#------------------------------------------------------------------------------ #$Date: 2014-07-12 00:06:05 +0300 (Sat, 12 Jul 2014) $ #$Revision: 120077 $ #$URL: file:///home/coder/svn-repositories/cod/cif/4/11/10/4111004.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_4111004 loop_ _publ_author_name 'Natalie E. Mansfield' 'Joanna Grundy' 'Martyn P. Coles' 'Anthony G. Avent' 'Peter B. Hitchcock' _publ_section_title ; A Conformational Study of Phospha(III)- and Phospha(V)-guanidine Compounds ; _journal_name_full 'Journal of the American Chemical Society' _journal_page_first 13879 _journal_page_last 13893 _journal_volume 128 _journal_year 2006 _chemical_compound_source 'synthesis as described' _chemical_formula_moiety 'C25 H45 N2 P Se' _chemical_formula_sum 'C25 H45 N2 P Se' _chemical_formula_weight 483.56 _chemical_name_systematic ; ? ; _space_group_IT_number 2 _symmetry_cell_setting triclinic _symmetry_Int_Tables_number 2 _symmetry_space_group_name_Hall '-P 1' _symmetry_space_group_name_H-M 'P -1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_conform_dict_location ftp://ftp.iucr.org/pub/cif_core.dic _audit_conform_dict_name cif_core.dic _audit_conform_dict_version 2.2 _audit_creation_date 2004-12-20T10:01:21-00:00 _audit_creation_method 'WinGX routine CIF_UPDATE' _cell_angle_alpha 105.398(1) _cell_angle_beta 97.112(1) _cell_angle_gamma 104.885(1) _cell_formula_units_Z 2 _cell_length_a 9.9173(2) _cell_length_b 10.1444(3) _cell_length_c 14.1035(4) _cell_measurement_reflns_used 12451 _cell_measurement_temperature 173(2) _cell_measurement_theta_max 26.022 _cell_measurement_theta_min 3.395 _cell_measurement_wavelength 0.71073 _cell_volume 1293.67(6) _computing_cell_refinement 'HKL Scalepack (Otwinowski & Minor 1997)' _computing_data_collection 'Collect (Nonius BV, 1997-2000)' _computing_data_reduction 'HKL Denzo and Scalepack (Otwinowski & Minor 1997)' _computing_molecular_graphics 'Ortep-3 for Windows (Farrugia, 1997)' _computing_publication_material 'WinGX publication routines (Farrugia, 1999)' _computing_structure_refinement 'SHELXL-97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS-97 (Sheldrick, 1997)' _diffrn_ambient_temperature 173(2) _diffrn_detector 'CCD plate' _diffrn_measured_fraction_theta_full 0.99 _diffrn_measured_fraction_theta_max 0.99 _diffrn_measurement_device '95mm CCD camera on \k-goniostat' _diffrn_measurement_device_type KappaCCD _diffrn_measurement_method 'CCD rotation images, thick slices' _diffrn_orient_matrix_type 'by Nonius Collect from