#------------------------------------------------------------------------------ #$Date: 2014-01-22 11:41:07 +0200 (Wed, 22 Jan 2014) $ #$Revision: 94195 $ #$URL: file:///home/coder/svn-repositories/cod/cif/4/02/81/4028140.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_4028140 loop_ _publ_author_name 'Jonathan T. Reeves' 'Daniel R. Fandrick' 'Zhulin Tan' 'Jinhua J. Song' 'Sonia Rodriguez' 'Bo Qu' 'Soojin Kim' 'Oliver Niemeier' 'Zhibin Li' 'Denis Byrne' 'Scot Campbell' 'Ashish Chitroda' 'Phil DeCroos' 'Thomas Fachinger' 'Victor Fuchs' 'Nina C. Gonnella' 'Nelu Grinberg' 'Nizar Haddad' 'Burkhard J\"ager' 'Heewon Lee' 'Jon C. Lorenz' 'Shengli Ma' 'Bikshandarkoil A. Narayanan' 'Larry J. Nummy' 'Ajith Premasiri' 'Frank Roschangar' 'Max Sarvestani' 'Sherry Shen' 'Earl Spinelli' 'Xiufeng Sun' 'Richard J. Varsolona' 'Nathan Yee' 'Michael Brenner' 'Chris H. Senanayake' _publ_section_title ; Development of a Large Scale Asymmetric Synthesis of the Glucocorticoid Agonist BI 653048 BS H3PO4 ; _journal_name_full 'Journal of Organic Chemistry' _journal_page_first 3616 _journal_page_last 3635 _journal_paper_doi 10.1021/jo400079z _journal_volume 78 _journal_year 2013 _chemical_formula_sum 'C23 H28 F4 N3 O8 P S' _chemical_formula_weight 613.51 _chemical_name_systematic ; ? ; _space_group_IT_number 19 _symmetry_cell_setting orthorhombic _symmetry_space_group_name_Hall 'P 2ac 2ab' _symmetry_space_group_name_H-M 'P 21 21 21' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 90.00 _cell_angle_beta 90.00 _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 8.3288(17) _cell_length_b 9.3506(19) _cell_length_c 33.517(7) _cell_measurement_temperature 293(2) _cell_volume 2610.3(9) _computing_structure_refinement 'SHELXL-97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS-97 (Sheldrick, 1990)' _diffrn_ambient_temperature 293(2) _diffrn_measured_fraction_theta_full 0.949 _diffrn_measured_fraction_theta_max 0.949 _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type CuK\a _diffrn_radiation_wavelength 1.54178 _diffrn_reflns_av_R_equivalents 0.0000 _diffrn_reflns_av_sigmaI/netI 0.0251 _diffrn_reflns_limit_h_max 9 _diffrn_reflns_limit_h_min -9 _diffrn_reflns_limit_k_max 9 _diffrn_reflns_limit_k_min -9 _diffrn_reflns_limit_l_max 38 _diffrn_reflns_limit_l_min -38 _diffrn_reflns_number 4035 _diffrn_reflns_theta_full 63.33 _diffrn_reflns_theta_max 63.33 _diffrn_reflns_theta_min 5.28 _exptl_absorpt_coefficient_mu 2.433 _exptl_crystal_density_diffrn 1.561 _exptl_crystal_F_000 1272 _refine_diff_density_max 0.244 _refine_diff_density_min -0.353 _refine_diff_density_rms 0.060 _refine_ls_abs_structure_details 'Flack H D (1983), Acta Cryst. A39, 876-881' _refine_ls_abs_structure_Flack -0.005(17) _refine_ls_extinction_coef 0.0066(3) _refine_ls_extinction_expression Fc^*^=kFc[1+0.001xFc^2^\l^3^/sin(2\q)]^-1/4^ _refine_ls_extinction_method SHELXL _refine_ls_goodness_of_fit_ref 1.107 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 368 _refine_ls_number_reflns 4035 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.107 _refine_ls_R_factor_all 0.0358 _refine_ls_R_factor_gt 0.0343 _refine_ls_shift/su_max 0.002 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0458P)^2^+1.2574P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.0802 _refine_ls_wR_factor_ref 0.0816 _reflns_number_gt 3946 _reflns_number_total 4035 _reflns_threshold_expression >2sigma(I) _[local]_cod_data_source_file jo400079z_si_002.cif _[local]_cod_data_source_block 12 _cod_database_code 4028140 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x+1/2, -y, z+1/2' '-x, y+1/2, -z+1/2' 'x+1/2, -y+1/2, -z' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_symmetry_multiplicity _atom_site_calc_flag _atom_site_refinement_flags S1 S 0.00343(7) 0.63906(7) 0.818953(16) 0.01618(17) Uani 1 1 d . F3 F -0.9904(2) 0.83616(18) 0.98269(4) 0.0295(4) Uani 1 1 d . F2 F -1.06270(18) 1.0493(2) 0.97012(4) 0.0261(4) Uani 1 1 d . P2 P 0.47691(8) 0.93309(7) 0.761169(16) 0.01425(17) Uani 1 1 d . F4 F -1.38299(19) 1.2532(2) 0.83550(5) 0.0292(4) Uani 1 1 d . O4 O 0.0079(2) 0.49915(19) 0.80119(5) 0.0215(4) Uani 1 1 d . O8 O 0.5366(2) 0.79332(19) 0.74676(5) 0.0189(4) Uani 1 1 d . O2 O -0.8792(2) 0.9275(2) 0.91181(5) 0.0172(4) Uani 1 1 d . H2 H -0.8400 0.9671 0.8923 0.026 Uiso 1 1 calc R O7 O 0.4612(2) 0.9264(2) 0.80709(5) 0.0217(4) Uani 1 1 d . H7 H 0.3988 0.9885 0.8147 0.033 Uiso 1 1 calc R F1 F -0.8802(2) 1.0099(2) 1.01433(4) 0.0305(4) Uani 1 1 d . O1 O -0.7379(2) 1.0775(2) 0.85194(5) 0.0185(4) Uani 1 1 d . O6 O 0.5968(2) 1.0503(2) 0.74872(5) 0.0190(4) Uani 1 1 d . H6 H 0.5646 1.1282 0.7566 0.029 Uiso 1 1 calc R O3 O 0.1314(2) 0.6779(2) 0.84535(5) 0.0235(5) Uani 1 1 d . C19 C -0.1794(3) 0.6600(3) 0.84473(7) 0.0141(6) Uani 1 1 d . N2 N -0.6005(3) 0.7469(2) 0.89720(6) 0.0161(5) Uani 1 1 d . H2A H -0.6978 0.7251 0.8911 0.019 Uiso 1 1 calc R C21 C -0.0095(4) 0.7645(3) 0.77960(7) 0.0207(6) Uani 1 1 d . H21A H 0.0902 0.7634 0.7646 0.025 Uiso 1 1 calc R H21B H -0.0951 0.7362 0.7616 0.025 Uiso 1 1 calc R N1 N -0.3085(2) 0.6041(2) 0.82581(6) 0.0149(5) Uani 1 1 d . C16 C -0.3322(3) 0.7644(3) 0.89612(7) 0.0156(6) Uani 1 1 d . C1 