#------------------------------------------------------------------------------ #$Date: 2010-09-26 14:00:33 +0300 (Sun, 26 Sep 2010) $ #$Revision: 1526 $ #$URL: file:///home/coder/svn-repositories/cod/cif/4/4308396.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_4308396 loop_ _publ_author_name 'Alessia Bacchi' 'Elsa Bosetti' 'Mauro Carcelli' 'Paolo Pelagatti' 'Dominga Rogolino' 'Giancarlo Pelizzi' _publ_section_title ; "Venetian Blinds" Mechanism of Solvation/Desolvation in Palladium(II) Wheel-and-Axle Organic-Inorganic Diols ; _journal_name_full 'Inorganic Chemistry' _journal_page_first 431 _journal_page_last 442 _journal_volume 45 _journal_year 2006 _chemical_formula_sum 'C42 H42 Cl2 N4 O4 Pd' _chemical_formula_weight 844.10 _chemical_name_systematic ; ? ; _space_group_IT_number 14 _symmetry_cell_setting mpnoclinic _symmetry_space_group_name_Hall '-P 2ybc' _symmetry_space_group_name_H-M 'P 1 21/c 1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 90.00 _cell_angle_beta 88.17(2) _cell_angle_gamma 90.00 _cell_formula_units_Z 2 _cell_length_a 7.191(8) _cell_length_b 15.06(2) _cell_length_c 18.84(2) _cell_measurement_temperature 293(2) _cell_volume 2039(4) _computing_cell_refinement ; SAINT: SAX, Area Detector Integration, Siemens Analytical instruments INC., Madison, Wisconsin, USA. ; _computing_data_collection ; SAINT: SAX, Area Detector Integration, Siemens Analytical instruments INC., Madison, Wisconsin, USA. ; _computing_data_reduction ; SAINT: SAX, Area Detector Integration, Siemens Analytical instruments INC., Madison, Wisconsin, USA. SADABS: Siemens Area Detector Absorption Correction Software, Sheldrick G., 1996, University of Goettingen, Germany. ; _computing_molecular_graphics 'Ortep-3 for Windows (Farrugia, 1997)' _computing_publication_material 'PARST - M. Nardelli, J. Appl. Crystallogr. 1995, 28, 659' _computing_structure_refinement 'SHELXL-97 (Sheldrick, 1997)' _computing_structure_solution 'SIR97 (Altomare et al., 1997)' _diffrn_ambient_temperature 293(2) _diffrn_detector_area_resol_mean 8.2 _diffrn_measured_fraction_theta_full 0.945 _diffrn_measured_fraction_theta_max 0.945 _diffrn_measurement_device_type 'Bruker AXS CCD diffractometer' _diffrn_measurement_method '\w scan' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0676 _diffrn_reflns_av_sigmaI/netI 0.0444 _diffrn_reflns_limit_h_max 9 _diffrn_reflns_limit_h_min -9 _diffrn_reflns_limit_k_max 19 _diffrn_reflns_limit_k_min -20 _diffrn_reflns_limit_l_max 24 _diffrn_reflns_limit_l_min -24 _diffrn_reflns_number 22276 _diffrn_reflns_theta_full 28.26 _diffrn_reflns_theta_max 28.26 _diffrn_reflns_theta_min 1.73 _exptl_absorpt_coefficient_mu 0.631 _exptl_absorpt_correction_T_max 1. _exptl_absorpt_correction_T_min 0.593361 _exptl_absorpt_correction_type 'symmetry related measurements' _exptl_absorpt_process_details 'as implemented in