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 18.754(2) _cell_length_b 18.754(2) _cell_length_c 15.4395(15) _cell_measurement_reflns_used 3768 _cell_measurement_temperature 298(2) _cell_measurement_theta_max 25.219 _cell_measurement_theta_min 2.172 _cell_volume 5430.3(10) _computing_cell_refinement 'SAINT (Siemens, 1996)' _computing_data_collection 'SMART (Siemens, 1996)' _computing_data_reduction 'SAINT (Siemens, 1996)' _computing_molecular_graphics 'SHELXTL (Sheldrick, 2008)' _computing_publication_material 'SHELXTL (Sheldrick, 2008)' _computing_structure_refinement 'SHELXL97 (Sheldrick, 2008)' _computing_structure_solution 'SHELXS97 (Sheldrick, 2008)' _diffrn_ambient_temperature 298(2) _diffrn_measured_fraction_theta_full 1.000 _diffrn_measured_fraction_theta_max 1.000 _diffrn_measurement_device_type 'Bruker SMART CCD area-detector' _diffrn_measurement_method '\f and \w' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0338 _diffrn_reflns_av_sigmaI/netI 0.0266 _diffrn_reflns_limit_h_max 22 _diffrn_reflns_limit_h_min -22 _diffrn_reflns_limit_k_max 15 _diffrn_reflns_limit_k_min -22 _diffrn_reflns_limit_l_max 18 _diffrn_reflns_limit_l_min -9 _diffrn_reflns_number 11110 _diffrn_reflns_theta_full 25.00 _diffrn_reflns_theta_max 25.00 _diffrn_reflns_theta_min 1.71 _exptl_absorpt_coefficient_mu 1.454 _exptl_absorpt_correction_T_max 0.6864 _exptl_absorpt_correction_T_min 0.6696 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details '(SADABS; Sheldrick, 1996)' _exptl_crystal_colour green _exptl_crystal_density_diffrn 1.614 _exptl_crystal_density_method 'not measured' _exptl_crystal_description block _exptl_crystal_F_000 2752 _exptl_crystal_size_max 0.30 _exptl_crystal_size_mid 0.29 _exptl_crystal_size_min 0.28 _refine_diff_density_max 1.233 _refine_diff_density_min -0.702 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.076 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 186 _refine_ls_number_reflns 2399 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.076 _refine_ls_R_factor_all 0.0880 _refine_ls_R_factor_gt 0.0655 _refine_ls_shift/su_max 0.001 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0801P)^2^+60.7787P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.1694 _refine_ls_wR_factor_ref 0.1940 _reflns_number_gt 1840 _reflns_number_total 2399 _reflns_threshold_expression I>2\s(I) _[local]_cod_data_source_file lh2612.cif _[local]_cod_data_source_block I _[local]_cod_cif_authors_sg_H-M 'I 41/a' _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Tetragonal' changed to 'tetragonal' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_enum 1527 2010-12-29 10:47:43Z saulius The following automatic conversions