#------------------------------------------------------------------------------ #$Date: 2020-05-23 02:17:50 +0300 (Sat, 23 May 2020) $ #$Revision: 252287 $ #$URL: file:///home/coder/svn-repositories/cod/cif/4/03/84/4038405.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_4038405 loop_ _publ_author_name 'Brittain, William David George' 'Cobb, Steven L.' _publ_section_title ; Protecting Group Controlled Remote Regioselective Electrophilic Aromatic Halogenation Reactions. ; _journal_name_full 'The Journal of organic chemistry' _journal_paper_doi 10.1021/acs.joc.9b03322 _journal_year 2020 _chemical_formula_moiety 'C15 H6 F4 I N O' _chemical_formula_sum 'C15 H6 F4 I N O' _chemical_formula_weight 419.11 _space_group_crystal_system monoclinic _space_group_IT_number 4 _space_group_name_Hall 'P 2yb' _space_group_name_H-M_alt 'P 1 21 1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary dual _audit_creation_date 2019-08-21 _audit_creation_method ; Olex2 1.2-beta (compiled 2018.05.29 svn.r3508 for OlexSys, GUI svn.r5506) ; _cell_angle_alpha 90 _cell_angle_beta 90.865(2) _cell_angle_gamma 90 _cell_formula_units_Z 2 _cell_length_a 4.6677(3) _cell_length_b 11.0185(7) _cell_length_c 13.0170(8) _cell_measurement_reflns_used 9948 _cell_measurement_temperature 120.0 _cell_measurement_theta_max 31.55 _cell_measurement_theta_min 2.42 _cell_volume 669.40(7) _computing_cell_refinement 'SAINT v8.38A (Bruker AXS, 2016)' _computing_data_collection 'APEX3 v.2017.3_0 (Bruker AXS, 2017)' _computing_data_reduction 'SAINT v8.38A (Bruker AXS, 2016)' _computing_molecular_graphics 'Olex2 (Dolomanov et al., 2009)' _computing_publication_material 'Olex2 (Dolomanov et al., 2009)' _computing_structure_refinement 'ShelXL (Sheldrick, 2015)' _computing_structure_solution 'XM (Sheldrick, 2008)' _diffrn_ambient_temperature 120.0 _diffrn_detector 'Bruker PHOTON 100 CMOS' _diffrn_detector_area_resol_mean 10.4 _diffrn_detector_type 'CMOS sensor' _diffrn_measured_fraction_theta_full 0.997 _diffrn_measured_fraction_theta_max 0.998 _diffrn_measurement_device '3-circle diffractometer' _diffrn_measurement_device_type 'Bruker D8 Venture' _diffrn_measurement_method '\f and \w scans' _diffrn_radiation_monochromator 'focusing mirrors' _diffrn_radiation_probe x-ray _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0261 _diffrn_reflns_av_unetI/netI 0.0228 _diffrn_reflns_Laue_measured_fraction_full 0.997 _diffrn_reflns_Laue_measured_fraction_max 0.998 _diffrn_reflns_limit_h_max 6 _diffrn_reflns_limit_h_min -6 _diffrn_reflns_limit_k_max 15 _diffrn_reflns_limit_k_min -15 _diffrn_reflns_limit_l_max 18 _diffrn_reflns_limit_l_min -18 _diffrn_reflns_number 14627 _diffrn_reflns_point_group_measured_fraction_full 0.995 _diffrn_reflns_point_group_measured_fraction_max 0.997 _diffrn_reflns_theta_full 25.242 _diffrn_reflns_theta_max 29.995 _diffrn_reflns_theta_min 3.130 _diffrn_source 'microfocus sealed X-ray tube' _diffrn_source_type 'Incoatec I\mS microsource' _diffrn_standards_number 