#------------------------------------------------------------------------------ #$Date: 2016-03-21 06:59:19 +0200 (Mon, 21 Mar 2016) $ #$Revision: 178543 $ #$URL: file:///home/coder/svn-repositories/cod/cif/4/06/49/4064953.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_4064953 loop_ _publ_author_name 'Thomas, Helen R.' 'Deeth, Robert J.' 'Clarkson, Guy J.' 'Rourke, Jonathan P.' _publ_section_title ; Palladium(II) Agostic Complex: Exchange of Aryl--Pd and Alkyl--Pd Bonds ; _journal_issue 21 _journal_name_full Organometallics _journal_page_first 5641 _journal_paper_doi 10.1021/om200451v _journal_volume 30 _journal_year 2011 _chemical_formula_moiety 'C20 H22 F N O2 Pd' _chemical_formula_sum 'C20 H22 F N O2 Pd' _chemical_formula_weight 433.79 _chemical_name_systematic ; ? ; _space_group_IT_number 14 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-P 2yn' _symmetry_space_group_name_H-M 'P 1 21/n 1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 90.00 _cell_angle_beta 92.6305(15) _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 11.20067(18) _cell_length_b 14.2812(2) _cell_length_c 11.41199(18) _cell_measurement_reflns_used 10648 _cell_measurement_temperature 100(2) _cell_measurement_theta_max 30.48 _cell_measurement_theta_min 3.36 _cell_volume 1823.53(5) _computing_cell_refinement 'CrysAlis RED, Oxford Diffraction Ltd' _computing_data_collection 'CrysAlis CCD, Oxford Diffraction Ltd' _computing_data_reduction 'CrysAlis RED, Oxford Diffraction Ltd' _computing_molecular_graphics 'SHELXTL (Sheldrick, 1997)' _computing_publication_material 'SHELXTL (Sheldrick, 1997)' _computing_structure_refinement 'SHELXL-97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS-97 (Sheldrick, 1990)' _diffrn_ambient_temperature 100(2) _diffrn_detector_area_resol_mean 10.2833 _diffrn_measured_fraction_theta_full 0.993 _diffrn_measured_fraction_theta_max 0.910 _diffrn_measurement_device_type 'Oxford Diffraction Gemini R' _diffrn_measurement_method '\f & \w scans' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'Enhance (Mo) X-ray Source' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0275 _diffrn_reflns_av_sigmaI/netI 0.0286 _diffrn_reflns_limit_h_max 16 _diffrn_reflns_limit_h_min -14 _diffrn_reflns_limit_k_max 20 _diffrn_reflns_limit_k_min -18 _diffrn_reflns_limit_l_max 12 _diffrn_reflns_limit_l_min -15 _diffrn_reflns_number 17506 _diffrn_reflns_theta_full 28.50 _diffrn_reflns_theta_max 30.55 _diffrn_reflns_theta_min 3.37 _diffrn_standards_decay_% nil _exptl_absorpt_coefficient_mu 1.040 _exptl_absorpt_correction_T_max 1.00 _exptl_absorpt_correction_T_min 0.84 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details 'ABSPACK(CrysAlis, Oxford Diffraction)' _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.580 _exptl_crystal_density_method 'not measured' _exptl_crystal_description block _exptl_crystal_F_000 