#------------------------------------------------------------------------------ #$Date: 2015-10-08 00:10:56 +0300 (Thu, 08 Oct 2015) $ #$Revision: 160960 $ #$URL: file:///home/coder/svn-repositories/cod/cif/2/30/05/2300547.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2300547 loop_ _publ_author_name 'Arakcheeva, Alla' 'Pattison, Philip' 'Bauer-Brandl, Annette' 'Birkedal, Henrik' 'Chapuis, Gervais' _publ_section_title ; Cimetidine, C10H16N6S, form C: crystal structure and modelling of polytypes using the superspace approach ; _journal_coeditor_code he5576 _journal_issue 1 _journal_name_full 'Journal of Applied Crystallography' _journal_page_first 99 _journal_paper_doi 10.1107/S0021889812048133 _journal_volume 46 _journal_year 2013 _chemical_formula_moiety 'C10 H16 N6 S1' _chemical_formula_sum 'C10 H16 N6 S' _chemical_formula_weight 252.36 _chemical_name_common Cimetidine _chemical_name_systematic ' N-Cyano-N'-methyl-N''-[2-((4-methyl-5-imidazolyl)-methylthio)ethyl]guanidine' _space_group_IT_number 13 _space_group_ssg_name X2/c(\a0\g)00 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-P 2yc (x,1/2*y,z)' _symmetry_space_group_name_H-M 'P 1 2/c 1 (a,2*b,c)' _cell_angle_alpha 90 _cell_angle_beta 74.340(19) _cell_angle_gamma 90 _cell_formula_units_Z 4 _cell_length_a 13.817(1) _cell_length_b 4.850(1) _cell_length_c 18.760(5) _cell_measurement_temperature 100 _cell_modulation_dimension 1 _cell_volume 1210.5(4) _computing_molecular_graphics PLATON _computing_structure_refinement JANA2006 _computing_structure_solution 'Superflip JANA2006' _diffrn_ambient_temperature 100 _diffrn_detector CCD _diffrn_measured_fraction_theta_full 0.98 _diffrn_measured_fraction_theta_max 0.98 _diffrn_measurement_device 'Oxford Diffraction KM6' _diffrn_measurement_device_type 'Oxford Diffraction KM6' _diffrn_measurement_method 'CCD area detector' _diffrn_radiation_monochromator Si(111) _diffrn_radiation_probe synchrotron _diffrn_radiation_source synchrotron _diffrn_radiation_type synchrotron _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0382 _diffrn_reflns_av_sigmaI/netI 0.0105 _diffrn_reflns_limit_h_max 14 _diffrn_reflns_limit_h_min -14 _diffrn_reflns_limit_index_m_1_max 3 _diffrn_reflns_limit_index_m_1_min -3 _diffrn_reflns_limit_k_max 5 _diffrn_reflns_limit_k_min -5 _diffrn_reflns_limit_l_max 20 _diffrn_reflns_limit_l_min -20 _diffrn_reflns_number 15754 _diffrn_reflns_theta_full 22.46 _diffrn_reflns_theta_max 22.46 _diffrn_reflns_theta_min 2.44 _exptl_absorpt_coefficient_mu 0.253 _exptl_absorpt_correction_type empirical _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 2.0762 _exptl_crystal_description needle _exptl_crystal_F_000 536 _exptl_crystal_size_max 0.05 _exptl_crystal_size_mid 0.02 _exptl_crystal_size_min 0.005 _refine_diff_density_max 0.41 _refine_diff_density_min -0.40 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_gt 4.16 _refine_ls_goodness_of_fit_ref 4.56 _refine_ls_hydrogen_treatment constr _refine_ls_number_constraints 0 _refine_ls_number_parameters 460 _refine_ls_number_reflns 4668 _refine_ls_number_restraints 0 _refine_ls_R_factor_all 0.0609 _refine_ls_R_factor_gt 0.0458 _refine_ls_shift/su_max 0.0030 _refine_ls_shift/su_mean 0.0009 _refine_ls_structure_factor_coef F _refine_ls_weighting_details w=1/(\s^2^(F)+0.0001F^2^) _refine_ls_weighting_scheme sigma _refine_ls_wR_factor_gt 0.0582 _refine_ls_wR_factor_ref 0.0712 _reflns_number_gt 3823 _reflns_number_total 4668 _reflns_threshold_expression I>5\s(I) _cod_data_source_file he5576sup5.cif _cod_data_source_block ISS _cod_original_cell_volume 1210.521 _cod_chemical_formula_sum_orig 'C10 H16 N6 S1' _cod_database_code 2300547 _jana_cell_commen_supercell_matrix_1_1 6 _jana_cell_commen_supercell_matrix_1_2 0 _jana_cell_commen_supercell_matrix_1_3 0 _jana_cell_commen_supercell_matrix_2_1 0 _jana_cell_commen_supercell_matrix_2_2 1 _jana_cell_commen_supercell_matrix_2_3 0 _jana_cell_commen_supercell_matrix_3_1 0 _jana_cell_commen_supercell_matrix_3_2 0 _jana_cell_commen_supercell_matrix_3_3 1 _jana_cell_commen_t_section_1 0 loop_ _space_group_symop_id _space_group_symop_operation_xyz 1 x,y,z 2 -x,y,-z+0.5 3 x,y+0.5,z 4 -x,y+0.5,-z+0.5 5 -x,-y,-z 6 x,-y,z+0.5 7 -x,-y+0.5,-z 8 x,-y+0.5,z+0.5 loop_ _space_group_symop_ssg_id _space_group_symop_ssg_operation_algebraic 1 x1,x2,x3,x4 2 -x1,x2,-x3+1/2,-x4 3 -x1,-x2,-x3,-x4 4 x1,-x2,x3+1/2,x4 5 x1,x2+1/2,x3,x4+1/2 6 -x1,x2+1/2,-x3+1/2,-x4+1/2 7 -x1,-x2+1/2,-x3,-x4+1/2 8 x1,-x2+1/2,x3+1/2,x4+1/2 loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_adp_type _atom_site_U_iso_or_equiv _atom_site_symmetry_multiplicity _atom_site_occupancy _atom_site_calc_flag S1a S 0.01833(4) 0.45700(11) -0.89044(3) Uani 0.0155(2) 8 0.5 d N1a N -0.27971(13) 0.3385(4) -0.71337(10) Uani 0.0166(6) 8 0.5 d C3a C -0.19560(15) 0.2000(5) -0.75318(12) Uani 0.0143(7) 8 