#------------------------------------------------------------------------------ #$Date: 2016-02-21 11:56:54 +0200 (Sun, 21 Feb 2016) $ #$Revision: 176809 $ #$URL: file:///home/coder/svn-repositories/cod/cif/2/30/04/2300466.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2300466 loop_ _publ_author_name 'Tan, Seng Lim' 'Ng, Seik Weng' _publ_section_title ; Does the size of a crystal matter in an X-ray crystal structure analysis of a small molecule? ; _journal_coeditor_code kk5175 _journal_issue 4 _journal_name_full 'Journal of Applied Crystallography' _journal_page_first 1443 _journal_page_last 1444 _journal_paper_doi 10.1107/S1600576714011297 _journal_volume 47 _journal_year 2014 _chemical_formula_moiety 'C7 H8 F N3 S' _chemical_formula_sum 'C7 H8 F N3 S' _chemical_formula_weight 185.22 _chemical_name_systematic ; 3-Amino-1-(4-fluorophenyl)thiourea ; _space_group_IT_number 14 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-P 2ybc' _symmetry_space_group_name_H-M 'P 1 21/c 1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 90.00 _cell_angle_beta 91.699(6) _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 11.9533(8) _cell_length_b 5.5087(4) _cell_length_c 12.4688(8) _cell_measurement_reflns_used 2061 _cell_measurement_temperature 100(2) _cell_measurement_theta_max 27.5330 _cell_measurement_theta_min 3.7260 _cell_volume 820.67(10) _computing_cell_refinement 'CrysAlis PRO (Agilent, 2014)' _computing_data_collection 'CrysAlis PRO (Agilent, 2014)' _computing_data_reduction 'CrysAlis PRO (Agilent, 2014)' _computing_molecular_graphics 'X-Seed (Barbour, 2001)' _computing_publication_material 'publCIF (Westrip, 2010)' _computing_structure_refinement 'SHELXL-97 (Sheldrick, 2008)' _computing_structure_solution 'SHELXS-97 (Sheldrick, 2008)' _diffrn_ambient_temperature 100(2) _diffrn_detector_area_resol_mean 10.4041 _diffrn_measured_fraction_theta_full 0.998 _diffrn_measured_fraction_theta_max 0.998 _diffrn_measurement_device_type 'Agilent Technologies SuperNova Dual diffractometer with Atlas detector' _diffrn_measurement_method '\w scan' _diffrn_radiation_monochromator Mirror _diffrn_radiation_source 'SuperNova (Mo) X-ray Source' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0409 _diffrn_reflns_av_sigmaI/netI 0.0480 _diffrn_reflns_limit_h_max 15 _diffrn_reflns_limit_h_min -11 _diffrn_reflns_limit_k_max 7 _diffrn_reflns_limit_k_min -7 _diffrn_reflns_limit_l_max 16 _diffrn_reflns_limit_l_min -14 _diffrn_reflns_number 5875 _diffrn_reflns_theta_full 27.58 _diffrn_reflns_theta_max 27.58 _diffrn_reflns_theta_min 3.27 _diffrn_standards_decay_% 0 _diffrn_standards_interval_count 0 _diffrn_standards_interval_time 0 _diffrn_standards_number 0 _exptl_absorpt_coefficient_mu 0.355 _exptl_absorpt_correction_T_max 0.952 _exptl_absorpt_correction_T_min 0.915 _exptl_absorpt_correction_type gaussian _exptl_absorpt_process_details 'CrysAlis PRO (Agilent, 2014)' _exptl_crystal_colour colorless _exptl_crystal_density_diffrn 1.499 _exptl_crystal_density_method 'not measured' _exptl_crystal_description prism _exptl_crystal_F_000 384 _exptl_crystal_size_max 0.30 _exptl_crystal_size_mid 0.25 _exptl_crystal_size_min 0.14 _refine_diff_density_max 0.264 _refine_diff_density_min -0.263 _refine_diff_density_rms 0.062 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.032 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 125 _refine_ls_number_reflns 1894 _refine_ls_number_restraints 4 _refine_ls_restrained_S_all 1.031 _refine_ls_R_factor_all 0.0539 _refine_ls_R_factor_gt 0.0370 _refine_ls_shift/su_max 0.001 _refine_ls_shift/su_mean 0.001 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0367P)^2^+0.3187P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.0826 _refine_ls_wR_factor_ref 0.0935 _reflns_number_gt 1475 _reflns_number_total 1894 _reflns_threshold_expression I>2\s(I) _iucr_refine_instructions_details ; TITL P21/c rem eqivR 0.13 CELL 0.71073 11.9533 5.5087 12.4688 90.000 91.699 90.000 ZERR 4 0.0008 0.0004 0.0008 0.000 0.006 0.000 LATT 1 SYMM -x, y+1/2,-z+1/2 SFAC C H N F S UNIT 28 32 12 4 4 ACTA TEMP -173 SIZE 0.3 0.25 0.15 L.S. 100 BOND $H CONF FMAP 2 PLAN -1 DFIX 0.88 0.01 N1 H11 N1 H12 N2 H2 N3 H3 WGHT 0.036700 0.318700 FVAR 8.16818 S1 5 0.095338 0.491883 0.353507 11.00000 0.02501 0.02142 = 0.01842 -0.00602 0.01017 -0.01006 F1 4 0.465455 0.754663 0.019319 11.00000 0.02668 0.02264 = 0.01769 -0.00107 0.01153 0.00061 C1 1 0.145695 0.733958 0.423479 11.00000 0.01276 0.01540 = 0.01218 0.00175 0.00049 0.00124 C2 1 0.288789 0.839467 0.293576 11.00000 0.01229 0.01446 = 0.01469 -0.00343 0.00273 -0.00340 C3 1 0.279573 1.011238 0.212991 11.00000 0.01458 0.01208 = 0.02184 -0.00219 0.00276 0.00025 AFIX 43 H3A 2 0.232207 1.147896 0.221628 11.00000 -1.20000 AFIX 0 C4 1 0.339004 0.985988 0.119301 11.00000 0.02040 0.01542 = 0.01529 0.00384 0.00166 -0.00111 AFIX 43 H4 2 0.333511 1.103505 0.063632 11.00000 -1.20000 AFIX 0 C5 1 0.406202 0.783724 0.110384 11.00000 0.01355 0.02027 = 0.01258 -0.00374 0.00458 -0.00432 C6 1 0.417315 0.608638 0.188918 11.00000 0.01116 0.01489 = 0.02015 -0.00221 0.00132 -0.00016 AFIX 43 H6 2 0.464145 0.471396 0.179533 11.00000 -1.20000 AFIX 0 C7 1 0.357968 0.638590 0.282396 11.00000 0.01569 0.01404 = 0.01526 0.00266 -0.00053 -0.00238 AFIX 43 H7 2 0.364703 0.522125 0.338406 11.00000 -1.20000 AFIX 0 N1 3 0.144632 0.998326 0.575607 11.00000 0.01809 0.01716 = 0.01424 -0.00320 0.00021 0.00137 N2 3 0.099594 0.800173 0.515758 11.00000 0.01526 0.01796 = 0.01482 -0.00269 0.00342 -0.00352 N3 3 0.230119 0.874358 0.390545 11.00000 0.01764 0.01514 = 0.01665 -0.00330 0.00544 -0.00400 H11 2 0.091112 1.106458 0.581812 11.00000 0.02221 