#------------------------------------------------------------------------------ #$Date: 2012-06-14 10:38:40 +0300 (Thu, 14 Jun 2012) $ #$Revision: 60003 $ #$URL: file:///home/coder/svn-repositories/cod/cif/2/23/45/2234540.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2234540 loop_ _publ_author_name 'Rodrigues, V. H.' 'Hakimi, Mohammad' 'Motieiyan, Elham' _publ_section_title ; Bis(2-aminopyridinium) 2,5-dicarboxybenzene-1,4-dicarboxylate ; _journal_coeditor_code BT5880 _journal_issue 5 _journal_name_full 'Acta Crystallographica Section E' _journal_page_first o1524 _journal_volume 68 _journal_year 2012 _chemical_formula_iupac '2C5 H7 N2 +, C10 H4 O8 2-' _chemical_formula_moiety '2(C5 H7 N2 +), C10 H4 O8 2-' _chemical_formula_sum 'C20 H18 N4 O8' _chemical_formula_weight 442.38 _chemical_name_common ; ; _chemical_name_systematic ; Bis(2-aminopyridinium) 2,5-dicarboxybenzene-1,4-dicarboxylate ; _space_group_IT_number 14 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-P 2ybc' _symmetry_space_group_name_H-M 'P 1 21/c 1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 90.00 _cell_angle_beta 99.535(2) _cell_angle_gamma 90.00 _cell_formula_units_Z 2 _cell_length_a 4.01650(10) _cell_length_b 10.8098(4) _cell_length_c 21.4036(7) _cell_measurement_reflns_used 7209 _cell_measurement_temperature 273(2) _cell_measurement_theta_max 24.9290 _cell_measurement_theta_min 2.6785 _cell_volume 916.45(5) _computing_cell_refinement 'SAINT (Bruker, 2003)' _computing_data_collection 'APEX2 (Bruker--Nonius, 2004)' _computing_data_reduction 'SAINT (Bruker, 2003)' _computing_molecular_graphics 'PLATON (Spek, 2009)' _computing_publication_material 'SHELXL97 (Sheldrick, 2008)' _computing_structure_refinement 'SHELXL97 (Sheldrick, 2008)' _computing_structure_solution 'SHELXS97 (Sheldrick, 2008)' _diffrn_ambient_temperature 273(2) _diffrn_measured_fraction_theta_full 0.990 _diffrn_measured_fraction_theta_max 0.970 _diffrn_measurement_device_type ; Bruker--Nonius APEXII CCD area-detector ; _diffrn_measurement_method '\f and \w' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0239 _diffrn_reflns_av_sigmaI/netI 0.0195 _diffrn_reflns_limit_h_max 5 _diffrn_reflns_limit_h_min -4 _diffrn_reflns_limit_k_max 14 _diffrn_reflns_limit_k_min -13 _diffrn_reflns_limit_l_max 23 _diffrn_reflns_limit_l_min -27 _diffrn_reflns_number 18838 _diffrn_reflns_theta_full 27.50 _diffrn_reflns_theta_max 28.24 _diffrn_reflns_theta_min 1.93 _exptl_absorpt_coefficient_mu 0.126 _exptl_absorpt_correction_T_max 1.000000 _exptl_absorpt_correction_T_min 0.755103 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details ; (SADABS; Sheldrick, 2003) ; _exptl_crystal_colour yellow _exptl_crystal_density_diffrn 1.603 _exptl_crystal_density_method 'not measured' _exptl_crystal_description block _exptl_crystal_F_000 460 _exptl_crystal_size_max 0.3 _exptl_crystal_size_mid 0.2 _exptl_crystal_size_min 0.15 _refine_diff_density_max 0.204 _refine_diff_density_min -0.152 _refine_ls_extinction_coef 