were performed: '_symmetry_cell_setting' value 'Tetragonal' changed to 'tetragonal' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_values 1715 2011-07-08 13:25:40Z adriana ; _cod_database_code 2218187 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x+1/2, -y, z+1/2' '-y+3/4, x+1/4, z+1/4' 'y+3/4, -x+3/4, z+3/4' 'x+1/2, y+1/2, z+1/2' '-x+1, -y+1/2, z+1' '-y+5/4, x+3/4, z+3/4' 'y+5/4, -x+5/4, z+5/4' '-x, -y, -z' 'x-1/2, y, -z-1/2' 'y-3/4, -x-1/4, -z-1/4' '-y-3/4, x-3/4, -z-3/4' '-x+1/2, -y+1/2, -z+1/2' 'x, y+1/2, -z' 'y-1/4, -x+1/4, -z+1/4' '-y-1/4, x-1/4, -z-1/4' loop_ _atom_site_type_symbol _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_disorder_assembly _atom_site_disorder_group Ni Ni1 0.40964(4) 0.72996(4) 1.05945(5) 0.0374(3) Uani d . 1 . . N N1 0.3971(4) 0.6819(3) 0.9486(4) 0.0575(16) Uani d . 1 . . O O1 0.3327(2) 0.7952(2) 1.0412(3) 0.0480(11) Uani d . 1 . . O O2 0.2316(3) 0.8868(4) 1.0480(5) 0.097(2) Uani d . 1 . . O O3 0.4952(2) 0.6720(2) 1.0675(3) 0.0435(10) Uani d . 1 . . O O4 0.3704(5) 0.5372(4) 0.9346(5) 0.079(2) Uani d P 0.791(10) A 1 H H4 0.3533 0.5023 0.9103 0.119 Uiso calc PR 0.791(10) A 1 O O4' 0.3587(16) 0.5547(15) 0.836(2) 0.079(2) Uani d P 0.209(10) A 2 H H4' 0.3562 0.5134 0.8190 0.119 Uiso calc PR 0.209(10) A 2 O O5 0.4819(5) 0.6865(5) 0.7848(5) 0.120(3) Uani d . 1 A . H H5 0.4383 0.6853 0.7893 0.181 Uiso calc R 1 . . O O6 0.3380(3) 0.6042(3) 0.0986(4) 0.0729(16) Uani d . 1 . . H H6A 0.3733 0.5978 0.1322 0.088 Uiso d R 1 . . H H6B 0.3472 0.5846 0.0503 0.088 Uiso d R 1 . . C C1 0.3427(4) 0.6889(4) 0.9010(5) 0.061(2) Uani d . 1 . . H H1 0.3392 0.6586 0.8535 0.073 Uiso calc R 1 . . C C2 0.2852(4) 0.7394(4) 0.9132(5) 0.0529(18) Uani d . 1 . . C C3 0.2839(3) 0.7900(4) 0.9815(4) 0.0476(16) Uani d . 1 . . C C4 0.2269(4) 0.8386(5) 0.9823(5) 0.067(2) Uani d . 1 . . C C5 0.1712(5) 0.8344(6) 0.9218(6) 0.078(3) Uani d . 1 . . H H5A 0.1334 0.8664 0.9245 0.094 Uiso calc R 1 . . C C6 0.1727(5) 0.7834(6) 0.8595(6) 0.078(3) Uani d . 1 . . H H6 0.1354 0.7800 0.8201 0.094 Uiso calc R 1 . . C C7 0.2279(4) 0.7377(5) 0.8544(6) 0.068(2) Uani d . 1 . . H H7 0.2281 0.7038 0.8104 0.081 Uiso calc R 1 . . C C8 0.1829(7) 0.9466(7) 1.0493(9) 0.130(5) Uani d . 1 . . H H8A 0.1797 0.9668 0.9923 0.195 Uiso calc R 1 . . H H8B 0.2001 0.9820 1.0891 0.195 Uiso calc R 1 . . H H8C 0.1366 0.9306 1.0675 0.195 Uiso calc R 1 . . C C9 0.4572(5) 0.6290(5) 0.9262(6) 0.075(3) Uani d . 1 A . C C10 0.4932(4) 0.6144(4) 1.0099(4) 0.0523(17) Uani d . 1 . . H H10A 0.4691 0.5749 1.0380 0.063 Uiso calc R 1 . . H H10B 0.5418 0.5995 0.9981 0.063 Uiso calc R 1 . . C C11 0.4273(5) 0.5654(5) 0.8832(6) 0.073(2) Uani d . 