H12 2 0.162936 0.942582 0.640649 11.00000 0.03329 H2 2 0.049444 0.707568 0.545282 11.00000 0.03205 H3 2 0.242265 1.006544 0.428735 11.00000 0.03391 HKLF 4 REM P21/c REM R1 = 0.0370 for 1475 Fo > 4sig(Fo) and 0.0539 for all 1894 data REM 125 parameters refined using 4 restraints END WGHT 0.0289 0.3003 REM Highest difference peak 0.264, deepest hole -0.263, 1-sigma level 0.062 Q1 1 0.2735 0.8954 0.2409 11.00000 0.05 0.26 ; _cod_data_source_file kk5175sup1.cif _cod_data_source_block S4 _cod_depositor_comments ; The following automatic conversions were performed: '_exptl_absorpt_correction_type' value 'Gaussian' changed to 'gaussian' according to /usr/data/users/saulius/crontab/automatic-downloads/rss-feeds/IUCr/lib/dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.2 from 2011-04-26. Automatic conversion script Id: cif_fix_values 2281 2013-09-26 08:29:07Z andrius Adding full bibliography for 2300463--2300482.cif. ; _cod_original_sg_symbol_H-M 'P 21/c' _cod_database_code 2300466 _cod_database_fobs_code 2300466 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y+1/2, -z+1/2' '-x, -y, -z' 'x, -y-1/2, z-1/2' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_symmetry_multiplicity _atom_site_calc_flag _atom_site_refinement_flags S1 S 0.09534(4) 0.49188(9) 0.35351(4) 0.02143(16) Uani 1 1 d . F1 F 0.46545(9) 0.75466(19) 0.01932(8) 0.0221(3) Uani 1 1 d . C1 C 0.14569(14) 0.7340(3) 0.42348(14) 0.0134(4) Uani 1 1 d . C2 C 0.28879(14) 0.8395(3) 0.29358(13) 0.0138(4) Uani 1 1 d . C3 C 0.27957(15) 1.0112(3) 0.21299(15) 0.0161(4) Uani 1 1 d . H3A H 0.2322 1.1479 0.2216 0.019 Uiso 1 1 calc R C4 C 0.33900(15) 0.9860(3) 0.11930(14) 0.0170(4) Uani 1 1 d . H4 H 0.3335 1.1035 0.0636 0.020 Uiso 1 1 calc R C5 C 0.40620(15) 0.7837(3) 0.11038(14) 0.0154(4) Uani 1 1 d . C6 C 0.41732(14) 0.6086(3) 0.18892(14) 0.0154(4) Uani 1 1 d . H6 H 0.4641 0.4714 0.1795 0.018 Uiso 1 1 calc R C7 C 0.35797(14) 0.6386(3) 0.28240(14) 0.0150(4) Uani 1 1 d . H7 H 0.3647 0.5221 0.3384 0.018 Uiso 1 1 calc R N1 N 0.14463(13) 0.9983(3) 0.57561(12) 0.0165(3) Uani 1 1 d D N2 N 0.09959(13) 0.8002(3) 0.51576(12) 0.0160(3) Uani 1 1 d D N3 N 0.23012(13) 0.8744(3) 0.39055(12) 0.0164(3) Uani 1 1 d D H11 H 0.0911(13) 1.106(3) 0.5818(15) 0.022(6) Uiso 1 1 d D H12 H 0.1629(18) 0.943(4) 0.6406(10) 0.033(6) Uiso 1 1 d D H2 H 0.0494(15) 0.708(3) 0.5453(16) 0.032(6) Uiso 1 1 d D H3 H 0.2423(19) 1.007(3) 0.4287(16) 0.034(7) Uiso 1 1 d D loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 S1 0.0250(3) 0.0214(3) 0.0184(3) -0.0060(2) 0.01017(19) -0.0101(2) F1 0.0267(6) 0.0226(6) 0.0177(6) -0.0011(5) 0.0115(5) 0.0006(5) C1 0.0128(9) 0.0154(9) 0.0122(8) 0.0017(7) 0.0005(6) 0.0012(7) C2 0.0123(9) 0.0145(9) 0.0147(9) -0.0034(7) 0.0027(7) -0.0034(7) C3 0.0146(9) 0.0121(9) 0.0218(9) -0.0022(8) 0.0028(7) 0.0003(7) C4 0.0204(10) 