scalepack cell' _diffrn_orient_matrix_UB_11 -0.794928E-1 _diffrn_orient_matrix_UB_12 -0.660387E-1 _diffrn_orient_matrix_UB_13 -0.568454E-1 _diffrn_orient_matrix_UB_21 -0.49647E-1 _diffrn_orient_matrix_UB_22 -0.402106E-1 _diffrn_orient_matrix_UB_23 0.482885E-1 _diffrn_orient_matrix_UB_31 -0.508395E-1 _diffrn_orient_matrix_UB_32 0.743786E-1 _diffrn_orient_matrix_UB_33 0.92444E-2 _diffrn_radiation_monochromator graphite _diffrn_radiation_probe x-ray _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0415 _diffrn_reflns_av_unetI/netI 0.0318 _diffrn_reflns_limit_h_max 12 _diffrn_reflns_limit_h_min -12 _diffrn_reflns_limit_k_max 12 _diffrn_reflns_limit_k_min -12 _diffrn_reflns_limit_l_max 17 _diffrn_reflns_limit_l_min -17 _diffrn_reflns_number 21177 _diffrn_reflns_theta_full 26.08 _diffrn_reflns_theta_max 26.08 _diffrn_reflns_theta_min 3.52 _diffrn_source 'Enraf Nonius FR590' _exptl_absorpt_coefficient_mu 1.527 _exptl_absorpt_correction_T_max 0.5763 _exptl_absorpt_correction_T_min 0.5105 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details ; [c.f. r.h. blessing, acta cryst. (1995), a51, 33-38] ; _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.241 _exptl_crystal_description prism _exptl_crystal_F_000 516 _exptl_crystal_size_max 0.4 _exptl_crystal_size_mid 0.4 _exptl_crystal_size_min 0.35 _refine_diff_density_max 0.332 _refine_diff_density_min -0.293 _refine_diff_density_rms 0.049 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 0.944 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 266 _refine_ls_number_reflns 5083 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 0.944 _refine_ls_R_factor_all 0.0386 _refine_ls_R_factor_gt 0.0302 _refine_ls_shift/su_max 0.001 _refine_ls_shift/su_mean 0 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0385P)^2^+0.7877P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.0705 _refine_ls_wR_factor_ref 0.0747 _reflns_number_gt 4421 _reflns_number_total 5083 _reflns_threshold_expression >2sigma(I) _[local]_cod_data_source_file ja064212tsi20060615_043030.cif _[local]_cod_data_source_block dec3104 _cod_database_code 4111004 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, -y, -z' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_symmetry_multiplicity _atom_site_calc_flag _atom_site_refinement_flags Se Se 0.18222(2) 0.27153(2) 0.494444(14) 0.03125(8) Uani 1 1 d . P P 0.13285(5) 0.28708(5) 0.63831(3) 0.02033(11) Uani 1 1 d . N1 N 0.34451(18) 0.54095(18) 0.70311(13) 0.0287(4) Uani 1 1 d . H1N H 0.350(2) 0.504(2) 0.6452(18) 