#------------------------------------------------------------------------------ #$Date: 2016-03-22 12:41:31 +0200 (Tue, 22 Mar 2016) $ #$Revision: 178959 $ #$URL: file:///home/coder/svn-repositories/cod/cif/4/11/88/4118891.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_4118891 loop_ _publ_author_name 'Olga Karagiaridi' 'Marianne B. Lalonde' 'Wojciech Bury' 'Amy A. Sarjeant' 'Omar K. Farha' 'Joseph T. Hupp' _publ_contact_author_name ; ; _publ_section_title ; Opening ZIF-8: A Catalytically Active Zeolitic Imidazolate Framework of Sodalite Topology with Unsubstituted Linkers ; _journal_name_full 'Journal of the American Chemical Society' _journal_page_first 18790 _journal_page_last 18796 _journal_paper_doi 10.1021/ja308786r _journal_volume 134 _journal_year 2012 _chemical_absolute_configuration ad _chemical_formula_moiety 'C6 H6 N4 Zn' _chemical_formula_sum 'C6 H6 N4 Zn' _chemical_formula_weight 199.52 _chemical_name_systematic ; ? ; _space_group_crystal_system cubic _space_group_IT_number 217 _space_group_name_Hall 'I -4 2 3' _space_group_name_H-M_alt 'I -4 3 m' _symmetry_space_group_name_Hall 'I -4 2 3' _symmetry_space_group_name_H-M 'I -4 3 m' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary dual _atom_sites_solution_secondary difmap _audit_creation_date 2012-03-21 _audit_creation_method ; Olex2 1.1 (compiled Nov 1 2011 20:42:30, GUI svn.r3906) ; _cell_angle_alpha 90.00 _cell_angle_beta 90.00 _cell_angle_gamma 90.00 _cell_formula_units_Z 12 _cell_length_a 16.8303(2) _cell_length_b 16.8303(2) _cell_length_c 16.8303(2) _cell_measurement_reflns_used 7883 _cell_measurement_temperature 100(2) _cell_measurement_theta_max 66.36 _cell_measurement_theta_min 3.71 _cell_volume 4767.33(10) _computing_cell_refinement 'SAINT V7.23A (Bruker, 2005)' _computing_data_collection 'APEX2 V2.1-4 (Bruker, 2007)' _computing_data_reduction 'Bruker SAINT' _computing_molecular_graphics ; O. V. Dolomanov, L. J. Bourhis, R. J. Gildea, J. A. K. Howard and H. Puschmann, OLEX2: a complete structure solution, refinement and analysis program. J. Appl. Cryst. (2009). 42, 339-341. ; _computing_publication_material ; O. V. Dolomanov, L. J. Bourhis, R. J. Gildea, J. A. K. Howard and H. Puschmann, OLEX2: a complete structure solution, refinement and analysis program. J. Appl. Cryst. (2009). 42, 339-341. ; _computing_structure_refinement ; XL, G.M. Sheldrick, Acta Cryst. (2008). A64, 112-122 ; _computing_structure_solution ; XM, G.M. Sheldrick, Acta Cryst. (2008). A64, 112-122 ; _diffrn_ambient_temperature 100.01 _diffrn_detector_area_resol_mean 8 _diffrn_measured_fraction_theta_full 0.983 _diffrn_measured_fraction_theta_max 0.983 _diffrn_measurement_device_type 'Bruker Kappa APEX CCD area detector' _diffrn_measurement_method '\w and \f scans' _diffrn_radiation_monochromator 'MX optics' _diffrn_radiation_type CuK\a _diffrn_radiation_wavelength 1.54184 _diffrn_reflns_av_R_equivalents 0.0271 _diffrn_reflns_av_unetI/netI 0.0144 _diffrn_reflns_limit_h_max 19 _diffrn_reflns_limit_h_min -20 _diffrn_reflns_limit_k_max 19 _diffrn_reflns_limit_k_min -10 _diffrn_reflns_limit_l_max 17 _diffrn_reflns_limit_l_min -19 _diffrn_reflns_number 10526 _diffrn_reflns_theta_full 67.36 _diffrn_reflns_theta_max 67.36 _diffrn_reflns_theta_min 3.71 _diffrn_source microsource _diffrn_source_current 0.65 _diffrn_source_power 0.02925 _diffrn_source_voltage 45.0 _exptl_absorpt_coefficient_mu 1.894 _exptl_absorpt_correction_T_max 0.7529 _exptl_absorpt_correction_T_min 0.6476 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details ; SADABS-2008/1 (Bruker,2008) was used for absorption correction. R(int) was 0.0745 before and 0.0412 after correction. The Ratio of minimum to maximum transmission is 0.8601. The \l/2 correction factor is 0.0015. ; _exptl_crystal_colour colourless _exptl_crystal_colour_primary colourless _exptl_crystal_density_diffrn 0.834 _exptl_crystal_description block _exptl_crystal_F_000 1200 _exptl_crystal_size_max 0.177 _exptl_crystal_size_mid 0.16 _exptl_crystal_size_min 0.064 _refine_diff_density_max 0.298 _refine_diff_density_min -0.166 _refine_diff_density_rms 0.043 _refine_ls_abs_structure_details 'Flack H D (1983), Acta Cryst. A39, 876-881' _refine_ls_abs_structure_Flack -0.01(5) _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.097 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 37 _refine_ls_number_reflns 822 _refine_ls_number_restraints 7 _refine_ls_restrained_S_all 1.095 _refine_ls_R_factor_all 0.0269 _refine_ls_R_factor_gt 0.0269 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0583P)^2^+0.1634P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.0698 _refine_ls_wR_factor_ref 0.0698 _reflns_number_gt 821 _reflns_number_total 822 _reflns_threshold_expression >2sigma(I) _cod_data_source_file ja308786r_si_002.cif _cod_data_source_block n1705 _cod_database_code 4118891 #BEGIN Tags that were not found in dictionaries: _smtbx_masks_special_details ; The solvent masking procedure as implemented in Olex2 was used to remove the electronic contribution of solvent molecules from the refinement. Only the atoms used in the refinement model are reported in the formula here. Total solvent accessible volume / cell = 2584.3 Ang^3 [54.2%] Total electron count / cell = 522.4 ; #END Tags that were not found in dictionaries loop_ _space_group_symop_id _space_group_symop_operation_xyz 1 'x, y, z' 2 'y, -x, -z' 3 '-x, -y, z' 4 '-y, x, -z' 5 '-x, z, -y' 6 'x, -y, -z' 7 '-x, -z, y' 8 '-z, -y, x' 9 '-x, y, -z' 10 'z, -y, -x' 11 'z, x, y' 12 'y, z, x' 13 '-y, -z, x' 14 'z, -x, -y' 15 '-y, z, -x' 16 '-z, -x, y' 17 '-z, x, -y' 18 'y, -z, -x' 19 '-y, -x, z' 20 'y, x, z' 21 'x, -z, -y' 22 'x, z, y' 23 '-z, y, -x' 24 'z, y, x' 25 'x+1/2, y+1/2, z+1/2' 26 'y+1/2, -x+1/2, -z+1/2' 27 '-x+1/2, -y+1/2, z+1/2' 28 '-y+1/2, x+1/2, -z+1/2' 29 '-x+1/2, z+1/2, -y+1/2' 30 'x+1/2, -y+1/2, -z+1/2' 31 '-x+1/2, -z+1/2, y+1/2' 32 '-z+1/2, -y+1/2, x+1/2' 33 '-x+1/2, y+1/2, -z+1/2' 34 'z+1/2, -y+1/2, -x+1/2' 35 'z+1/2, x+1/2, y+1/2' 36 'y+1/2, z+1/2, x+1/2' 37 '-y+1/2, -z+1/2, x+1/2' 38 'z+1/2, -x+1/2, -y+1/2' 39 '-y+1/2, z+1/2, -x+1/2' 40 '-z+1/2, -x+1/2, y+1/2' 41 '-z+1/2, x+1/2, -y+1/2' 42 'y+1/2, -z+1/2, -x+1/2' 43 '-y+1/2, -x+1/2, z+1/2' 44 'y+1/2, x+1/2, z+1/2' 45 