1 . . H H11A 0.4096 0.5781 0.8262 0.088 Uiso calc PR 0.791(10) A 1 H H11B 0.4642 0.5296 0.8762 0.088 Uiso calc PR 0.791(10) A 1 H H11C 0.4635 0.5509 0.8420 0.088 Uiso d PR 0.209(10) A 2 H H11D 0.4276 0.5290 0.9279 0.088 Uiso d PR 0.209(10) A 2 C C12 0.5136(5) 0.6631(6) 0.8640(6) 0.085(3) Uani d . 1 . . H H12A 0.5359 0.7033 0.8927 0.101 Uiso calc R 1 A . H H12B 0.5504 0.6283 0.8514 0.101 Uiso calc R 1 . . loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 Ni1 0.0427(5) 0.0358(5) 0.0337(5) 0.0002(3) -0.0072(3) -0.0007(3) N1 0.080(4) 0.046(3) 0.046(3) 0.015(3) -0.022(3) -0.009(3) O1 0.045(3) 0.055(3) 0.043(2) 0.008(2) -0.009(2) -0.005(2) O2 0.070(4) 0.125(6) 0.095(5) 0.048(4) -0.010(4) -0.019(4) O3 0.056(3) 0.039(2) 0.036(2) 0.010(2) -0.008(2) -0.0013(19) O4 0.094(6) 0.059(4) 0.086(5) 0.007(4) -0.005(5) -0.030(4) O4' 0.094(6) 0.059(4) 0.086(5) 0.007(4) -0.005(5) -0.030(4) O5 0.111(6) 0.189(8) 0.061(4) 0.038(6) 0.005(4) 0.011(5) O6 0.053(3) 0.096(4) 0.070(4) -0.001(3) 0.011(3) -0.003(3) C1 0.079(5) 0.056(4) 0.048(4) 0.006(4) -0.022(4) -0.007(3) C2 0.055(4) 0.059(4) 0.045(4) -0.010(3) -0.013(3) 0.007(3) C3 0.039(4) 0.059(4) 0.044(4) -0.001(3) -0.002(3) 0.014(3) C4 0.049(4) 0.093(6) 0.058(5) 0.010(4) -0.001(4) 0.002(5) C5 0.050(5) 0.110(8) 0.075(6) 0.014(5) -0.004(4) 0.010(6) C6 0.060(5) 0.106(7) 0.069(6) -0.008(5) -0.018(4) 0.007(5) C7 0.064(5) 0.081(6) 0.058(5) -0.011(4) -0.025(4) 0.005(4) C8 0.105(9) 0.148(12) 0.137(12) 0.064(9) -0.013(8) -0.026(9) C9 0.088(6) 0.076(6) 0.061(5) 0.035(5) -0.005(5) -0.016(4) C10 0.054(4) 0.060(4) 0.043(4) 0.010(3) -0.001(3) -0.013(3) C11 0.081(6) 0.076(6) 0.061(5) 0.016(5) -0.007(5) -0.031(5) C12 0.085(7) 0.104(8) 0.065(6) 0.024(6) 0.001(5) -0.002(5) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Ni Ni 0.3393 1.1124 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_3 _geom_angle _geom_angle_publ_flag O1 Ni1 O3 . . 172.2(2) y O1 Ni1 N1 . . 94.3(2) y O3 Ni1 N1 . . 84.1(2) y O1 Ni1 O3 . 15_567 94.57(19) y O3 Ni1 O3 . 15_567 88.47(19) y N1 Ni1 O3 . 15_567 166.1(2) y O1 Ni1 O3 . 6_564 94.23(17) y O3 Ni1 O3 . 6_564 79.80(17) y N1 Ni1 O3 . 6_564 117.2(2) y O3 Ni1 O3 15_567 6_564 72.63(17) y C1 N1 C9 . . 121.7(6) ? C1 N1 Ni1 . . 124.1(6) ? C9 N1 Ni1 . . 114.0(5) ? C3 O1 Ni1 . . 125.9(4) ? C4 O2 C8 . . 119.0(8) ? C10 O3 Ni1 . . 111.7(4) ? C10 O3 Ni1 . 12_768 121.9(4) ? Ni1 O3 Ni1 . 12_768 108.9(2) ? C11 O4 H4 . . 109.5 ? H4 O4 H11D . . 103.2 ? C11 O4' H4' . . 109.5 ? C12 O5 H5 . . 109.5 ? H6A O6 H6B . . 108.4 ? N1 C1 C2 . . 126.4(7) ? N1 C1 H1 . . 116.8 ? C2 C1 H1 . . 116.8 ? C7 C2 C3 . . 118.8(7) ? C7 C2 C1 . . 118.0(7) ? C3 C2 C1 . . 123.1(6) ? O1 C3 C4 . . 118.7(7) ? O1 C3 C2 . . 124.4(6) ? C4 C3 C2 . . 116.9(7) ? O2 C4 C5 . . 125.6(8) ? O2 C4 C3 . . 