0.5 d N2a N -0.24536(14) 0.5099(4) -0.82655(10) Uani 0.0165(6) 8 0.5 d C5a C -0.08943(16) 0.2337(5) -0.88666(12) Uani 0.0153(7) 8 0.5 d C2a C -0.17504(15) 0.3076(5) -0.82268(12) Uani 0.0144(7) 8 0.5 d C1a C -0.30601(16) 0.5201(5) -0.75933(12) Uani 0.0182(8) 8 0.5 d N5a N 0.33860(13) 0.0227(4) -0.94663(10) Uani 0.0172(6) 8 0.5 d N3a N 0.28760(13) 0.2715(4) -1.03364(10) Uani 0.0155(6) 8 0.5 d C6a C 0.11114(15) 0.2734(5) -0.96135(12) Uani 0.0149(7) 8 0.5 d C10a C 0.39346(16) -0.1776(5) -0.93054(12) Uani 0.0172(7) 8 0.5 d C7a C 0.21218(16) 0.4166(5) -0.97658(12) Uani 0.0156(7) 8 0.5 d C8a C 0.34592(15) 0.0745(5) -1.01851(12) Uani 0.0138(7) 8 0.5 d C4a C -0.14330(18) -0.0133(5) -0.71998(13) Uani 0.0188(8) 8 0.5 d N6a N 0.43681(15) -0.3502(5) -0.90934(11) Uani 0.0247(7) 8 0.5 d N4a N 0.40708(13) -0.0647(4) -1.07377(10) Uani 0.0170(6) 8 0.5 d C9a C 0.42004(19) -0.0006(6) -1.15098(13) Uani 0.0219(8) 8 0.5 d H1c1a H -0.362481 0.64237 -0.744587 Uani 0.0219 8 0.5 d H1n1a H -0.31044 0.313726 -0.666966 Uani 0.02 8 0.5 d H1c4a H -0.093781 0.073357 -0.700253 Uani 0.0225 8 0.5 d H2c4a H -0.191373 -0.106829 -0.681018 Uani 0.0225 8 0.5 d H3c4a H -0.111137 -0.143654 -0.757334 Uani 0.0225 8 0.5 d H1c5a H -0.109338 0.252573 -0.931567 Uani 0.0184 8 0.5 d H2c5a H -0.070743 0.045417 -0.882234 Uani 0.0184 8 0.5 d H1c6a H 0.117259 0.088038 -0.945176 Uani 0.0179 8 0.5 d H2c6a H 0.089886 0.267089 -1.005992 Uani 0.0179 8 0.5 d H1c7a H 0.205916 0.602429 -0.99232 Uani 0.0187 8 0.5 d H2c7a H 0.23328 0.423661 -0.931883 Uani 0.0187 8 0.5 d H1n3a H 0.294774 0.31596 -1.079686 Uani 0.0187 8 0.5 d H1n4a H 0.441083 -0.201539 -1.062835 Uani 0.0204 8 0.5 d H2c9a H 0.357128 -0.020488 -1.162469 Uani 0.0263 8 0.5 d H1c9a H 0.468232 -0.123659 -1.18115 Uani 0.0263 8 0.5 d H3c9a H 0.443372 0.184783 -1.160555 Uani 0.0263 8 0.5 d loop_ _atom_site_aniso_label _atom_site_aniso_type_symbol _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 S1a S 0.0136(3) 0.0157(3) 0.0164(3) 0.0026(2) -0.0024(2) -0.0036(2) N1a N 0.0153(9) 0.0230(10) 0.0106(9) -0.0011(8) -0.0017(8) -0.0022(8) C3a C 0.0128(10) 0.0146(11) 0.0162(11) -0.0033(9) -0.0049(9) -0.0027(9) N2a N 0.0153(9) 0.0185(10) 0.0151(10) 0.0029(8) -0.0032(8) -0.0033(8) C5a C 0.0170(11) 0.0150(12) 0.0142(11) 0.0020(9) -0.0044(9) -0.0014(10) C2a C 0.0147(10) 0.0143(11) 0.0150(11) -0.0020(9) -0.0055(9) -0.0026(9) C1a C 0.0159(12) 0.0204(13) 0.0184(12) 0.0021(9) -0.0046(10) -0.0041(10) N5a