C -0.9666(3) 1.2242(3) 0.86530(7) 0.0152(6) Uani 1 1 d . C15 C -0.3913(3) 0.8407(3) 0.92957(7) 0.0179(6) Uani 1 1 d . H15 H -0.3301 0.8909 0.9481 0.021 Uiso 1 1 calc R C17 C -0.4672(3) 0.7074(3) 0.87629(7) 0.0146(5) Uani 1 1 d . C4 C -1.2641(3) 1.2857(3) 0.89822(8) 0.0243(7) Uani 1 1 d . H4 H -1.3635 1.3065 0.9095 0.029 Uiso 1 1 calc R C7 C -0.8265(3) 1.2673(3) 0.93357(8) 0.0181(6) Uani 1 1 d . O5 O 0.3081(2) 0.9752(2) 0.74585(5) 0.0198(4) Uani 1 1 d . H5 H 0.3156 1.0086 0.7233 0.030 Uiso 1 1 calc R C2 C -1.1044(3) 1.2245(3) 0.84174(8) 0.0181(6) Uani 1 1 d . H2B H -1.0973 1.2047 0.8146 0.022 Uiso 1 1 calc R C12 C -0.9351(3) 0.9692(3) 0.97843(8) 0.0199(6) Uani 1 1 d . C13 C -0.6728(3) 0.8717(3) 0.96052(7) 0.0175(6) Uani 1 1 d . H13A H -0.6145 0.9145 0.9825 0.021 Uiso 1 1 calc R H13B H -0.7256 0.7867 0.9706 0.021 Uiso 1 1 calc R C20 C -0.1825(3) 0.7390(3) 0.87927(7) 0.0161(6) Uani 1 1 d . H20 H -0.0888 0.7739 0.8908 0.019 Uiso 1 1 calc R C18 C -0.4525(3) 0.6282(3) 0.84170(7) 0.0162(6) Uani 1 1 d . H18 H -0.5437 0.5915 0.8294 0.019 Uiso 1 1 calc R C23 C -0.8154(3) 1.1877(3) 0.84330(7) 0.0163(6) Uani 1 1 d . C14 C -0.5543(3) 0.8270(3) 0.92957(7) 0.0155(6) Uani 1 1 d . C3 C -1.2503(3) 1.2541(3) 0.85865(8) 0.0203(6) Uani 1 1 d . C8 C -0.7295(3) 1.1271(3) 0.94178(7) 0.0172(6) Uani 1 1 d . H8A H -0.6524 1.1189 0.9202 0.021 Uiso 1 1 calc R H8B H -0.6677 1.1448 0.9658 0.021 Uiso 1 1 calc R N3 N -0.7745(3) 1.2737(3) 0.81412(6) 0.0200(5) Uani 1 1 d . H3A H -0.6910 1.2553 0.7999 0.024 Uiso 1 1 calc R H3B H -0.8312 1.3485 0.8092 0.024 Uiso 1 1 calc R C6 C -0.9757(3) 1.2543(3) 0.90637(7) 0.0161(6) Uani 1 1 d . C11 C -0.8037(3) 0.9784(3) 0.94681(7) 0.0159(6) Uani 1 1 d . C9 C -0.8731(3) 1.3336(4) 0.97418(8) 0.0256(7) Uani 1 1 d . H9A H -0.7786 1.3450 0.9903 0.038 Uiso 1 1 calc R H9B H -0.9476 1.2717 0.9876 0.038 Uiso 1 1 calc R H9C H -0.9221 1.4252 0.9699 0.038 Uiso 1 1 calc R C10 C -0.7098(3) 1.3744(3) 0.91478(8) 0.0240(6) Uani 1 1 d . H10A H -0.6665 1.3349 0.8906 0.036 Uiso 1 1 calc R H10B H -0.6240 1.3939 0.9331 0.036 Uiso 1 1 calc R H10C H -0.7657 1.4616 0.9088 0.036 Uiso 1 1 calc R C5 C -1.1271(3) 1.2859(3) 0.92094(8) 0.0221(7) Uani 1 1 d . H5 H -1.1365 1.3087 0.9478 0.027 Uiso 1 1 calc R C22 C -0.0411(4) 0.9143(3) 0.79421(8) 0.0268(7) Uani 1 1 d . H22A H -0.1472 0.9195 0.8053 0.040 Uiso 1 1 calc R H22B H -0.0322 0.9800 0.7723 0.040 Uiso 1 1 calc R H22C H 0.0361 0.9388 0.8144 0.040 Uiso 1 1 calc R loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 S1 0.0133(3) 0.0183(4) 0.0170(3) -0.0019(2) 0.0003(2) 0.0009(3) F3 0.0264(9) 