0.032(6) Uiso 1 1 d . N2 N 0.19164(17) 0.47567(16) 0.81583(12) 0.0258(4) Uani 1 1 d . C1 C 0.16859(19) 0.14371(19) 0.68475(14) 0.0227(4) Uani 1 1 d . H1 H 0.1151 0.0511 0.6314 0.027 Uiso 1 1 calc R C2 C 0.3275(2) 0.1543(2) 0.69511(17) 0.0324(5) Uani 1 1 d . H2B H 0.3565 0.155 0.6305 0.039 Uiso 1 1 calc R H2A H 0.3851 0.2453 0.7469 0.039 Uiso 1 1 calc R C3 C 0.3563(2) 0.0285(2) 0.72440(17) 0.0370(5) Uani 1 1 d . H3B H 0.3064 -0.0616 0.6693 0.044 Uiso 1 1 calc R H3A H 0.4598 0.0403 0.734 0.044 Uiso 1 1 calc R C4 C 0.3062(2) 0.0181(2) 0.82061(17) 0.0366(5) Uani 1 1 d . H4B H 0.3217 -0.0675 0.8356 0.044 Uiso 1 1 calc R H4A H 0.3629 0.1039 0.8772 0.044 Uiso 1 1 calc R C5 C 0.1493(2) 0.0073(2) 0.81035(18) 0.0341(5) Uani 1 1 d . H5B H 0.1204 0.0055 0.8748 0.041 Uiso 1 1 calc R H5A H 0.0921 -0.0836 0.7583 0.041 Uiso 1 1 calc R C6 C 0.1181(2) 0.1334(2) 0.78173(15) 0.0274(4) Uani 1 1 d . H6B H 0.1674 0.2236 0.8369 0.033 Uiso 1 1 calc R H6A H 0.0144 0.1203 0.7721 0.033 Uiso 1 1 calc R C7 C -0.05038(19) 0.28406(19) 0.64398(14) 0.0213(4) Uani 1 1 d . H7 H -0.0597 0.2986 0.7155 0.026 Uiso 1 1 calc R C8 C -0.0852(2) 0.4071(2) 0.61328(17) 0.0338(5) Uani 1 1 d . H8B H -0.0183 0.4998 0.6576 0.041 Uiso 1 1 calc R H8A H -0.0734 0.3981 0.5434 0.041 Uiso 1 1 calc R C9 C -0.2378(3) 0.4046(3) 0.6209(2) 0.0450(6) Uani 1 1 d . H9B H -0.2466 0.4239 0.6921 0.054 Uiso 1 1 calc R H9A H -0.2604 0.4814 0.5971 0.054 Uiso 1 1 calc R C10 C -0.3438(2) 0.2608(3) 0.5588(2) 0.0515(7) Uani 1 1 d . H10B H -0.4411 0.2611 0.568 0.062 Uiso 1 1 calc R H10A H -0.3421 0.246 0.4867 0.062 Uiso 1 1 calc R C11 C -0.3093(2) 0.1384(3) 0.58895(19) 0.0423(6) Uani 1 1 d . H11B H -0.3769 0.046 0.5448 0.051 Uiso 1 1 calc R H11A H -0.3207 0.1476 0.6589 0.051 Uiso 1 1 calc R C12 C -0.1577(2) 0.1391(2) 0.58091(16) 0.0330(5) Uani 1 1 d . H12B H -0.149 0.12 0.5097 0.04 Uiso 1 1 calc R H12A H -0.1358 0.0619 0.6045 0.04 Uiso 1 1 calc R C13 C 0.23916(19) 0.45980(19) 0.73503(14) 0.0216(4) Uani 1 1 d . C14 C 0.46896(19) 0.66071(19) 0.76256(14) 0.0221(4) Uani 1 1 d . H14 H 0.435 0.7375 0.8037 0.027 Uiso 1 1 calc R C15 C 0.5515(2) 0.7208(2) 0.69156(15) 0.0307(5) Uani 1 1 d . H15B H 0.4889 0.7526 0.648 0.037 Uiso 1 1 calc R H15A H 0.5819 0.6447 0.6479 0.037 Uiso 1 1 calc R C16 C 0.6822(2) 0.8470(2) 0.75000(16) 0.0344(5) Uani 1 1 d . H16B H 0.737 0.8802 0.7022 0.041 Uiso 1 1 calc R H16A H 0.6509 0.9273 0.7875 0.041 Uiso 1 1 calc R C17 C 0.7776(2) 0.8077(2) 0.82288(18) 0.0398(5) Uani 1 1 d . H17B H 0.8568 0.8942 0.8631 0.048 Uiso 1 1 calc R H17A H 0.8192 