0 _exptl_absorpt_coefficient_mu 2.439 _exptl_absorpt_correction_T_max 0.9042 _exptl_absorpt_correction_T_min 0.6305 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details ; SADABS-2016/2 (Bruker,2016/2) was used for absorption correction. wR2(int) was 0.1080 before and 0.0394 after correction. The Ratio of minimum to maximum transmission is 0.6973. The \l/2 correction factor is Not present. ; _exptl_crystal_colour 'clear colourless' _exptl_crystal_colour_lustre clear _exptl_crystal_colour_primary colourless _exptl_crystal_density_diffrn 2.079 _exptl_crystal_description plank _exptl_crystal_F_000 400 _exptl_crystal_size_max 0.23 _exptl_crystal_size_mid 0.1 _exptl_crystal_size_min 0.06 _refine_diff_density_max 0.585 _refine_diff_density_min -0.532 _refine_diff_density_rms 0.071 _refine_ls_abs_structure_details ; Flack x determined using 1735 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons, Flack and Wagner, Acta Cryst. B69 (2013) 249-259). ; _refine_ls_abs_structure_Flack -0.044(7) _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.048 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 199 _refine_ls_number_reflns 3908 _refine_ls_number_restraints 1 _refine_ls_restrained_S_all 1.048 _refine_ls_R_factor_all 0.0176 _refine_ls_R_factor_gt 0.0163 _refine_ls_shift/su_max 0.001 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'w=1/[\s^2^(Fo^2^)+(0.0244P)^2^] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.0397 _refine_ls_wR_factor_ref 0.0401 _reflns_Friedel_coverage 0.905 _reflns_Friedel_fraction_full 0.994 _reflns_Friedel_fraction_max 0.996 _reflns_number_gt 3752 _reflns_number_total 3908 _reflns_threshold_expression 'I > 2\s(I)' _iucr_refine_instructions_details ; TITL 19srv253 in P21 #4 REM Best SHELXD solution FINAL CC 88.62 REM Fragments: 8 5 3 2 REM reset to P21 #4 CELL 0.71073 4.6677 11.0185 13.017 90 90.8647 90 ZERR 2 0.0003 0.0007 0.0008 0 0.0022 0 LATT -1 SYMM -X,0.5+Y,-Z SFAC C H F I N O UNIT 30 12 8 2 2 2 L.S. 9 PLAN 5 SIZE 0.06 0.1 0.23 TEMP -153.15 CONF C1 C2 O1 C11 CONF C3 C2 O1 C11 CONF C12 C11 O1 C2 CONF C15 C11 O1 C2 BOND $h fmap 2 53 acta OMIT -2 60 WGHT 0.0244 FVAR 0.30143 REM REM REM I1 4 0.66971 0.17432 0.27137 11.00000 0.02330 0.01551 0.01708 = 0.00238 0.00296 -0.00112 F1 3 1.17762 0.29311 0.48962 11.00000 0.03304 0.02253 0.02353 = 0.00540 -0.00442 0.00712 F2 3 0.86552 0.36990 0.64987 11.00000 0.05726 0.03788 0.01565 = 0.00584 0.00407 0.00188 F3 3 0.37002 0.63442 0.45156 11.00000 0.02238 0.02466 0.03550 = -0.01071 0.00068 0.00638 F4 3 0.67539 0.57897 0.28448 11.00000 0.02578 0.03136 0.01734 = 0.00335 -0.00436 0.00927 O1 6 1.10949 0.39499 0.30379 11.00000 0.01494 0.02321 0.01427 = -0.00118 -0.00026 0.00313 N1 5 0.61638 0.50172 0.55036 11.00000 0.02882 0.02136 0.02149 = -0.00553 0.00429 -0.00573 C1 1 0.80926 0.30752 0.16891 11.00000 0.01582 0.01251 0.01709 = 0.00075 0.00325 0.00164 C2 1 1.00404 0.39319 0.20146 11.00000 0.01376 0.01821 0.01531 = 0.00028 0.00011 