880 _exptl_crystal_size_max 0.40 _exptl_crystal_size_mid 0.35 _exptl_crystal_size_min 0.10 _refine_diff_density_max 0.665 _refine_diff_density_min -0.515 _refine_diff_density_rms 0.079 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.014 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 236 _refine_ls_number_reflns 5071 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.014 _refine_ls_R_factor_all 0.0303 _refine_ls_R_factor_gt 0.0243 _refine_ls_shift/su_max 0.002 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0217P)^2^+1.5172P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.0537 _refine_ls_wR_factor_ref 0.0570 _reflns_number_gt 4490 _reflns_number_total 5071 _reflns_threshold_expression >2sigma(I) _cod_data_source_file om200451v_si_004.cif _cod_data_source_block comp6 _cod_original_sg_symbol_H-M P2(1)/n _cod_database_code 4064953 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x+1/2, y+1/2, -z+1/2' '-x, -y, -z' 'x-1/2, -y-1/2, z-1/2' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_symmetry_multiplicity _atom_site_calc_flag _atom_site_refinement_flags Pd1 Pd 0.849095(11) 0.536094(8) 0.411171(11) 0.01228(4) Uani 1 1 d . N1 N 0.75971(13) 0.41206(10) 0.38054(13) 0.0146(3) Uani 1 1 d . C2 C 0.78470(16) 0.37118(13) 0.27654(16) 0.0178(3) Uani 1 1 d . C3 C 0.72923(18) 0.28872(14) 0.23935(17) 0.0239(4) Uani 1 1 d . H3A H 0.7483 0.2612 0.1668 0.029 Uiso 1 1 calc R C4 C 0.64618(19) 0.24698(14) 0.30840(18) 0.0259(4) Uani 1 1 d . H4A H 0.6054 0.1918 0.2827 0.031 Uiso 1 1 calc R C5 C 0.62360(17) 0.28673(13) 0.41520(17) 0.0218(4) Uani 1 1 d . H5A H 0.5685 0.2579 0.4648 0.026 Uiso 1 1 calc R C6 C 0.68149(16) 0.36928(12) 0.45059(15) 0.0161(3) Uani 1 1 d . C7 C 0.65959(15) 0.40702(12) 0.56856(15) 0.0150(3) Uani 1 1 d . C8 C 0.75395(16) 0.42548(12) 0.64908(15) 0.0162(3) Uani 1 1 d . H8A H 0.8340 0.4167 0.6271 0.019 Uiso 1 1 calc R C9 C 0.73164(17) 0.45667(12) 0.76123(16) 0.0181(4) Uani 1 1 d . H9A H 0.7955 0.4692 0.8167 0.022 Uiso 1 1 calc R F10 F 0.59215(11) 0.49992(9) 0.89940(10) 0.0272(3) Uani 1 1 d . C10 C 0.61459(18) 0.46902(12) 0.79003(16) 0.0193(4) Uani 1 1 d . C11 C 0.51855(17) 0.45108(13) 0.71284(17) 0.0200(4) Uani 1 1 d . H11A H 0.4388 0.4605 0.7354 0.024 Uiso 1 1 calc R C12 C 0.54194(16) 0.41896(12) 0.60161(16) 0.0184(4) Uani 1 1 d . H12A H 0.4775 0.4049 0.5474 0.022 Uiso 1 1 calc R C13 C 0.87274(16) 0.42363(13) 0.20454(16) 0.0188(4) Uani 1 1 d . C14 C 0.80142(19) 0.48875(16) 0.11945(17) 0.0273(4) Uani 1 1 d . H14A H 0.7550 0.5332 0.1644 0.041 Uiso 1 1 calc R H14B H 0.7471 0.4513 0.0686 0.041 Uiso 1 1 calc R H14C H 0.8568 0.5232 0.0713 0.041 Uiso 1 1 calc R C15 C 0.94898(19) 0.35709(15) 0.13317(18) 0.0279(4) Uani 1 1 d . H15A H 0.9855 0.3096 0.1853 0.042 Uiso 1 1 calc R H15B H 1.0118 0.3928 0.0963 0.042 Uiso 1 1 calc R H15C H 0.8982 0.3264 0.0724 0.042 Uiso 1 1 calc R C16 C 0.95232(16) 0.48082(13) 