0.7365 0.785 0.048 Uiso 1 1 calc R C18 C 0.6945(2) 0.7452(3) 0.89300(18) 0.0417(6) Uani 1 1 d . H18B H 0.6624 0.82 0.9365 0.05 Uiso 1 1 calc R H18A H 0.7576 0.7141 0.9367 0.05 Uiso 1 1 calc R C19 C 0.5652(2) 0.6174(2) 0.83316(17) 0.0324(5) Uani 1 1 d . H19B H 0.5977 0.5394 0.7937 0.039 Uiso 1 1 calc R H19A H 0.511 0.5807 0.88 0.039 Uiso 1 1 calc R C20 C 0.2370(2) 0.60350(19) 0.90451(14) 0.0242(4) Uani 1 1 d . H20 H 0.3271 0.6718 0.9002 0.029 Uiso 1 1 calc R C21 C 0.1180(2) 0.6738(2) 0.90703(15) 0.0309(5) Uani 1 1 d . H21B H 0.0265 0.6009 0.9009 0.037 Uiso 1 1 calc R H21A H 0.1094 0.7104 0.8488 0.037 Uiso 1 1 calc R C22 C 0.1458(3) 0.7975(2) 1.00404(16) 0.0362(5) Uani 1 1 d . H22B H 0.2301 0.8764 1.0058 0.043 Uiso 1 1 calc R H22A H 0.0627 0.8346 1.0051 0.043 Uiso 1 1 calc R C23 C 0.1717(2) 0.7496(2) 1.09620(15) 0.0315(5) Uani 1 1 d . H23B H 0.1962 0.8334 1.1575 0.038 Uiso 1 1 calc R H23A H 0.0833 0.6794 1.0989 0.038 Uiso 1 1 calc R C24 C 0.2915(2) 0.6820(2) 1.09422(15) 0.0363(5) Uani 1 1 d . H24B H 0.302 0.6467 1.153 0.044 Uiso 1 1 calc R H24A H 0.3822 0.7551 1.0989 0.044 Uiso 1 1 calc R C25 C 0.2610(2) 0.5571(2) 0.99744(15) 0.0312(5) Uani 1 1 d . H25B H 0.3424 0.5174 0.9966 0.037 Uiso 1 1 calc R H25A H 0.1753 0.4801 0.9962 0.037 Uiso 1 1 calc R loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 Se 0.04467(14) 0.02770(12) 0.02330(12) 0.00770(8) 0.01608(9) 0.01018(9) P 0.0240(2) 0.0176(2) 0.0195(2) 0.00479(18) 0.00771(19) 0.00599(19) N1 0.0287(9) 0.0275(9) 0.0223(9) 0.0036(7) 0.0086(7) -0.0015(7) N2 0.0282(9) 0.0200(8) 0.0241(8) 0.0025(6) 0.0090(7) 0.0014(7) C1 0.0241(9) 0.0195(9) 0.0256(10) 0.0061(7) 0.0084(8) 0.0079(7) C2 0.0294(11) 0.0406(12) 0.0378(12) 0.0189(10) 0.0166(9) 0.0171(9) C3 0.0329(11) 0.0439(13) 0.0452(13) 0.0171(11) 0.0137(10) 0.0239(10) C4 0.0346(12) 0.0415(12) 0.0440(13) 0.0227(10) 0.0101(10) 0.0184(10) C5 0.0331(11) 0.0350(11) 0.0452(13) 0.0249(10) 0.0141(10) 0.0135(9) C6 0.0284(10) 0.0296(10) 0.0328(11) 0.0159(9) 0.0133(9) 0.0136(8) C7 0.0225(9) 0.0215(9) 0.0201(9) 0.0053(7) 0.0049(7) 0.0076(7) C8 0.0392(12) 0.0356(11) 0.0405(12) 0.0223(10) 0.0172(10) 0.0199(10) C9 0.0497(14) 0.0583(15) 0.0573(15) 0.0385(13) 0.0293(12) 0.0376(13) C10 0.0320(12) 0.090(2) 0.0477(15) 0.0325(15) 0.0119(11) 0.0304(13) C11 0.0249(11) 0.0456(13) 0.0468(14) 0.0080(11) 0.0010(10) 0.0042(10) C12 0.0275(10) 0.0277(11) 0.0338(11) 0.0003(9) 0.0010(9) 0.0036(9) C13 0.0226(9) 0.0186(9) 0.0242(10) 0.0066(7) 0.0061(8) 0.0069(7) C14 0.0210(9) 0.0207(9) 0.0244(9) 0.0070(8) 0.0073(7) 0.0048(7) C15 