0.00242 C3 1 1.12428 0.47898 0.13467 11.00000 0.01601 0.01832 0.01963 = -0.00067 0.00125 -0.00067 AFIX 43 H3 2 1.26304 0.53542 0.15926 11.00000 -1.20000 AFIX 0 C4 1 1.03834 0.47981 0.03397 11.00000 0.01849 0.01549 0.01961 = -0.00011 0.00533 -0.00115 AFIX 43 H4 2 1.12069 0.53653 -0.01194 11.00000 -1.20000 AFIX 0 C5 1 0.73150 0.40177 -0.10725 11.00000 0.02660 0.01826 0.01493 = 0.00081 0.00335 0.00043 AFIX 43 H5 2 0.81035 0.45985 -0.15275 11.00000 -1.20000 AFIX 0 C6 1 0.52580 0.32302 -0.14248 11.00000 0.02489 0.02253 0.01533 = -0.00219 -0.00095 0.00064 AFIX 43 H6 2 0.46266 0.32659 -0.21213 11.00000 -1.20000 AFIX 0 C7 1 0.40787 0.23689 -0.07569 11.00000 0.02029 0.01918 0.02039 = -0.00546 0.00061 -0.00067 AFIX 43 H7 2 0.26365 0.18311 -0.10057 11.00000 -1.20000 AFIX 0 C8 1 0.49830 0.22927 0.02533 11.00000 0.01916 0.01289 0.01887 = -0.00259 0.00278 0.00075 AFIX 43 H8 2 0.41791 0.16980 0.06918 11.00000 -1.20000 AFIX 0 C9 1 0.71081 0.30976 0.06418 11.00000 0.01482 0.01218 0.01630 = -0.00001 0.00212 0.00276 C10 1 0.82874 0.39755 -0.00295 11.00000 0.01768 0.01589 0.01478 = -0.00039 0.00254 0.00185 C11 1 0.93418 0.43069 0.37995 11.00000 0.01576 0.01651 0.01424 = -0.00206 -0.00093 -0.00189 C12 1 0.98111 0.37860 0.47675 11.00000 0.02190 0.01691 0.01882 = 0.00018 -0.00247 0.00056 C13 1 0.81781 0.41846 0.55812 11.00000 0.03289 0.02289 0.01558 = -0.00110 0.00140 -0.00613 C14 1 0.57539 0.55016 0.45943 11.00000 0.01962 0.01637 0.02489 = -0.00870 -0.00067 -0.00017 C15 1 0.72672 0.52087 0.37272 11.00000 0.01766 0.01719 0.01700 = -0.00176 -0.00246 -0.00114 HKLF 4 END ; _cod_data_source_file jo9b03322_si_002.cif _cod_data_source_block 3f_19srv253 _cod_depositor_comments ; The following automatic conversions were performed: data item '_diffrn_radiation_probe' value 'X-ray' was changed to 'x-ray' in accordance with the /home/data/users/saulius/crontab/automatic-downloads/rss-feeds/ACS/lib/dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.2 last updated on 2011-04-26. Automatic conversion script Id: cif_fix_values 7556 2019-12-06 15:28:31Z antanas ; _cod_database_code 4038405 _shelx_shelxl_version_number 2017/1 _shelx_space_group_comment ; The symmetry employed for this shelxl refinement is uniquely defined by the following loop, which should always be used as a source of symmetry information in preference to the above space-group names. They are only intended as comments. ; _shelx_estimated_absorpt_t_max 0.867 _shelx_estimated_absorpt_t_min 0.604 _computing_bruker_data_scaling 'SADABS V2012/1 (Bruker AXS Inc.)' _olex2_refinement_description ; 1. Fixed Uiso At 1.2 times of: All C(H) groups 2.a Aromatic/amide H refined with riding coordinates: C3(H3), C4(H4), C5(H5), C6(H6), C7(H7), C8(H8) ; _olex2_submission_special_instructions 'No special instructions were received' loop_ _space_group_symop_operation_xyz 'x, y, z' '-x, y+1/2, -z' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_site_symmetry_order _atom_site_calc_flag _atom_site_refinement_flags_posn _atom_site_refinement_flags_adp _atom_site_refinement_flags_occupancy _atom_site_disorder_assembly _atom_site_disorder_group I1 I 0.66971(3) 0.17432(2) 0.27137(2) 0.01861(5) Uani 1 1 d . . . . . F1 F 1.1776(4) 0.29311(16) 0.48962(14) 0.0264(4) Uani 1 1 d . . . . . F2 F 0.8655(5) 0.3699(2) 0.64987(14) 0.0369(5) Uani 1 1 d . . . . . F3 F 0.3700(4) 0.63442(15) 0.45156(14) 0.0275(4) Uani 1 1 d . . . . . F4 F 0.6754(3) 0.57897(19) 0.28448(12) 0.0249(4) Uani 1 1 d . . . . . O1 O 1.1095(4) 0.39499(18) 0.30380(15) 0.0175(4) Uani 1 1 d . . . . . N1 N 0.6164(6) 0.5017(2) 0.55036(19) 0.0238(5) Uani 1 1 d . . . . . C1 C 0.8093(5) 0.3075(2) 0.1689(2) 0.0151(4) Uani 1 1 d . . . . . C2 C 1.0040(5) 0.3932(2) 0.20146(19) 0.0158(5) Uani 1 1 d . . . . . C3 C 1.1243(6) 0.4790(2) 0.1347(2) 0.0180(5) Uani 1 1 d . . . . . H3 H 1.263042 0.535424 0.159259 0.022 Uiso 1 1 calc R . . . . C4 C 1.0383(6) 0.4798(2) 0.0340(2) 0.0178(5) Uani 1 1 d . . . . . H4 H 1.120687 0.536527 -0.011942 0.021 Uiso 1 1 calc R . . . . C5 C 0.7315(6) 0.4018(3) -0.1073(2) 0.0199(5) Uani 1 1 d . . . . . H5 H 0.810350 0.459854 -0.152753 0.024 Uiso 1 1 calc R . . . . C6 C 0.5258(6) 0.3230(3) -0.1425(2) 0.0209(5) Uani 1 1 d . . . . . H6 H 0.462660 0.326590 -0.212135 0.025 Uiso 1 1 calc R . . . . C7 C 0.4079(6) 0.2369(3) -0.0757(2) 0.0199(5) Uani 1 1 d . . . . . H7 H 0.263650 0.183114 -0.100569 0.024 Uiso 1 1 calc R . . . . C8 C 0.4983(5) 0.2293(2) 0.0253(2) 0.0169(5) Uani 1 1 d . . . . . H8 H 0.417912 0.169801 0.069180 0.020 Uiso 1 1 calc R . . . . C9 C 0.7108(5) 0.3098(2) 0.06418(19) 0.0144(4) Uani 1 1 d . . . . . C10 C 0.8287(6) 0.3975(2) -0.0029(2) 0.0161(5) Uani 1 1 d . . . . . C11 C 0.9342(5) 0.4307(2) 0.37995(19) 0.0155(5) Uani 1 1 d . . . . . C12 C 0.9811(6) 0.3786(3) 0.4768(2) 0.0192(5) Uani 1 1 d . . . . . C13 C 0.8178(7) 0.4185(3) 0.5581(2) 0.0238(6) Uani 1 1 d . . . . . C14 C 0.5754(6) 0.5502(2) 0.4594(2) 0.0203(5) Uani 1 1 d . . . . . C15 C 0.7267(6) 0.5209(3) 0.3727(2) 0.0173(5) Uani 1 1 d . . . . . loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 I1 0.02330(7) 0.01551(7) 0.01708(7) 0.00238(9) 0.00296(5) -0.00112(10) F1 0.0330(9) 0.0225(9) 0.0235(9) 0.0054(7) -0.0044(7) 0.0071(7) F2 0.0573(13) 0.0379(11) 0.0157(9) 0.0058(8) 0.0041(8) 0.0019(10) F3 0.0224(8) 0.0247(8) 0.0355(10) -0.0107(7) 0.0007(7) 0.0064(6) F4 0.0258(9) 0.0314(10) 0.0173(8) 0.0034(7) -0.0044(7) 0.0093(7) O1 0.0149(8) 0.0232(10) 0.0143(8) -0.0012(7) -0.0003(7) 0.0031(7) N1 0.0288(13) 0.0214(12) 0.0215(12) -0.0055(9) 0.0043(10) -0.0057(10) C1 0.0158(11) 0.0125(10) 0.0171(11) 0.0008(9) 0.0033(9) 0.0016(9) C2 0.0138(10) 0.0182(12) 0.0153(12) 0.0003(9) 0.0001(9) 0.0024(9) C3 0.0160(12) 0.0183(12) 0.0196(13) -0.0007(10) 0.0013(10) -0.0007(9) C4 0.0185(12) 0.0155(12) 0.0196(13) -0.0001(9) 0.0053(10) -0.0012(10) C5 0.0266(13) 0.0183(12) 0.0149(12) 0.0008(10) 0.0034(10) 0.0004(11) C6 0.0249(13) 0.0225(13) 0.0153(12) -0.0022(10) -0.0010(10) 0.0006(11) C7 0.0203(12) 0.0192(13) 