0.0333(11) 0.0288(8) 0.0087(7) 0.0078(7) -0.0037(8) F2 0.0165(8) 0.0373(11) 0.0245(8) 0.0013(7) 0.0053(6) 0.0036(7) P2 0.0173(4) 0.0118(4) 0.0136(3) 0.0012(2) 0.0019(2) 0.0020(3) F4 0.0172(9) 0.0404(12) 0.0301(9) -0.0006(8) -0.0084(7) 0.0021(8) O4 0.0202(10) 0.0176(11) 0.0265(9) -0.0051(8) 0.0008(8) 0.0038(8) O8 0.0251(11) 0.0137(11) 0.0178(8) -0.0008(7) 0.0047(8) 0.0024(8) O2 0.0171(10) 0.0203(12) 0.0143(8) -0.0012(8) -0.0025(7) -0.0044(8) O7 0.0282(11) 0.0198(12) 0.0171(9) 0.0027(8) 0.0025(7) 0.0111(9) F1 0.0279(9) 0.0501(12) 0.0135(7) -0.0022(7) 0.0037(6) 0.0035(8) O1 0.0195(10) 0.0199(11) 0.0162(8) 0.0000(8) 0.0034(7) 0.0048(8) O6 0.0194(10) 0.0140(12) 0.0236(9) 0.0008(8) 0.0014(8) 0.0014(8) O3 0.0143(10) 0.0339(14) 0.0224(9) -0.0063(9) -0.0029(8) -0.0012(9) C19 0.0113(13) 0.0150(16) 0.0160(12) 0.0036(10) -0.0007(10) -0.0016(11) N2 0.0127(11) 0.0202(14) 0.0153(10) -0.0017(9) -0.0026(9) 0.0004(9) C21 0.0232(15) 0.0226(17) 0.0163(11) -0.0002(10) 0.0036(11) -0.0046(12) N1 0.0147(11) 0.0135(13) 0.0165(10) 0.0020(9) -0.0009(9) 0.0016(9) C16 0.0165(14) 0.0155(16) 0.0148(12) 0.0013(11) -0.0030(10) 0.0014(11) C1 0.0148(14) 0.0115(15) 0.0192(11) 0.0021(10) 0.0012(10) 0.0023(11) C15 0.0167(14) 0.0234(18) 0.0136(12) -0.0029(11) -0.0025(10) -0.0005(12) C17 0.0144(14) 0.0145(15) 0.0149(11) 0.0014(10) 0.0001(10) 0.0010(11) C4 0.0129(14) 0.0335(19) 0.0265(14) 0.0001(13) 0.0048(11) 0.0032(12) C7 0.0147(14) 0.0211(17) 0.0185(13) -0.0060(11) -0.0006(10) 0.0003(11) O5 0.0172(10) 0.0226(12) 0.0197(9) 0.0067(8) 0.0017(7) 0.0017(8) C2 0.0188(15) 0.0196(17) 0.0160(12) 0.0004(11) 0.0006(11) -0.0006(12) C12 0.0180(15) 0.0256(19) 0.0161(12) 0.0018(12) 0.0011(11) 0.0011(12) C13 0.0166(14) 0.0239(18) 0.0121(12) 0.0006(11) 0.0002(10) 0.0003(12) C20 0.0139(14) 0.0185(17) 0.0159(12) 0.0000(11) -0.0035(10) -0.0015(11) C18 0.0142(13) 0.0165(16) 0.0181(12) -0.0009(10) -0.0025(10) -0.0007(11) C23 0.0168(14) 0.0184(17) 0.0136(12) -0.0034(11) -0.0018(10) -0.0002(12) C14 0.0199(15) 0.0150(17) 0.0117(11) 0.0019(10) -0.0018(10) 0.0012(11) C3 0.0128(15) 0.0238(17) 0.0244(14) 0.0041(11) -0.0050(11) -0.0005(11) C8 0.0125(13) 0.0240(17) 0.0150(12) -0.0059(11) -0.0013(10) -0.0009(11) N3 0.0199(12) 0.0202(14) 0.0198(11) 0.0030(10) 0.0056(9) 0.0047(10) C6 0.0156(14) 0.0140(15) 0.0189(12) -0.0014(10) 0.0002(11) 0.0011(11) C11 0.0140(14) 0.0239(17) 0.0099(11) -0.0007(11) 0.0014(10) 0.0022(11) C9 0.0248(16) 0.030(2) 0.0217(14) -0.0114(13) -0.0028(12) 0.0037(13) C10 0.0199(15) 0.0175(18) 0.0344(15) -0.0035(13) -0.0033(12) -0.0020(12) C5 0.0190(15) 0.0298(19) 0.0176(13) -0.0043(12) 