#------------------------------------------------------------------------------ #$Date: 2016-03-22 11:00:39 +0200 (Tue, 22 Mar 2016) $ #$Revision: 178881 $ #$URL: file:///home/coder/svn-repositories/cod/cif/4/11/10/4111001.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_4111001 loop_ _publ_author_name 'Natalie E. Mansfield' 'Joanna Grundy' 'Martyn P. Coles' 'Anthony G. Avent' 'Peter B. Hitchcock' _publ_section_title ; A Conformational Study of Phospha(III)- and Phospha(V)-guanidine Compounds ; _journal_name_full 'Journal of the American Chemical Society' _journal_page_first 13879 _journal_page_last 13893 _journal_paper_doi 10.1021/ja064212t _journal_volume 128 _journal_year 2006 _chemical_compound_source 'synthesis as described' _chemical_formula_moiety 'C25 H33 N2 P Se' _chemical_formula_sum 'C25 H33 N2 P Se' _chemical_formula_weight 471.46 _chemical_name_common '[SePPh2C(NHC6H11)(NC6H11)]' _chemical_name_systematic ; ? ; _space_group_IT_number 2 _symmetry_cell_setting triclinic _symmetry_Int_Tables_number 2 _symmetry_space_group_name_Hall '-P 1' _symmetry_space_group_name_H-M 'P -1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_conform_dict_location ftp://ftp.iucr.org/pub/cif_core.dic _audit_conform_dict_name cif_core.dic _audit_conform_dict_version 2.2 _audit_creation_date 2002-10-29T10:28:23-00:00 _audit_creation_method 'WinGX routine CIF_UPDATE' _cell_angle_alpha 82.172(1) _cell_angle_beta 82.934(1) _cell_angle_gamma 69.345(1) _cell_formula_units_Z 2 _cell_length_a 8.8687(1) _cell_length_b 9.6892(1) _cell_length_c 14.9910(2) _cell_measurement_reflns_used 8908 _cell_measurement_temperature 223(2) _cell_measurement_theta_max 27.878 _cell_measurement_theta_min 3.705 _cell_measurement_wavelength 0.71073 _cell_volume 1190.24(3) _computing_cell_refinement 'HKL Scalepack (Otwinowski & Minor 1997)' _computing_data_collection 'Collect (Nonius BV, 1997-2000)' _computing_data_reduction 'HKL Denzo and Scalepack (Otwinowski & Minor 1997)' _computing_molecular_graphics 'Ortep-3 for Windows (Farrugia, 1997)' _computing_publication_material 'WinGX publication routines (Farrugia, 1999)' _computing_structure_refinement 'SHELXL-97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS-97 (Sheldrick, 1997)' _diffrn_ambient_temperature 173(2) _diffrn_measured_fraction_theta_full 0.987 _diffrn_measured_fraction_theta_max 0.987 _diffrn_measurement_device '95mm CCD camera on \k-goniostat' _diffrn_measurement_device_type KappaCCD _diffrn_measurement_method CCD _diffrn_radiation_monochromator graphite _diffrn_radiation_probe x-ray _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0295 _diffrn_reflns_av_unetI/netI 0.0281 _diffrn_reflns_limit_h_max 11 _diffrn_reflns_limit_h_min -11 _diffrn_reflns_limit_k_max 12 _diffrn_reflns_limit_k_min -12 _diffrn_reflns_limit_l_max 19 _diffrn_reflns_limit_l_min -18 _diffrn_reflns_number 15459 _diffrn_reflns_theta_full 27.88 _diffrn_reflns_theta_max 27.88 _diffrn_reflns_theta_min 3.73 _exptl_absorpt_coefficient_mu 1.658 _exptl_absorpt_correction_T_max 0.6174 _exptl_absorpt_correction_T_min 0.5757 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details ; [c.f. r.h. blessing, acta cryst. (1995), a51, 33-38] ; _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.316 _exptl_crystal_description prism _exptl_crystal_F_000 492 _exptl_crystal_size_max 0.3 _exptl_crystal_size_mid 0.3 _exptl_crystal_size_min 0.3 _refine_diff_density_max 0.339 _refine_diff_density_min -0.317 _refine_diff_density_rms 0.041 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.04 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 266 _refine_ls_number_reflns 5599 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.04 _refine_ls_R_factor_all 0.0298 _refine_ls_R_factor_gt 0.0253 _refine_ls_shift/su_max 0 _refine_ls_shift/su_mean 0 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0117P)^2^+0.5539P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.0564 _refine_ls_wR_factor_ref 0.0585 _reflns_number_gt 5129 _reflns_number_total 5599 _reflns_threshold_expression >2sigma(I) _cod_data_source_file ja064212tsi20060615_042948.cif _cod_data_source_block oct2302 _cod_original_cell_volume 1190.24(2) _cod_database_code 4111001 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, -y, -z' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_symmetry_multiplicity _atom_site_calc_flag _atom_site_refinement_flags Se Se 0.783792(19) 0.194685(17) 0.013983(9) 0.03287(5) Uani 1 1 d . P P 0.64215(4) 0.25314(4) 0.13653(2) 0.02308(8) Uani 1 1 d . N1 N 0.85804(16) 0.00551(14) 0.21116(8) 0.0317(3) Uani 1 1 d . H1 H 0.898(2) 0.0149(19) 0.1567(13) 0.036(5) Uiso 1 1 d . N2 N 0.63929(15) 0.09751(14) 0.31211(8) 0.0317(3) Uani 1 1 d . C1 C 0.71125(17) 0.10683(15) 0.23339(9) 0.0269(3) Uani 1 1 d . C2 C 0.95887(17) -0.09624(15) 0.27885(9) 0.0283(3) Uani 1 1 d . H2 H 0.8943 -0.1523 0.3167 0.034 Uiso 1 1 calc R C3 C 1.01413(19) -0.01294(17) 0.34032(10) 0.0337(3) Uani 1 1 d . H3B H 1.0719 0.0483 0.3031 0.04 Uiso 1 1 calc R H3A H 0.9184 0.0543 0.373 0.04 Uiso 1 1 calc R C4 C 1.12535(19) -0.11943(18) 0.40840(10) 0.0363(3) Uani 1 1 d . H4B H 1.163 -0.0624 0.4453 0.044 Uiso 1 1 calc R H4A H 1.0646 -0.174 0.4495 0.044 Uiso 1 1 calc R C5 C 1.2701(2) -0.22888(19) 0.36099(12) 0.0412(4) Uani 1 1 d . H5B H 1.337 -0.3006 0.4065 0.049 Uiso 1 1 calc R H5A H 1.3373 -0.1752 0.3249 0.049 Uiso 1 1 calc R C6 C 1.2162(2) -0.31170(19) 0.29941(12) 0.0466(4) Uani 1 1 d . H6B H 1.1593 -0.3739 0.3365 0.056 Uiso 1 1 calc R H6A H 1.3124 -0.3782 0.2666 0.056 Uiso 1 1 calc R C7 C 1.1041(2) -0.20599(18) 0.23129(11) 0.0392(4) Uani 1 1 d . H7B H 1.1643 -0.1513 0.1898 0.047 Uiso 1 1 calc R H7A H 1.0666 -0.2636 0.1948 0.047 Uiso 1 1 calc R C8 C 0.49075(17) 0.21006(16) 0.34404(9) 0.0288(3) Uani 1 1 d . H8 H 0.4667 0.3012 0.3003 0.035 Uiso 1 1 calc R C9 