SAINT+/SADABS package' _exptl_crystal_colour yellow _exptl_crystal_density_diffrn 1.375 _exptl_crystal_density_method 'not measured' _exptl_crystal_description prism _exptl_crystal_F_000 868 _exptl_crystal_size_max 0.23 _exptl_crystal_size_mid 0.12 _exptl_crystal_size_min 0.04 _refine_diff_density_max 3.506 _refine_diff_density_min -1.911 _refine_diff_density_rms 0.181 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.231 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 245 _refine_ls_number_reflns 4774 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.231 _refine_ls_R_factor_all 0.1346 _refine_ls_R_factor_gt 0.1204 _refine_ls_shift/su_max 0.003 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0873P)^2^+32.8889P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.3252 _refine_ls_wR_factor_ref 0.3312 _reflns_number_gt 3997 _reflns_number_total 4774 _reflns_threshold_expression >2sigma(I) _[local]_cod_data_source_file ic048896msi20040811_044420_05.cif _[local]_cod_data_source_block 4 _cod_database_code 4308396 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y+1/2, -z+1/2' '-x, -y, -z' 'x, -y-1/2, z-1/2' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_symmetry_multiplicity _atom_site_calc_flag _atom_site_refinement_flags _atom_site_disorder_assembly _atom_site_disorder_group Pd1 Pd 0.0000 0.0000 0.0000 0.0346(3) Uani 1 2 d S . . O1 O -0.6201(10) -0.0561(7) -0.2666(5) 0.057(2) Uani 1 1 d . . . O2 O -0.8604(14) 0.0021(7) -0.3671(6) 0.072(3) Uani 1 1 d . . . Cl2 Cl 0.2237(4) -0.1059(2) -0.02528(16) 0.0520(7) Uani 1 1 d . . . N1 N -0.1302(11) -0.0285(6) -0.0925(4) 0.0352(17) Uani 1 1 d . . . N2 N -0.8582(18) 0.1529(9) -0.3812(8) 0.073(3) Uani 1 1 d . . . C1 C -0.4318(14) -0.0611(7) -0.2865(5) 0.039(2) Uani 1 1 d . . . C2 C -0.3173(14) -0.0517(7) -0.2186(5) 0.038(2) Uani 1 1 d . . . C3 C -0.4078(15) -0.0622(8) -0.1533(6) 0.044(2) Uani 1 1 d . . . H3 H -0.5325 -0.0786 -0.1506 0.052 Uiso 1 1 calc R . . C4 C -0.3102(13) -0.0479(8) -0.0914(5) 0.038(2) Uani 1 1 d . . . H4 H -0.3738 -0.0523 -0.0477 0.046 Uiso 1 1 calc R . . C5 C -0.0371(15) -0.0216(7) -0.1559(5) 0.041(2) Uani 1 1 d . . . H5 H 0.0899 -0.0097 -0.1573 0.049 Uiso 1 1 calc R . . C6 C -0.1289(15) -0.0322(8) -0.2187(6) 0.046(3) Uani 1 1 d . . . H6 H -0.0632 -0.0260 -0.2617 0.055 Uiso 1 1 calc R . . C7 C -0.3830(15) 0.0176(7) -0.3389(6) 0.043(2) Uani 1 1 d . . . C8 C -0.386(2) 0.1038(9) -0.3109(7) 0.062(3) Uani 1 1 d . . . H8 H -0.4040 0.1126 -0.2623 0.074 Uiso 1 1 calc R . . C9 C -0.363(2) 0.1769(10) -0.3568(9) 0.075(4) Uani 1 1 d . . . H9 H -0.3637 0.2339 -0.3378 0.090 Uiso 1 1 calc R . . C10 C -0.339(2) 0.1663(10) -0.4273(9) 0.072(4) Uani 1 1 d . . . H10 H -0.3251 0.2156 -0.4567 0.086 Uiso 1 1 calc R . . C11 C -0.334(2) 0.0814(10) -0.4561(7) 0.063(3) Uani 1 1 d . . . H11 H -0.3150 0.0734 -0.5048 0.076 Uiso 1 1 calc R . . C12 C -0.3572(19) 