0.0204(13) -0.0055(10) 0.0006(10) -0.0007(10) C8 0.0192(12) 0.0129(11) 0.0189(12) -0.0026(9) 0.0028(9) 0.0008(10) C9 0.0148(11) 0.0122(11) 0.0163(11) 0.0000(9) 0.0021(9) 0.0028(9) C10 0.0177(11) 0.0159(12) 0.0148(12) -0.0004(9) 0.0025(9) 0.0018(10) C11 0.0158(11) 0.0165(12) 0.0142(11) -0.0021(9) -0.0009(9) -0.0019(9) C12 0.0219(12) 0.0169(12) 0.0188(12) 0.0002(10) -0.0025(10) 0.0006(10) C13 0.0329(15) 0.0229(14) 0.0156(12) -0.0011(10) 0.0014(10) -0.0061(12) C14 0.0196(12) 0.0164(12) 0.0249(13) -0.0087(10) -0.0007(10) -0.0002(10) C15 0.0177(11) 0.0172(11) 0.0170(12) -0.0018(9) -0.0025(9) -0.0011(9) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' F F 0.0171 0.0103 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' I I -0.4742 1.8119 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_3 _geom_angle_publ_flag C11 O1 C2 119.25(19) . . ? C14 N1 C13 116.6(3) . . ? C2 C1 I1 119.76(19) . . ? C2 C1 C9 118.9(2) . . ? C9 C1 I1 121.33(19) . . ? C1 C2 O1 121.3(2) . . ? C1 C2 C3 122.7(2) . . ? C3 C2 O1 115.9(2) . . ? C2 C3 H3 120.5 . . ? C4 C3 C2 118.9(2) . . ? C4 C3 H3 120.5 . . ? C3 C4 H4 119.5 . . ? C3 C4 C10 121.0(2) . . ? C10 C4 H4 119.5 . . ? C6 C5 H5 119.7 . . ? C6 C5 C10 120.7(3) . . ? C10 C5 H5 119.7 . . ? C5 C6 H6 120.0 . . ? C5 C6 C7 120.0(3) . . ? C7 C6 H6 120.0 . . ? C6 C7 H7 119.5 . . ? C8 C7 C6 121.0(3) . . ? C8 C7 H7 119.5 . . ? C7 C8 H8 119.8 . . ? C7 C8 C9 120.3(2) . . ? C9 C8 H8 119.8 . . ? C8 C9 C1 122.8(2) . . ? C8 C9 C10 118.8(2) . . ? C10 C9 C1 118.4(2) . . ? C4 C10 C5 120.8(2) . . ? C4 C10 C9 120.0(2) . . ? C9 C10 C5 119.2(2) . . ? O1 C11 C12 116.9(2) . . ? O1 C11 C15 125.9(2) . . ? C15 C11 C12 117.0(2) . . ? F1 C12 C11 120.3(2) . . ? F1 C12 C13 121.1(3) . . ? C13 C12 C11 118.5(3) . . ? F2 C13 C12 118.3(3) . . ? N1 C13 F2 117.4(3) . . ? N1 C13 C12 124.3(3) . . ? F3 C14 C15 118.4(3) . . ? N1 C14 F3 116.6(3) . . ? N1 C14 C15 125.1(3) . . ? F4 C15 C11 121.2(2) . . ? F4 C15 C14 120.3(2) . . ? C14 C15 C11 118.5(2) . . ? loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_site_symmetry_2 _geom_bond_publ_flag I1 C1 2.094(3) . ? F1 C12 1.324(3) . ? F2 C13 1.325(4) . ? F3 C14 1.337(3) . ? F4 C15 1.333(3) . ? O1 C2 1.413(3) . ? O1 C11 1.353(3) . ? N1 C13 1.316(4) . ? N1 C14 1.310(4) . ? C1 C2 1.373(4) . ? C1 C9 1.432(3) . ? C2 C3 1.407(4) . ? C3 H3 0.9500 . ? C3 C4 1.365(4) . ? C4 H4 0.9500 . ? C4 C10 1.413(4) . ? C5 H5 0.9500 . ? C5 C6 1.368(4) . ? C5 C10 1.426(4) . ? C6 H6 0.9500 . ? C6 C7 1.405(4) . ? C7 H7 0.9500 . ? C7 C8 1.378(4) . ? C8 H8 0.9500 . ? C8 C9 1.418(4) . ? C9 C10 1.420(4) . ? C11 C12 1.399(4) . ? C11 C15 1.390(4) . ? C12 C13 1.386(4) . ? C14 C15 1.379(4) . ? loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion _geom_torsion_site_symmetry_1 _geom_torsion_site_symmetry_2 _geom_torsion_site_symmetry_3 _geom_torsion_site_symmetry_4 _geom_torsion_publ_flag C1 C2 O1 C11 -71.8(3) . . . . ? C3 C2 O1 C11 112.1(3) . . . . ? C12 C11 O1 C2 149.4(2) . . . . ? C15 C11 O1 C2 -35.8(4) . . . . ?