C 0.51869(19) 0.24610(19) 0.43560(10) 0.0375(3) Uani 1 1 d . H9B H 0.5557 0.1531 0.4761 0.045 Uiso 1 1 calc R H9A H 0.6053 0.2901 0.4271 0.045 Uiso 1 1 calc R C10 C 0.3665(2) 0.3534(2) 0.48022(11) 0.0438(4) Uani 1 1 d . H10B H 0.3884 0.368 0.5408 0.053 Uiso 1 1 calc R H10A H 0.3365 0.4507 0.4435 0.053 Uiso 1 1 calc R C11 C 0.2267(2) 0.2946(2) 0.48931(12) 0.0500(5) Uani 1 1 d . H11B H 0.1276 0.3689 0.5146 0.06 Uiso 1 1 calc R H11A H 0.2516 0.2029 0.5315 0.06 Uiso 1 1 calc R C12 C 0.1972(2) 0.2616(2) 0.39772(12) 0.0432(4) Uani 1 1 d . H12B H 0.163 0.3549 0.3573 0.052 Uiso 1 1 calc R H12A H 0.1089 0.2198 0.4054 0.052 Uiso 1 1 calc R C13 C 0.34959(19) 0.15204(18) 0.35467(11) 0.0371(3) Uani 1 1 d . H13B H 0.3788 0.0561 0.3928 0.045 Uiso 1 1 calc R H13A H 0.328 0.1348 0.2946 0.045 Uiso 1 1 calc R C14 C 0.43392(17) 0.27398(16) 0.12571(9) 0.0272(3) Uani 1 1 d . C15 C 0.4059(2) 0.15120(19) 0.10220(12) 0.0420(4) Uani 1 1 d . H15 H 0.493 0.0605 0.0961 0.05 Uiso 1 1 calc R C16 C 0.2505(3) 0.1619(2) 0.08780(14) 0.0546(5) Uani 1 1 d . H16 H 0.231 0.078 0.0726 0.065 Uiso 1 1 calc R C17 C 0.1243(2) 0.2939(3) 0.09540(14) 0.0591(5) Uani 1 1 d . H17 H 0.0182 0.3009 0.0849 0.071 Uiso 1 1 calc R C18 C 0.1513(2) 0.4147(2) 0.11798(15) 0.0544(5) Uani 1 1 d . H18 H 0.0638 0.5054 0.1229 0.065 Uiso 1 1 calc R C19 C 0.30584(19) 0.40556(19) 0.13377(11) 0.0372(3) Uani 1 1 d . H19 H 0.3236 0.4896 0.1501 0.045 Uiso 1 1 calc R C20 C 0.65460(16) 0.42041(15) 0.17156(9) 0.0254(3) Uani 1 1 d . C21 C 0.73261(19) 0.41600(18) 0.24749(10) 0.0338(3) Uani 1 1 d . H21 H 0.7739 0.3254 0.2845 0.041 Uiso 1 1 calc R C22 C 0.7500(2) 0.5444(2) 0.26916(12) 0.0438(4) Uani 1 1 d . H22 H 0.804 0.5411 0.3208 0.053 Uiso 1 1 calc R C23 C 0.6896(2) 0.6762(2) 0.21618(13) 0.0490(4) Uani 1 1 d . H23 H 0.7003 0.7639 0.2318 0.059 Uiso 1 1 calc R C24 C 0.6132(3) 0.68096(19) 0.14032(13) 0.0486(4) Uani 1 1 d . H24 H 0.5714 0.7721 0.1039 0.058 Uiso 1 1 calc R C25 C 0.5974(2) 0.55350(17) 0.11708(11) 0.0372(3) Uani 1 1 d . H25 H 0.5475 0.5568 0.0639 0.045 Uiso 1 1 calc R loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 Se 0.03673(9) 0.04019(9) 0.02207(8) -0.00870(6) 0.00155(6) -0.01288(7) P 0.02622(17) 0.02503(17) 0.01961(16) -0.00362(12) -0.00250(13) -0.01002(14) N1 0.0337(7) 0.0334(7) 0.0211(6) -0.0025(5) -0.0020(5) -0.0031(5) N2 0.0322(6) 0.0326(6) 0.0259(6) 0.0008(5) -0.0005(5) -0.0077(5) C1 0.0300(7) 0.0263(7) 0.0246(6) -0.0023(5) -0.0047(5) -0.0092(6) C2 0.0313(7) 0.0278(7) 0.0237(6) -0.0024(5) -0.0037(5) -0.0071(6) C3 0.0351(8) 0.0320(8) 0.0322(7) -0.0095(6) -0.0042(6) -0.0063(6) C4 0.0366(8) 0.0416(9) 0.0309(8) -0.0083(6) -0.0064(6) -0.0106(7) C5 0.0354(8) 0.0414(9) 0.0425(9) -0.0090(7) -0.0106(7) -0.0036(7) C6 0.0495(10) 0.0350(8) 0.0464(10) -0.0141(7) -0.0168(8) 0.0046(7) C7 0.0432(9) 0.0355(8) 0.0309(8) -0.0118(6) -0.0070(7) 0.0008(7) C8 0.0300(7) 0.0315(7) 0.0223(6) 0.0014(5) 0.0002(5) -0.0096(6) C9 