112.8(7) ? C5 C4 C3 . . 121.6(9) ? C6 C5 C4 . . 119.7(9) ? C6 C5 H5A . . 120.1 ? C4 C5 H5A . . 120.1 ? C7 C6 C5 . . 120.5(8) ? C7 C6 H6 . . 119.8 ? C5 C6 H6 . . 119.8 ? C6 C7 C2 . . 122.3(9) ? C6 C7 H7 . . 118.9 ? C2 C7 H7 . . 118.9 ? O2 C8 H8A . . 109.5 ? O2 C8 H8B . . 109.5 ? H8A C8 H8B . . 109.5 ? O2 C8 H8C . . 109.5 ? H8A C8 H8C . . 109.5 ? H8B C8 H8C . . 109.5 ? C11 C9 C10 . . 114.6(8) ? C11 C9 N1 . . 110.2(8) ? C10 C9 N1 . . 104.9(6) ? C11 C9 C12 . . 108.1(8) ? C10 C9 C12 . . 107.5(8) ? N1 C9 C12 . . 111.6(7) ? O3 C10 C9 . . 115.0(6) ? O3 C10 H10A . . 108.5 ? C9 C10 H10A . . 108.5 ? O3 C10 H10B . . 108.5 ? C9 C10 H10B . . 108.5 ? H10A C10 H10B . . 107.5 ? O4 C11 C9 . . 109.4(7) ? O4 C11 O4' . . 65.0(13) ? C9 C11 O4' . . 130.9(13) ? O4 C11 H11A . . 109.8 ? C9 C11 H11A . . 109.8 ? O4' C11 H11A . . 45.3 ? O4 C11 H11B . . 109.8 ? C9 C11 H11B . . 109.8 ? O4' C11 H11B . . 117.9 ? H11A C11 H11B . . 108.2 ? O4 C11 H11C . . 141.6 ? C9 C11 H11C . . 104.8 ? O4' C11 H11C . . 104.3 ? H11A C11 H11C . . 73.3 ? O4 C11 H11D . . 49.5 ? C9 C11 H11D . . 104.3 ? O4' C11 H11D . . 104.9 ? H11A C11 H11D . . 145.1 ? H11B C11 H11D . . 65.7 ? H11C C11 H11D . . 105.4 ? O5 C12 C9 . . 111.7(8) ? O5 C12 H12A . . 109.3 ? C9 C12 H12A . . 109.3 ? O5 C12 H12B . . 109.3 ? C9 C12 H12B . . 109.3 ? H12A C12 H12B . . 107.9 ? loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag Ni1 O1 . 1.912(4) y Ni1 O3 . 1.941(4) y Ni1 N1 . 1.949(6) y Ni1 O3 15_567 1.970(4) y Ni1 O3 6_564 2.565(5) y N1 C1 . 1.265(9) ? N1 C9 . 1.541(10) ? O1 C3 . 1.303(8) ? O2 C4 . 1.362(11) ? O2 C8 . 1.446(12) ? O3 C10 . 1.400(8) ? O3 Ni1 12_768 1.970(4) ? O4 C11 . 1.430(12) ? O4 H4 . 0.8200 ? O4 H11D . 1.0883 ? O4' C11 . 1.49(3) ? O4' H4' . 0.8200 ? O5 C12 . 1.429(12) ? O5 H5 . 0.8200 ? O6 H6A . 0.8500 ? O6 H6B . 0.8499 ? C1 C2 . 1.447(11) ? C1 H1 . 0.9300 ? C2 C7 . 1.408(10) ? C2 C3 . 1.419(10) ? C3 C4 . 1.405(11) ? C4 C5 . 1.403(12) ? C5 C6 . 1.357(13) ? C5 H5A . 0.9300 ? C6 C7 . 1.345(13) ? C6 H6 . 0.9300 ? C7 H7 . 0.9300 ? C8 H8A . 0.9600 ? C8 H8B . 0.9600 ? C8 H8C . 0.9600 ? C9 C11 . 1.475(13) ? C9 C10 . 1.484(11) ? C9 C12 . 1.565(14) ? C10 H10A . 0.9700 ? C10 H10B . 0.9700 ? C11 H11A . 0.9700 ? C11 H11B . 0.9700 ? C11 H11C . 0.9698 ? C11 H11D . 0.9699 ? C12 H12A . 0.9700 ? C12 H12B . 0.9700 ? loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA O5 H5 N1 . 0.82 2.58 2.988(9) 112.3 O4 H4 O6 4_455 0.82 1.94 2.714(8) 156.5 O4' H4' O6 4_455 0.82 1.96 2.68(3) 147.6 O6 H6A O1 12_767 0.85 1.95 2.803(7) 179.6 O6 H6B O4 1_554 0.85 2.04 2.892(9) 179.5 loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion C1 C2 C3 C4 176.2(7) _cod_database_fobs_code 2218187 _journal_paper_doi 10.1107/S1600536808009872