0.29119(16) 0.0159(3) Uani 1 1 d . H16A H 0.993(2) 0.5289(15) 0.251(2) 0.019 Uiso 1 1 d . H16B H 1.011(2) 0.4409(16) 0.330(2) 0.019 Uiso 1 1 d . C17 C 1.05319(18) 0.78644(13) 0.49019(19) 0.0254(4) Uani 1 1 d . H17A H 1.1301 0.7542 0.4857 0.038 Uiso 1 1 calc R H17B H 1.0544 0.8258 0.5606 0.038 Uiso 1 1 calc R H17C H 1.0393 0.8257 0.4204 0.038 Uiso 1 1 calc R C18 C 0.95457(16) 0.71514(12) 0.49612(16) 0.0166(3) Uani 1 1 d . O18 O 0.96051(11) 0.64783(8) 0.42272(11) 0.0159(2) Uani 1 1 d . C19 C 0.86695(16) 0.72877(12) 0.57710(16) 0.0182(4) Uani 1 1 d . H19A H 0.8777 0.7805 0.6288 0.022 Uiso 1 1 calc R C20 C 0.76419(16) 0.67387(12) 0.59021(15) 0.0168(3) Uani 1 1 d . O20 O 0.73404(11) 0.60292(9) 0.53015(11) 0.0175(3) Uani 1 1 d . C21 C 0.68189(18) 0.70196(14) 0.68541(18) 0.0256(4) Uani 1 1 d . H21A H 0.6110 0.6616 0.6818 0.038 Uiso 1 1 calc R H21B H 0.6574 0.7673 0.6740 0.038 Uiso 1 1 calc R H21C H 0.7238 0.6951 0.7622 0.038 Uiso 1 1 calc R loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 Pd1 0.01168(7) 0.01284(7) 0.01237(7) -0.00029(4) 0.00097(5) -0.00037(5) N1 0.0129(7) 0.0164(7) 0.0144(7) -0.0012(5) -0.0005(5) -0.0012(5) C2 0.0163(8) 0.0215(9) 0.0157(8) -0.0028(7) 0.0004(7) -0.0015(7) C3 0.0263(10) 0.0259(10) 0.0197(9) -0.0072(7) 0.0030(8) -0.0057(8) C4 0.0288(11) 0.0237(9) 0.0254(10) -0.0074(8) 0.0013(8) -0.0106(8) C5 0.0217(9) 0.0229(9) 0.0210(9) -0.0015(7) 0.0021(7) -0.0087(8) C6 0.0143(8) 0.0178(8) 0.0160(8) -0.0008(6) -0.0005(6) -0.0012(6) C7 0.0157(8) 0.0143(8) 0.0151(8) 0.0011(6) 0.0018(6) -0.0023(6) C8 0.0144(8) 0.0164(8) 0.0179(8) 0.0009(6) 0.0013(7) -0.0002(7) C9 0.0198(9) 0.0176(8) 0.0166(8) -0.0003(6) -0.0012(7) 0.0004(7) F10 0.0335(7) 0.0325(6) 0.0163(5) -0.0042(5) 0.0076(5) 0.0060(5) C10 0.0264(10) 0.0168(8) 0.0152(8) 0.0006(6) 0.0060(7) 0.0028(7) C11 0.0158(8) 0.0211(9) 0.0237(9) 0.0044(7) 0.0071(7) 0.0024(7) C12 0.0152(8) 0.0192(8) 0.0209(9) 0.0026(7) 0.0013(7) -0.0020(7) C13 0.0179(9) 0.0239(9) 0.0146(8) -0.0037(7) 0.0019(7) -0.0021(7) C14 0.0240(10) 0.0416(12) 0.0162(9) 0.0049(8) -0.0018(8) -0.0048(9) C15 0.0275(10) 0.0328(11) 0.0241(10) -0.0110(8) 0.0086(8) -0.0049(9) C16 0.0146(8) 0.0179(8) 0.0155(8) -0.0011(6) 0.0035(7) -0.0001(7) C17 0.0232(10) 0.0188(9) 0.0349(11) -0.0027(8) 0.0081(8) -0.0046(8) C18 0.0174(8) 0.0131(7) 0.0193(8) 0.0037(6) -0.0006(7) -0.0002(6) O18 0.0151(6) 0.0140(6) 0.0186(6) -0.0002(5) 0.0023(5) -0.0014(5) C19 0.0200(9) 0.0135(8) 0.0214(9) -0.0030(6) 0.0030(7) -0.0021(7) C20 0.0168(8) 0.0166(8) 0.0172(8) 0.0012(6) 0.0017(7) 0.0016(7) O20 0.0153(6) 0.0167(6) 0.0207(6) -0.0039(5) 0.0040(5) -0.0011(5) C21 0.0230(10) 0.0266(10) 0.0282(10) -0.0084(8) 0.0114(8) -0.0030(8) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' F F 0.0171 0.0103 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Pd Pd -0.9988 1.0072 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle C16 