0.0347(8) 0.0495(9) 0.0246(7) -0.0032(6) -0.0024(6) -0.0099(7) C10 0.0432(9) 0.0530(10) 0.0311(8) -0.0119(7) -0.0028(7) -0.0087(8) C11 0.0403(9) 0.0615(12) 0.0401(9) -0.0100(8) 0.0110(8) -0.0104(9) C12 0.0328(8) 0.0493(10) 0.0484(10) -0.0065(8) 0.0046(7) -0.0173(7) C13 0.0379(8) 0.0381(8) 0.0367(8) -0.0031(6) 0.0047(7) -0.0175(7) C14 0.0304(7) 0.0333(7) 0.0225(6) -0.0027(5) -0.0041(5) -0.0161(6) C15 0.0489(10) 0.0388(9) 0.0477(9) -0.0077(7) -0.0044(8) -0.0252(8) C16 0.0624(12) 0.0707(13) 0.0542(11) -0.0156(10) -0.0019(9) -0.0493(11) C17 0.0388(10) 0.0948(17) 0.0598(12) -0.0192(11) -0.0034(9) -0.0388(11) C18 0.0290(8) 0.0690(13) 0.0662(13) -0.0192(10) -0.0050(8) -0.0130(9) C19 0.0303(8) 0.0420(9) 0.0427(9) -0.0130(7) -0.0037(6) -0.0129(7) C20 0.0271(7) 0.0290(7) 0.0235(6) -0.0067(5) 0.0009(5) -0.0132(5) C21 0.0359(8) 0.0399(8) 0.0301(7) -0.0064(6) -0.0063(6) -0.0161(7) C22 0.0470(10) 0.0571(11) 0.0399(9) -0.0193(8) -0.0049(7) -0.0275(8) C23 0.0581(11) 0.0440(10) 0.0582(11) -0.0200(8) 0.0026(9) -0.0308(9) C24 0.0665(12) 0.0324(9) 0.0529(11) -0.0024(7) -0.0066(9) -0.0243(8) C25 0.0509(9) 0.0331(8) 0.0324(8) -0.0012(6) -0.0080(7) -0.0197(7) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0 0 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' P P 0.1023 0.0942 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Se Se -0.0929 2.2259 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle C14 P C20 110.55(6) C14 P C1 106.32(6) C20 P C1 105.19(6) C14 P Se 110.19(5) C20 P Se 111.98(4) C1 P Se 112.37(4) C1 N1 C2 122.49(12) C1 N2 C8 124.06(12) N2 C1 N1 120.95(13) N2 C1 P 127.96(11) N1 C1 P 111.07(10) N1 C2 C7 109.06(11) N1 C2 C3 111.36(12) C7 C2 C3 110.39(13) C4 C3 C2 111.41(12) C5 C4 C3 110.96(13) C4 C5 C6 110.73(14) C5 C6 C7 111.81(14) C2 C7 C6 110.95(13) N2 C8 C13 110.49(12) N2 C8 C9 107.28(12) C13 C8 C9 109.89(12) C10 C9 C8 112.41(13) C11 C10 C9 111.00(15) C10 C11 C12 110.63(14) C11 C12 C13 111.07(15) C8 C13 C12 111.26(13) C19 C14 C15 119.37(14) C19 C14 P 123.80(11) C15 C14 P 116.70(12) C16 C15 C14 119.78(17) C17 C16 C15 120.28(17) C18 C17 C16 120.15(17) C17 C18 C19 120.41(18) C14 C19 C18 120.00(16) C21 C20 C25 119.31(13) C21 C20 P 121.21(11) C25 C20 P 119.24(11) C22 C21 C20 119.92(15) C23 C22 C21 120.34(16) C22 C23 C24 120.00(15) C23 C24 C25 120.29(17) C24 C25 C20 120.11(15) loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance Se P 2.1183(4) P C14 1.8108(14) P C20 1.8131(14) P C1 1.8811(14) N1 C1 1.3602(18) N1 C2 1.4595(18) N2 C1 1.2785(18) N2 C8 1.4585(18) C2 C7 1.521(2) C2 C3 1.528(2) C3 C4 1.524(2) C4 C5 1.516(2) C5 C6 1.519(2) C6 C7 1.525(2) C8 C13 1.527(2) C8 C9 1.531(2) C9 C10 1.525(2) C10 C11 1.522(3) C11 C12 1.524(3) C12 C13 1.526(2) C14 C19 1.384(2) C14 C15 1.395(2) C15 C16 1.386(3) C16 C17 1.378(3) C17 C18 1.366(3) C18 C19 1.390(2) C20 C21 1.391(2) C20 C25 1.393(2) C21 C22 1.391(2) C22 C23 1.376(3) C23 C24 1.381(3) C24 C25 1.385(2)