0.014(3) _refine_ls_extinction_expression Fc^*^=kFc[1+0.001xFc^2^\l^3^/sin(2\q)]^-1/4^ _refine_ls_extinction_method 'SHELXL97 (Sheldrick, 2008)' _refine_ls_goodness_of_fit_ref 1.007 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 158 _refine_ls_number_reflns 2209 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.007 _refine_ls_R_factor_all 0.0556 _refine_ls_R_factor_gt 0.0373 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0519P)^2^+0.1584P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.0918 _refine_ls_wR_factor_ref 0.1020 _reflns_number_gt 1652 _reflns_number_total 2209 _reflns_threshold_expression I>2\s(I) _[local]_cod_data_source_file bt5880.cif _[local]_cod_data_source_block I _[local]_cod_cif_authors_sg_H-M 'P 21/c' _cod_database_code 2234540 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y+1/2, -z+1/2' '-x, -y, -z' 'x, -y-1/2, z-1/2' loop_ _atom_site_type_symbol _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_symmetry_multiplicity N N1 1.1547(3) 0.04940(11) 0.38178(5) 0.0424(3) Uani d . 1 1 H H1A 1.040(4) 0.1095(15) 0.3993(8) 0.051 Uiso d . 1 1 C C1 1.1679(3) 0.04905(12) 0.32019(6) 0.0370(3) Uani d . 1 1 N N2 1.0229(4) 0.14007(12) 0.28496(6) 0.0511(3) Uani d . 1 1 H H2A 1.021(4) 0.1363(16) 0.2461(9) 0.061 Uiso d . 1 1 H H2B 0.916(5) 0.1990(16) 0.3019(9) 0.061 Uiso d . 1 1 C C3 1.3390(4) -0.04878(13) 0.29700(7) 0.0469(4) Uani d . 1 1 H H3 1.3508 -0.0532 0.2540 0.056 Uiso calc R 1 1 C C4 1.4882(4) -0.13741(15) 0.33704(9) 0.0569(4) Uani d . 1 1 H H4 1.6042 -0.2019 0.3215 0.068 Uiso calc R 1 1 C C5 1.4684(4) -0.13228(16) 0.40058(9) 0.0587(4) Uani d . 1 1 H H5 1.5712 -0.1922 0.4285 0.070 Uiso calc R 1 1 C C6 1.2984(4) -0.03922(15) 0.42096(7) 0.0523(4) Uani d . 1 1 H H6 1.2786 -0.0356 0.4636 0.063 Uiso calc R 1 1 C C7 0.7030(3) 0.40755(11) 0.52514(6) 0.0325(3) Uani d . 1 1 H H7 0.8444 0.3440 0.5427 0.039 Uiso calc R 1 1 C C8 0.5869(3) 0.40386(11) 0.46123(5) 0.0312(3) Uani d . 1 1 C C9 0.7148(3) 0.29317(12) 0.42838(6) 0.0380(3) Uani d . 1 1 O O1 0.6529(3) 0.28618(10) 0.36938(5) 0.0588(3) Uani d . 1 1 O O2 0.8806(3) 0.21344(9) 0.45984(5) 0.0591(3) Uani d . 1 1 C C10 0.3760(3) 0.50071(11) 0.43487(5) 0.0315(3) Uani d . 1 1 C C11 0.2130(3) 0.52081(12) 0.36717(6) 0.0386(3) Uani d . 1 1 O O3 0.0283(3) 0.60888(10) 0.35332(5) 0.0571(3) Uani d . 1 1 O O4 0.2721(3) 0.44339(10) 0.32502(4) 0.0556(3) Uani d . 1 1 H H4A 0.448(5) 0.3738(17) 0.3439(8) 0.067 Uiso d . 1 1 loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 N1 0.0464(7) 0.0473(7) 0.0338(6) -0.0050(5) 0.0072(5) -0.0078(5) C1 0.0391(7) 0.0395(7) 0.0316(7) -0.0064(5) 0.0038(5) -0.0049(5) N2 0.0690(9) 0.0481(7) 0.0339(6) 0.0058(6) 0.0017(6) -0.0040(6) C3 0.0463(8) 0.0510(9) 0.0452(8) -0.0037(7) 0.0129(6) -0.0118(7) C4 0.0450(8) 0.0447(8) 0.0820(12) 0.0006(7) 0.0131(8) -0.0058(8) C5 0.0511(9) 0.0552(9) 0.0664(11) -0.0078(7) 0.0001(8) 0.0187(8) C6 0.0516(9) 0.0648(10) 0.0387(8) -0.0144(8) 0.0025(7) 0.0090(7) C7 0.0367(6) 0.0310(6) 0.0303(6) -0.0027(5) 0.0067(5) 0.0019(5) C8 0.0349(6) 0.0316(6) 