Pd1 O18 88.95(6) C16 Pd1 N1 80.53(7) O18 Pd1 N1 169.36(5) C16 Pd1 O20 175.70(6) O18 Pd1 O20 89.69(5) N1 Pd1 O20 100.92(5) C6 N1 C2 118.92(15) C6 N1 Pd1 127.56(12) C2 N1 Pd1 113.52(12) N1 C2 C3 121.50(17) N1 C2 C13 115.23(15) C3 C2 C13 123.24(16) C4 C3 C2 119.67(17) C4 C3 H3A 120.2 C2 C3 H3A 120.2 C5 C4 C3 118.83(17) C5 C4 H4A 120.6 C3 C4 H4A 120.6 C4 C5 C6 120.13(18) C4 C5 H5A 119.9 C6 C5 H5A 119.9 N1 C6 C5 120.88(16) N1 C6 C7 120.64(15) C5 C6 C7 118.43(16) C8 C7 C12 119.66(16) C8 C7 C6 121.06(16) C12 C7 C6 119.16(15) C9 C8 C7 120.35(17) C9 C8 H8A 119.8 C7 C8 H8A 119.8 C10 C9 C8 118.33(17) C10 C9 H9A 120.8 C8 C9 H9A 120.8 F10 C10 C9 118.63(17) F10 C10 C11 118.32(17) C9 C10 C11 123.05(17) C10 C11 C12 118.08(17) C10 C11 H11A 121.0 C12 C11 H11A 121.0 C11 C12 C7 120.51(17) C11 C12 H12A 119.7 C7 C12 H12A 119.7 C2 C13 C16 106.71(14) C2 C13 C15 111.97(16) C16 C13 C15 110.49(15) C2 C13 C14 108.03(15) C16 C13 C14 110.71(16) C15 C13 C14 108.90(16) C13 C14 H14A 109.5 C13 C14 H14B 109.5 H14A C14 H14B 109.5 C13 C14 H14C 109.5 H14A C14 H14C 109.5 H14B C14 H14C 109.5 C13 C15 H15A 109.5 C13 C15 H15B 109.5 H15A C15 H15B 109.5 C13 C15 H15C 109.5 H15A C15 H15C 109.5 H15B C15 H15C 109.5 C13 C16 Pd1 108.35(12) C13 C16 H16A 110.5(14) Pd1 C16 H16A 110.5(14) C13 C16 H16B 110.2(13) Pd1 C16 H16B 108.6(14) H16A C16 H16B 108.7(19) C18 C17 H17A 109.5 C18 C17 H17B 109.5 H17A C17 H17B 109.5 C18 C17 H17C 109.5 H17A C17 H17C 109.5 H17B C17 H17C 109.5 O18 C18 C19 126.82(16) O18 C18 C17 114.74(16) C19 C18 C17 118.44(16) C18 O18 Pd1 125.75(11) C18 C19 C20 126.73(17) C18 C19 H19A 116.6 C20 C19 H19A 116.6 O20 C20 C19 126.18(17) O20 C20 C21 116.57(16) C19 C20 C21 117.25(16) C20 O20 Pd1 123.34(12) C20 C21 H21A 109.5 C20 C21 H21B 109.5 H21A C21 H21B 109.5 C20 C21 H21C 109.5 H21A C21 H21C 109.5 H21B C21 H21C 109.5 loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance Pd1 C16 1.9950(18) Pd1 O18 2.0263(12) Pd1 N1 2.0567(14) Pd1 O20 2.1390(12) N1 C6 1.358(2) N1 C2 1.363(2) C2 C3 1.389(2) C2 C13 1.511(3) C3 C4 1.382(3) C3 H3A 0.9500 C4 C5 1.378(3) C4 H4A 0.9500 C5 C6 1.396(2) C5 H5A 0.9500 C6 C7 1.481(2) C7 C8 1.394(2) C7 C12 1.398(2) C8 C9 1.389(2) C8 H8A 0.9500 C9 C10 1.378(3) C9 H9A 0.9500 F10 C10 1.358(2) C10 C11 1.383(3) C11 C12 1.386(3) C11 H11A 0.9500 C12 H12A 0.9500 C13 C16 1.536(2) C13 C15 1.536(3) C13 C14 1.541(3) C14 H14A 0.9800 C14 H14B 0.9800 C14 H14C 0.9800 C15 H15A 0.9800 C15 H15B 0.9800 C15 H15C 0.9800 C16 H16A 0.95(2) C16 H16B 0.96(2) C17 C18 1.506(3) C17 H17A 0.9800 C17 H17B 0.9800 C17 H17C 0.9800 C18 O18 1.279(2) C18 C19 1.392(3) C19 C20 1.406(2) C19 H19A 0.9500 C20 O20 1.261(2) C20 C21 1.511(3) C21 H21A 0.9800 C21 H21B 0.9800 C21 H21C 0.9800 loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_site_symmetry_A C4 H4A O18 0.95 2.51 3.178(2) 127.8 2_645 C8 H8A O18 0.95 2.57 3.498(2) 166.5 3_766 C12 H12A O20 0.95 2.49 3.389(2) 157.2 3_666