0.0154(9) 0.0153(9) 0.0038(8) 0.0017(7) -0.0011(7) C5 0.0136(9) 0.0203(10) 0.0126(8) -0.0037(7) 0.0046(7) -0.0043(7) C6 0.0112(9) 0.0149(9) 0.0202(9) -0.0022(8) 0.0013(7) -0.0002(7) C7 0.0157(9) 0.0140(9) 0.0153(9) 0.0027(8) -0.0005(7) -0.0024(7) N1 0.0181(8) 0.0172(8) 0.0142(8) -0.0032(7) 0.0002(6) 0.0014(6) N2 0.0153(8) 0.0180(8) 0.0148(8) -0.0027(6) 0.0034(6) -0.0035(6) N3 0.0176(8) 0.0151(8) 0.0167(8) -0.0033(7) 0.0054(6) -0.0040(6) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' F F 0.0171 0.0103 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' S S 0.1246 0.1234 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _exptl_crystal_face_index_h _exptl_crystal_face_index_k _exptl_crystal_face_index_l _exptl_crystal_face_perp_dist _exptl_oxdiff_crystal_face_indexfrac_h _exptl_oxdiff_crystal_face_indexfrac_k _exptl_oxdiff_crystal_face_indexfrac_l _exptl_oxdiff_crystal_face_x _exptl_oxdiff_crystal_face_y _exptl_oxdiff_crystal_face_z -17 0 1 0.1305 -16.8492 -0.0654 0.9816 -0.1149 0.6242 0.7727 1 8 4 0.1373 1.1390 7.5074 4.2892 -0.1968 -0.8173 0.5416 1 8 -3 0.1338 0.8849 7.6240 -3.2615 0.2306 -0.7806 0.5809 13 -5 0 0.1606 13.1373 -4.8510 0.3542 -0.0013 -0.0008 -1.0000 -2 -8 2 0.1105 -1.7646 -7.6840 1.8422 -0.1536 0.8265 -0.5416 1 0 -18 0.0574 0.5640 -0.0865 -17.5758 0.9969 0.0784 0.0090 0 0 18 0.0836 -0.3061 -0.0086 17.5758 -0.9965 -0.0784 -0.0286 17 0 -1 0.1349 16.8420 0.2257 -1.0175 0.1178 -0.6399 -0.7594 loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle N2 C1 N3 115.89(16) N2 C1 S1 120.48(13) N3 C1 S1 123.61(13) C3 C2 C7 120.44(16) C3 C2 N3 119.51(16) C7 C2 N3 120.01(16) C2 C3 C4 120.66(17) C2 C3 H3A 119.7 C4 C3 H3A 119.7 C5 C4 C3 117.45(17) C5 C4 H4 121.3 C3 C4 H4 121.3 F1 C5 C6 117.87(16) F1 C5 C4 118.63(16) C6 C5 C4 123.50(16) C5 C6 C7 118.11(17) C5 C6 H6 120.9 C7 C6 H6 120.9 C2 C7 C6 119.83(16) C2 C7 H7 120.1 C6 C7 H7 120.1 N2 N1 H11 107.6(14) N2 N1 H12 107.1(15) H11 N1 H12 108.3(19) C1 N2 N1 120.08(15) C1 N2 H2 120.4(14) N1 N2 H2 118.7(14) C1 N3 C2 124.93(15) C1 N3 H3 115.1(15) C2 N3 H3 119.5(15) loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance S1 C1 1.6943(18) F1 C5 1.3654(19) C1 N2 1.341(2) C1 N3 1.345(2) C2 C3 1.382(2) C2 C7 1.391(2) C2 N3 1.429(2) C3 C4 1.392(2) C3 H3A 0.9500 C4 C5 1.380(3) C4 H4 0.9500 C5 C6 1.378(3) C6 C7 1.392(2) C6 H6 0.9500 C7 H7 0.9500 N1 N2 1.419(2) N1 H11 0.879(9) N1 H12 0.888(9) N2 H2 0.876(9) N3 H3 0.880(10) loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion C7 C2 C3 C4 0.2(3) N3 C2 C3 C4 177.69(16) C2 C3 C4 C5 0.3(3) C3 C4 C5 F1 -179.96(15) C3 C4 C5 C6 -0.2(3) F1 C5 C6 C7 179.36(15) C4 C5 C6 C7 -0.4(3) C3 C2 C7 C6 -0.8(3) N3 C2 C7 C6 -178.29(16) C5 C6 C7 C2 0.9(3) N3 C1 N2 N1 -3.8(2) S1 C1 N2 N1 177.95(13) N2 C1 N3 C2 -178.45(16) S1 C1 N3 C2 -0.3(3) C3 C2 N3 C1 113.9(2) C7 C2 N3 C1 -68.6(2)