N 0.0166(9) 0.0192(10) 0.0149(10) 0.0065(8) -0.0028(8) 0.0000(8) N3a N 0.0132(9) 0.0201(10) 0.0122(9) 0.0047(8) -0.0015(8) 0.0017(8) C6a C 0.0156(10) 0.0153(11) 0.0139(11) 0.0032(9) -0.0041(9) -0.0009(10) C10a C 0.0154(11) 0.0236(13) 0.0101(11) -0.0011(11) 0.0009(9) -0.0004(10) C7a C 0.0168(11) 0.0162(12) 0.0152(12) 0.0040(10) -0.0065(9) -0.0010(10) C8a C 0.0096(10) 0.0169(12) 0.0139(12) -0.0012(9) -0.0016(9) 0.0003(9) C4a C 0.0197(13) 0.0214(14) 0.0167(13) -0.0006(10) -0.0075(11) 0.0023(10) N6a N 0.0261(11) 0.0304(12) 0.0160(10) 0.0088(10) -0.0032(9) 0.0029(9) N4a N 0.0158(9) 0.0195(10) 0.0153(10) 0.0065(8) -0.0034(8) 0.0015(8) C9a C 0.0214(13) 0.0289(15) 0.0153(12) 0.0089(11) -0.0046(10) -0.0019(11) H1c1a H 0.019068 0.024535 0.022062 0.002575 -0.005557 -0.004975 H1n1a H 0.018385 0.027553 0.01268 -0.00135 -0.001991 -0.002602 H1c4a H 0.023682 0.025711 0.020007 -0.000734 -0.008977 0.002739 H2c4a H 0.023682 0.025711 0.020007 -0.000734 -0.008977 0.002739 H3c4a H 0.023682 0.025711 0.020007 -0.000734 -0.008977 0.002739 H1c5a H 0.02036 0.018002 0.017031 0.002391 -0.005331 -0.001707 H2c5a H 0.02036 0.018002 0.017031 0.002391 -0.005331 -0.001707 H1c6a H 0.018752 0.018411 0.016723 0.003874 -0.004905 -0.001096 H2c6a H 0.018752 0.018411 0.016723 0.003874 -0.004905 -0.001096 H1c7a H 0.020106 0.019428 0.018186 0.004842 -0.007821 -0.001197 H2c7a H 0.020106 0.019428 0.018186 0.004842 -0.007821 -0.001197 H1n3a H 0.015831 0.024167 0.014651 0.005587 -0.00183 0.002027 H1n4a H 0.018965 0.023421 0.018315 0.007834 -0.004115 0.001847 H2c9a H 0.025685 0.034647 0.018418 0.01067 -0.005569 -0.002239 H1c9a H 0.025685 0.034647 0.018418 0.01067 -0.005569 -0.002239 H3c9a H 0.025685 0.034647 0.018418 0.01067 -0.005569 -0.002239 loop_ _atom_site_Fourier_wave_vector_seq_id _jana_atom_site_fourier_wave_vector_q1_coeff 1 1 loop_ _atom_site_occ_special_func_atom_site_label _atom_site_occ_special_func_crenel_c _atom_site_occ_special_func_crenel_w S1a 0 0.5 N1a 0 0.5 C3a 0 0.5 N2a 0 0.5 C5a 0 0.5 C2a 0 0.5 C1a 0 0.5 N5a 0 0.5 N3a 0 0.5 C6a 0 0.5 C10a 0 0.5 C7a 0 0.5 C8a 0 0.5 C4a 0 0.5 N6a 0 0.5 N4a 0 0.5 C9a 0 0.5 H1c1a 0 0.5 H1n1a 0 0.5 H1c4a 0 0.5 H2c4a 0 0.5 H3c4a 0 0.5 H1c5a 0 0.5 H2c5a 0 0.5 H1c6a 0 0.5 H2c6a 0 0.5 H1c7a 0 0.5 H2c7a 0 0.5 H1n3a 0 0.5 H1n4a 0 0.5 H2c9a 0 0.5 H1c9a 0 0.5 H3c9a 0 0.5 loop_ _atom_type_symbol _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source _atom_type_scat_Cromer_Mann_a1 _atom_type_scat_Cromer_Mann_b1 _atom_type_scat_Cromer_Mann_a2 _atom_type_scat_Cromer_Mann_b2 _atom_type_scat_Cromer_Mann_a3 _atom_type_scat_Cromer_Mann_b3 _atom_type_scat_Cromer_Mann_a4 _atom_type_scat_Cromer_Mann_b4 _atom_type_scat_Cromer_Mann_c C 0.0033 0.0016 'International Tables Vol C tables 4.2.6.8 and 6.1.1.4' 2.31 20.843901 1.02 10.2075 1.5886 0.5687 0.865 51.651199 0.2156 H 0.0000 0.0000 'International Tables Vol C tables 4.2.6.8 and 6.1.1.4' 0.493002 10.5109 0.322912 26.1257 0.140191 3.14236 0.04081 57.799702 0.003038 N 0.0061 0.0033 'International Tables Vol C tables 4.2.6.8 and 6.1.1.4' 12.2126 0.0057 3.1322 9.8933 2.0125 28.997499 1.1663 0.5826 -11.529 S 0.1246 0.1234 'International Tables Vol C tables 4.2.6.8 and 6.1.1.4' 6.9053 1.4679 5.2034 22.215099 1.4379 0.2536 1.5863 56.172001 0.8669 loop_ _cell_wave_vector_seq_id _cell_wave_vector_x _cell_wave_vector_y _cell_wave_vector_z 1 0.166667 0.000000 0.000000 loop_ _jana_atom_site_displace_legendre_atom_site_label _jana_atom_site_displace_legendre_axis _jana_atom_site_displace_legendre_param_order _jana_atom_site_displace_legendre_param_coeff S1a x 1 -0.0195 S1a y 1 0.0668 S1a z 1 -0.0075 S1a x 2 0 S1a y 2 -0.0097 S1a z 2 0.0008 N1a x 1 -0.026(7) N1a y 1 0.001(16) N1a z 1 -0.016(6) N1a x 2 -0.002(7) N1a y 2 -0.016(16) N1a z 2 0.002(6) C3a x 1 -0.023(5) C3a y 1 0.017(12) C3a z 1 -0.017(5) C3a x 2 -0.001(5) C3a y 2 -0.012(12) C3a z 2 0.001(5) N2a x 1 -0.021(3) N2a y 1 0.043(12) N2a z 1 -0.012(6) N2a x 2 -0.001(3) N2a y 2 -0.004(12) N2a z 2 0.002(6) C5a x 1 -0.0169(18) C5a y 1 0.064(5) C5a z 1 -0.014(3) C5a x 2 -0.0014(18) C5a y 2 -0.002(5) C5a z 2 0.000(3) C2a x 1 -0.020(3) C2a y 1 0.043(9) C2a z 1 -0.014(4) C2a x 2 -0.001(3) C2a y 2 -0.005(9) C2a z 2 0.001(4) C1a x 1 -0.025(5) C1a y 1 0.017(16) C1a z 1 -0.013(7) C1a x 2 -0.002(5) C1a y 2 -0.012(16) C1a z 2 0.002(7) N5a x 1 -0.013(4) N5a y 1 0.129(15) N5a z 1 -0.008(8) N5a x 2 -0.005(4) N5a y 2 -0.038(15) N5a z 2 -0.002(8) N3a x 1 -0.017(6) N3a y 1 0.105(14) N3a z 1 -0.010(6) N3a x 2 -0.002(6) N3a y 2 -0.026(14) N3a z 2 -0.002(6) C6a x 1 -0.017(3) C6a y 1 0.086(6) C6a z 1 -0.010(2) C6a x 2 -0.002(3) C6a y 2 -0.014(6) C6a z 2 -0.001(2) C10a x 1 -0.012(5) C10a y 1 0.140(18) C10a z 1 -0.005(10) C10a x 2 -0.006(5) C10a y 2 -0.046(17) C10a z 2 -0.004(10) C7a x 1 -0.019(3) C7a y 1 0.101(10) C7a z 1 -0.011(4) C7a x 2 -0.001(3) C7a y 2 -0.023(10) C7a z 2 -0.001(4) C8a x 1 -0.014(6) C8a y 1 0.116(16) C8a z 1 -0.008(8) C8a x 2 -0.004(6) C8a y 2 -0.032(16) C8a z 2 -0.002(8) C4a x 1 -0.022(7) C4a y 1 0.010(12) C4a z 1 -0.019(4) C4a x 2 0.000(7) C4a y 2 -0.016(12) C4a z 2 0.000(4) N6a x 1 -0.012(6) N6a y 1 0.15(2) N6a z 1 -0.001(11) N6a x 2 -0.007(6) N6a y 2 -0.06(2) N6a z 2 -0.006(11) N4a x 1 -0.012(8) N4a y 1 0.12(2) N4a z 1 -0.006(9) N4a x 2 -0.006(8) N4a y 2 -0.034(19) N4a z 2 -0.003(9) C9a x 1 -0.015(11) C9a y 1 0.10(2) C9a z 1 -0.007(9) C9a x 2 -0.005(11) C9a y 2 -0.03(2) C9a z 2 -0.003(9) H1c1a x 1 -0.02(10) H1c1a y 1 0.02(10) H1c1a z 1 -0.01(10) H1c1a x 2 0.00(10) H1c1a y 2 -0.01(10) H1c1a z 2 0.00(10) H1n1a x 1 -0.03(10) H1n1a y 1 0.00(10) H1n1a z 1 -0.02(10) H1n1a x 2 -0.01(10) H1n1a y 2 -0.03(10) H1n1a z 2 0.00(10) H1c4a x 1 -0.02(10) H1c4a y 1 0.01(10) H1c4a z 1 -0.02(10) H1c4a x 2 0.00(10) H1c4a y 2 -0.02(10) H1c4a z 2 0.00(10) H2c4a x 1 -0.02(10) H2c4a y 1 0.01(10) H2c4a z 1 -0.02(10) H2c4a x 2 0.00(10) H2c4a y 2 -0.03(10) H2c4a z 2 0.00(10) H3c4a x 1 -0.02(10) H3c4a y 1 0.02(10) H3c4a z 1 -0.02(10) H3c4a x 2 0.00(10) H3c4a y 2 -0.01(10) H3c4a z 2 0.00(10) H1c5a x 1 -0.02(10) H1c5a y 1 0.08(10) H1c5a z 1 -0.01(10) H1c5a x 2 0.00(10) H1c5a y 2 0.01(10) H1c5a z 2 0.00(10) H2c5a x 1 -0.02(10) H2c5a y 1 0.06(10) H2c5a z 1 -0.02(10) H2c5a x 2 0.00(10) H2c5a y 2 0.00(10) H2c5a z 2 0.00(10) H1c6a x 1 -0.01(10) H1c6a y 1 0.09(10) H1c6a z 1 -0.01(10) H1c6a x 2 0.00(10) H1c6a y 2 -0.02(10) H1c6a z 2 0.00(10) H2c6a x 1 -0.02(10) H2c6a y 1 0.08(10) H2c6a z 1 -0.01(10) H2c6a x 2 0.00(10) H2c6a y 2 -0.01(10) H2c6a z 2 0.00(10) H1c7a x 1 -0.02(10) H1c7a y 1 0.10(10) H1c7a z 1 -0.01(10) H1c7a x 2 0.00(10) H1c7a y 2 -0.02(10) H1c7a z 2 0.00(10) H2c7a x 1 -0.02(10) H2c7a y 1 0.11(10) H2c7a z 1 -0.01(10) H2c7a x 2 0.00(10) H2c7a y 2 -0.03(10) H2c7a z 2 0.00(10) H1n3a x 1 -0.02(10) H1n3a y 1 0.10(10) H1n3a z 1 -0.01(10) H1n3a x 2 0.00(10) H1n3a y 2 -0.02(10) H1n3a z 2 0.00(10) H1n4a x 1 -0.01(10) H1n4a y 1 0.13(10) H1n4a z 1 -0.01(10) H1n4a x 2 -0.01(10) H1n4a y 2 -0.04(10) H1n4a z 2 -0.01(10) H2c9a x 1 -0.01(10) H2c9a y 1 0.07(10) H2c9a z 1 -0.01(10) H2c9a x 2 0.00(10) H2c9a y 2 0.00(10) H2c9a z 2 0.00(10) H1c9a x 1 -0.01(10) H1c9a y 1 0.11(10) H1c9a z 1 -0.01(10) H1c9a x 2 -0.01(10) H1c9a y 2 -0.02(10) H1c9a z 2 -0.01(10) H3c9a x 1 -0.02(10) H3c9a y 1 0.11(10) H3c9a z 1 -0.01(10) H3c9a x 2 0.00(10) H3c9a y 2 -0.02(10) H3c9a z 2 0.00(10)