0.0010(11) 0.0042(13) C22 0.0322(17) 0.0249(18) 0.0233(13) 0.0036(12) 0.0014(12) -0.0016(13) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0181 0.0091 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0311 0.0180 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0492 0.0322 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' F F 0.0727 0.0534 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' P P 0.2955 0.4335 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' S S 0.3331 0.5567 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle O3 S1 O4 117.87(12) O3 S1 C19 108.18(11) O4 S1 C19 109.06(13) O3 S1 C21 109.75(14) O4 S1 C21 107.22(11) C19 S1 C21 103.86(13) O8 P2 O6 108.82(11) O8 P2 O7 108.52(10) O6 P2 O7 110.70(11) O8 P2 O5 114.95(11) O6 P2 O5 108.52(10) O7 P2 O5 105.29(10) N1 C19 C20 126.0(2) N1 C19 S1 114.47(18) C20 C19 S1 119.3(2) C17 N2 C14 109.0(2) C22 C21 S1 112.63(17) C18 N1 C19 117.6(2) C20 C16 C17 117.4(2) C20 C16 C15 135.9(3) C17 C16 C15 106.6(2) C2 C1 C6 120.6(2) C2 C1 C23 114.4(2) C6 C1 C23 124.9(2) C14 C15 C16 107.3(2) N2 C17 C18 130.4(2) N2 C17 C16 107.8(2) C18 C17 C16 121.8(2) C3 C4 C5 118.0(3) C10 C7 C9 105.0(2) C10 C7 C6 108.6(2) C9 C7 C6 110.4(2) C10 C7 C8 107.0(2) C9 C7 C8 108.1(2) C6 C7 C8 116.9(2) C3 C2 C1 119.8(2) F2 C12 F3 105.7(2) F2 C12 F1 107.5(2) F3 C12 F1 106.6(2) F2 C12 C11 113.3(2) F3 C12 C11 112.0(2) F1 C12 C11 111.3(2) C14 C13 C11 116.1(2) C19 C20 C16 116.8(2) N1 C18 C17 120.4(2) O1 C23 N3 123.0(2) O1 C23 C1 120.5(2) N3 C23 C1 116.5(2) C15 C14 N2 109.3(2) C15 C14 C13 129.2(3) N2 C14 C13 121.1(2) F4 C3 C4 119.4(2) F4 C3 C2 119.2(2) C4 C3 C2 121.4(2) C11 C8 C7 124.9(2) C5 C6 C1 115.9(2) C5 C6 C7 120.5(2) C1 C6 C7 123.3(2) O2 C11 C12 103.8(2) O2 C11 C8 113.2(2) C12 C11 C8 114.7(2) O2 C11 C13 110.0(2) C12 C11 C13 105.2(2) C8 C11 C13 109.5(2) C4 C5 C6 124.2(2) loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance S1 O3 1.4321(19) S1 O4 1.4379(19) S1 C19 1.762(3) S1 C21 1.768(3) F3 C12 1.335(3) F2 C12 1.329(3) P2 O8 1.4793(19) P2 O6 1.540(2) P2 O7 1.5460(17) P2 O5 1.5481(19) F4 C3 1.351(3) O2 C11 1.414(3) F1 C12 1.342(3) O1 C23 1.251(3) C19 N1 1.353(3) C19 C20 1.374(4) N2 C17 1.364(3) N2 C14 1.374(3) C21 C22 1.507(4) N1 C18 1.331(3) C16 C20 1.390(4) C16 C17 1.410(4) C16 C15 1.418(4) C1 C2 1.393(4) C1 C6 1.407(3) C1 C23 1.498(4) C15 C14 1.364(4) C17 C18 1.382(4) C4 C3 1.364(4) C4 C5 1.372(4) C7 C10 1.531(4) C7 C9 1.545(4) C7 C6 1.546(4) C7 C8 1.564(4) C2 C3 1.369(4) C12 C11 1.526(3) C13 C14 1.492(4) C13 C11 1.548(4) C23 N3 1.311(3) C8 C11 1.531(4) C6 C5 1.384(4)