'x+1/2, -z+1/2, -y+1/2' 46 'x+1/2, z+1/2, y+1/2' 47 '-z+1/2, y+1/2, -x+1/2' 48 'z+1/2, y+1/2, x+1/2' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_symmetry_multiplicity _atom_site_calc_flag _atom_site_refinement_flags _atom_site_disorder_group Zn1 Zn 0.5000 0.2500 0.0000 0.05172(18) Uani 1 4 d S . N1 N 0.53668(10) 0.18295(10) 0.08924(11) 0.0630(4) Uani 1 1 d D . C1 C 0.5039(4) 0.12063(9) 0.12063(9) 0.0583(5) Uani 1 2 d S . H1 H 0.4569 0.0985 0.0985 0.070 Uiso 1 2 calc SR . C2 C 0.6083(4) 0.1825(8) 0.1263(6) 0.098(3) Uani 0.63(3) 1 d PDU 1 H2 H 0.6516 0.2167 0.1143 0.118 Uiso 0.63(3) 1 calc PR 1 C2A C 0.5763(18) 0.2129(12) 0.1536(13) 0.126(8) Uani 0.37(3) 1 d PDU 2 H2A H 0.5995 0.2642 0.1576 0.151 Uiso 0.37(3) 1 calc PR 2 loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 Zn1 0.05526(19) 0.0446(2) 0.05526(19) 0.000 0.000 0.000 N1 0.0591(8) 0.0588(8) 0.0712(10) 0.0165(7) -0.0037(8) -0.0051(7) C1 0.0650(14) 0.0550(6) 0.0550(6) 0.0005(8) -0.0016(12) -0.0016(12) C2 0.055(3) 0.116(6) 0.124(5) 0.065(4) -0.016(3) -0.020(3) C2A 0.099(13) 0.106(9) 0.172(13) 0.068(9) -0.050(10) -0.047(9) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0181 0.0091 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0311 0.0180 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Zn Zn -1.5491 0.6778 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_3 N1 Zn1 N1 109.00(5) 9_655 34 N1 Zn1 N1 109.00(5) 9_655 32_554 N1 Zn1 N1 110.41(11) 34 32_554 N1 Zn1 N1 110.41(11) 9_655 . N1 Zn1 N1 109.00(5) 34 . N1 Zn1 N1 109.00(5) 32_554 . C1 N1 Zn1 129.6(3) . . C1 N1 C2 100.7(4) . . C1 N1 C2A 100.6(6) . . C2 N1 Zn1 129.0(3) . . C2 N1 C2A 37.4(11) . . C2A N1 Zn1 122.9(6) . . N1 C1 N1 118.5(5) . 22 N1 C1 H1 120.8 22 . N1 C1 H1 120.8 . . N1 C2 H2 125.4 . . C2 C2 N1 109.2(3) 22 . C2 C2 H2 125.4 22 . N1 C2A C2A 107.4(5) . 22 N1 C2A H2A 126.3 . . C2A C2A H2A 126.3 22 . loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_site_symmetry_2 Zn1 N1 1.9775(16) 34 Zn1 N1 1.9775(16) 9_655 Zn1 N1 1.9775(16) . Zn1 N1 1.9775(16) 32_554 N1 C1 1.298(3) . N1 C2 1.358(6) . N1 C2A 1.368(13) . C1 N1 1.298(3) 22 C1 H1 0.9500 . C2 C2 1.337(12) 22 C2 H2 0.9500 . C2A C2A 1.41(2) 22 C2A H2A 0.9500 . loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion _geom_torsion_site_symmetry_1 _geom_torsion_site_symmetry_4 Zn1 N1 C1 N1 -175.38(17) . 22 Zn1 N1 C2 C2 -178.6(3) . 22 Zn1 N1 C2A C2A 166.2(5) . 22 N1 Zn1 N1 C1 74.3(2) 32_554 . N1 Zn1 N1 C1 -165.1(3) 34 . N1 Zn1 N1 C1 -45.4(3) 9_655 . N1 Zn1 N1 C2 -116.6(9) 32_554 . N1 Zn1 N1 C2 4.0(9) 34 . N1 Zn1 N1 C2 123.7(9) 9_655 . N1 Zn1 N1 C2A 50.0(19) 34 . N1 Zn1 N1 C2A 169.7(19) 9_655 . N1 Zn1 N1 C2A -70.5(19) 32_554 . C1 N1 C2 C2 -7.1(4) . 22 C1 N1 C2A C2A 13.0(8) . 22 C2 N1 C1 N1 13.3(8) . 22 C2 N1 C2A C2A -80.9(9) . 22 C2A N1 C1 N1 -24.8(16) . 22 C2A N1 C2 C2 86.2(10) . 22 #BEGIN Loops that were not found in dictionaries: loop_ _smtbx_masks_void_nr _smtbx_masks_void_average_x _smtbx_masks_void_average_y _smtbx_masks_void_average_z _smtbx_masks_void_volume _smtbx_masks_void_count_electrons 1 -0.265 -0.025 -0.888 2584.3 522.4 #END Loops that were not found in dictionaries