0.0299(11) 0.0312(11) 0.0290(11) 0.0107(9) 0.0100(9) 0.0025(9) C16 0.0324(11) 0.0290(11) 0.0386(12) 0.0113(9) 0.0153(10) -0.0004(9) C17 0.0240(11) 0.0375(12) 0.0523(14) 0.0116(11) 0.0079(10) 0.0019(9) C18 0.0305(11) 0.0468(14) 0.0449(14) 0.0210(11) -0.0036(10) 0.0050(10) C19 0.0283(10) 0.0315(11) 0.0431(12) 0.0195(10) 0.0095(9) 0.0094(9) C20 0.0250(10) 0.0200(9) 0.0222(9) 0.0025(7) 0.0082(8) 0.0000(8) C21 0.0420(12) 0.0255(10) 0.0253(10) 0.0073(8) 0.0046(9) 0.0119(9) C22 0.0499(13) 0.0249(10) 0.0339(12) 0.0051(9) 0.0096(10) 0.0151(10) C23 0.0372(11) 0.0263(10) 0.0250(10) 0.0016(8) 0.0130(9) 0.0028(9) C24 0.0401(12) 0.0420(12) 0.0233(10) 0.0065(9) 0.0045(9) 0.0111(10) C25 0.0352(11) 0.0341(11) 0.0276(11) 0.0089(9) 0.0085(9) 0.0156(9) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0 0 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' P P 0.1023 0.0942 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Se Se -0.0929 2.2259 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle C7 P C1 108.14(8) C7 P C13 103.02(8) C1 P C13 106.46(9) C7 P Se 114.32(6) C1 P Se 111.59(6) C13 P Se 112.67(6) C13 N1 C14 128.96(17) C13 N2 C20 127.04(16) C6 C1 C2 110.80(16) C6 C1 P 115.64(12) C2 C1 P 110.28(13) C3 C2 C1 110.85(17) C4 C3 C2 111.46(17) C5 C4 C3 110.79(18) C4 C5 C6 111.65(17) C5 C6 C1 110.56(16) C8 C7 C12 111.02(17) C8 C7 P 111.30(13) C12 C7 P 112.02(13) C9 C8 C7 110.44(17) C10 C9 C8 111.41(19) C11 C10 C9 111.37(19) C10 C11 C12 110.9(2) C11 C12 C7 110.90(17) N2 C13 N1 134.89(18) N2 C13 P 111.02(13) N1 C13 P 114.05(13) N1 C14 C19 112.41(16) N1 C14 C15 108.85(16) C19 C14 C15 110.26(16) C14 C15 C16 110.94(17) C17 C16 C15 111.96(18) C16 C17 C18 111.01(17) C17 C18 C19 110.87(19) C14 C19 C18 110.67(17) N2 C20 C25 108.50(16) N2 C20 C21 107.71(15) C25 C20 C21 110.45(16) C20 C21 C22 112.02(17) C23 C22 C21 111.37(17) C24 C23 C22 111.34(17) C23 C24 C25 110.78(17) C20 C25 C24 111.82(17) loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance Se P 2.1207(5) P C7 1.8215(18) P C1 1.8393(19) P C13 1.8622(18) N1 C13 1.358(2) N1 C14 1.461(2) N2 C13 1.273(2) N2 C20 1.466(2) C1 C6 1.533(3) C1 C2 1.538(3) C2 C3 1.523(3) C3 C4 1.521(3) C4 C5 1.518(3) C5 C6 1.530(3) C7 C8 1.528(3) C7 C12 1.534(3) C8 C9 1.524(3) C9 C10 1.519(4) C10 C11 1.517(4) C11 C12 1.520(3) C14 C19 1.519(3) C14 C15 1.522(3) C15 C16 1.523(3) C16 C17 1.511(3) C17 C18 1.525(3) C18 C19 1.528(3) C20 C25 1.518(3) C20 C21 1.527(3) C21 C22 1.530(3) C22 C23 1.519(3) C23 C24 1.517(3) C24 C25 1.531(3) _journal_paper_doi 10.1021/ja064212t