0.0284(6) -0.0069(5) 0.0091(5) -0.0015(5) C9 0.0437(7) 0.0364(7) 0.0351(7) -0.0050(6) 0.0102(6) -0.0056(5) O1 0.0832(8) 0.0600(7) 0.0336(6) 0.0173(6) 0.0113(5) -0.0114(5) O2 0.0841(8) 0.0469(6) 0.0453(6) 0.0203(6) 0.0074(5) -0.0048(5) C10 0.0358(6) 0.0336(6) 0.0259(6) -0.0087(5) 0.0069(5) 0.0005(5) C11 0.0451(7) 0.0429(7) 0.0275(6) -0.0065(6) 0.0055(5) 0.0006(5) O3 0.0777(7) 0.0550(7) 0.0336(6) 0.0151(6) -0.0053(5) 0.0017(4) O4 0.0763(8) 0.0634(7) 0.0257(5) 0.0096(6) 0.0045(5) -0.0065(5) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_3 _geom_angle C1 N1 C6 . . 122.39(13) C1 N1 H1A . . 121.0(10) C6 N1 H1A . . 116.6(10) N2 C1 N1 . . 118.70(13) N2 C1 C3 . . 124.06(13) N1 C1 C3 . . 117.24(13) C1 N2 H2A . . 117.8(12) C1 N2 H2B . . 120.4(12) H2A N2 H2B . . 121.5(17) C4 C3 C1 . . 120.15(14) C4 C3 H3 . . 119.9 C1 C3 H3 . . 119.9 C3 C4 C5 . . 120.25(15) C3 C4 H4 . . 119.9 C5 C4 H4 . . 119.9 C6 C5 C4 . . 118.13(15) C6 C5 H5 . . 120.9 C4 C5 H5 . . 120.9 C5 C6 N1 . . 121.83(15) C5 C6 H6 . . 119.1 N1 C6 H6 . . 119.1 C8 C7 C10 . 3_666 124.36(12) C8 C7 H7 . . 117.8 C10 C7 H7 3_666 . 117.8 C7 C8 C10 . . 117.52(11) C7 C8 C9 . . 113.54(11) C10 C8 C9 . . 128.93(11) O2 C9 O1 . . 120.93(12) O2 C9 C8 . . 119.73(11) O1 C9 C8 . . 119.33(12) C7 C10 C8 3_666 . 118.12(11) C7 C10 C11 3_666 . 112.67(11) C8 C10 C11 . . 129.20(11) O3 C11 O4 . . 121.18(12) O3 C11 C10 . . 119.99(12) O4 C11 C10 . . 118.83(12) C11 O4 H4A . . 112.5(9) loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance N1 C1 . 1.3281(17) N1 C6 . 1.3392(19) N1 H1A . 0.913(16) C1 N2 . 1.3154(19) C1 C3 . 1.3964(19) N2 H2A . 0.831(19) N2 H2B . 0.880(19) C3 C4 . 1.357(2) C3 H3 . 0.9300 C4 C5 . 1.377(2) C4 H4 . 0.9300 C5 C6 . 1.329(2) C5 H5 . 0.9300 C6 H6 . 0.9300 C7 C8 . 1.3707(17) C7 C10 3_666 1.3809(17) C7 H7 . 0.9300 C8 C10 . 1.4049(18) C8 C9 . 1.5197(17) C9 O2 . 1.2212(16) C9 O1 . 1.2483(16) C10 C7 3_666 1.3809(17) C10 C11 . 1.5037(17) C11 O3 . 1.2133(17) C11 O4 . 1.2811(16) O4 H4A . 1.06(2) loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA N1 H1A O2 . 0.913(16) 1.904(17) 2.7852(15) 161.6(15) N1 H1A O1 . 0.913(16) 2.478(16) 3.2413(16) 141.4(13) N2 H2A O3 2_645 0.831(19) 2.125(19) 2.9520(17) 173.0(17) N2 H2B O1 . 0.880(19) 2.14(2) 2.9759(17) 157.6(16) O4 H4A O1 . 1.06(2) 1.31(2) 2.3766(15) 176.8(17) loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion_site_symmetry_1 _geom_torsion_site_symmetry_4 _geom_torsion C6 N1 C1 N2 . . -179.42(13) C6 N1 C1 C3 . . 0.14(19) N2 C1 C3 C4 . . 178.46(14) N1 C1 C3 C4 . . -1.1(2) C1 C3 C4 C5 . . 0.8(2) C3 C4 C5 C6 . . 0.5(2) C4 C5 C6 N1 . . -1.4(2) C1 N1 C6 C5 . . 1.1(2) C10 C7 C8 C10 3_666 . 0.60(19) C10 C7 C8 C9 3_666 . 179.58(11) C7 C8 C9 O2 . . 5.76(17) C10 C8 C9 O2 . . -175.39(13) C7 C8 C9 O1 . . -173.10(12) C10 C8 C9 O1 . . 5.7(2) C7 C8 C10 C7 . 3_666 -0.56(18) C9 C8 C10 C7 . 3_666 -179.36(11) C7 C8 C10 C11 . . -179.96(11) C9 C8 C10 C11 . . 1.2(2) C7 C10 C11 O3 3_666 . -1.71(17) C8 C10 C11 O3 . . 177.72(13) C7 C10 C11 O4 3_666 . 178.55(12) C8 C10 C11 O4 . . -2.01(19)