0.0082(9) -0.4111(7) 0.056(3) Uani 1 1 d . . . H12 H -0.3554 -0.0486 -0.4306 0.068 Uiso 1 1 calc R . . C13 C -0.3851(19) -0.1536(8) -0.3239(6) 0.053(3) Uani 1 1 d . . . C14 C -0.530(3) -0.2102(10) -0.3378(8) 0.075(4) Uani 1 1 d . . . H14 H -0.6512 -0.1944 -0.3243 0.090 Uiso 1 1 calc R . . C15 C -0.496(4) -0.2918(12) -0.3724(10) 0.099(7) Uani 1 1 d . . . H15 H -0.5944 -0.3287 -0.3835 0.118 Uiso 1 1 calc R . . C16 C -0.319(4) -0.3161(12) -0.3894(10) 0.107(8) Uani 1 1 d . . . H16 H -0.2962 -0.3707 -0.4111 0.129 Uiso 1 1 calc R . . C17 C -0.174(3) -0.2611(13) -0.3751(9) 0.093(6) Uani 1 1 d . . . H17 H -0.0533 -0.2788 -0.3870 0.112 Uiso 1 1 calc R . . C18 C -0.205(2) -0.1782(10) -0.3428(8) 0.071(4) Uani 1 1 d . . . H18 H -0.1057 -0.1405 -0.3342 0.085 Uiso 1 1 calc R . . C19 C -0.859(2) 0.0683(11) -0.4042(7) 0.064(3) Uani 1 1 d . . . C20 C -0.862(3) 0.1734(16) -0.3073(11) 0.115(8) Uani 1 1 d . . . H20A H -0.8605 0.2367 -0.3011 0.172 Uiso 1 1 calc R . . H20B H -0.7542 0.1482 -0.2860 0.172 Uiso 1 1 calc R . . H20C H -0.9723 0.1492 -0.2850 0.172 Uiso 1 1 calc R . . C21 C -0.849(3) 0.2248(16) -0.4323(16) 0.142(10) Uani 1 1 d . . . H21A H -0.8497 0.2806 -0.4076 0.214 Uiso 1 1 calc R . . H21B H -0.9542 0.2218 -0.4622 0.214 Uiso 1 1 calc R . . H21C H -0.7364 0.2198 -0.4608 0.214 Uiso 1 1 calc R . . H100 H -0.72(3) -0.042(13) -0.294(10) 0.11(6) Uiso 1 1 d . . . loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 Pd1 0.0439(6) 0.0346(5) 0.0255(5) -0.0027(4) -0.0058(4) -0.0007(5) O1 0.024(4) 0.085(6) 0.064(5) 0.009(5) -0.013(4) -0.013(4) O2 0.063(6) 0.073(6) 0.082(7) 0.016(6) -0.019(5) 0.006(5) Cl2 0.0406(14) 0.0575(17) 0.0583(17) -0.0134(13) -0.0079(12) 0.0140(12) N1 0.029(4) 0.044(4) 0.033(4) -0.003(3) -0.004(3) 0.002(3) N2 0.066(8) 0.062(7) 0.091(9) 0.003(7) -0.002(7) 0.001(6) C1 0.035(5) 0.045(6) 0.038(5) 0.001(4) -0.009(4) -0.007(4) C2 0.031(5) 0.047(6) 0.036(5) -0.001(4) -0.010(4) 0.000(4) C3 0.033(5) 0.052(6) 0.047(6) -0.002(5) -0.011(4) -0.006(5) C4 0.024(4) 0.057(6) 0.035(5) -0.006(4) -0.003(4) -0.001(4) C5 0.033(5) 0.055(7) 0.035(5) -0.004(4) -0.001(4) -0.006(4) C6 0.036(5) 0.065(7) 0.037(5) -0.001(5) -0.001(4) -0.005(5) C7 0.040(5) 0.044(6) 0.046(6) 0.002(4) -0.016(4) -0.002(4) C8 0.074(9) 0.057(8) 0.056(7) -0.002(6) -0.019(7) 0.006(7) C9 0.099(12) 0.050(8) 0.078(10) 0.005(7) -0.020(9) -0.005(8) C10 0.078(10) 0.056(8) 0.082(10) 0.031(8) -0.012(8) -0.010(7) C11 0.073(9) 0.069(9) 0.048(7) 0.014(6) -0.007(6) -0.004(7) C12 0.069(8) 0.050(7) 0.051(7) 0.000(6) -0.010(6) -0.003(6) C13 0.071(8) 0.050(7) 0.038(6) 0.006(5) -0.021(5) -0.009(6) C14 0.104(12) 0.065(9) 0.058(8) -0.001(7) -0.019(8) -0.029(8) C15 0.17(2) 0.059(10) 0.069(11) -0.005(8) -0.019(13) -0.036(12) C16 0.21(3) 0.051(9) 0.063(10) -0.007(8) -0.028(14) 0.011(13) C17 0.127(16) 0.084(12) 0.070(10) -0.015(9) -0.018(10) 0.039(12) C18 0.078(10) 0.067(9) 0.068(9) -0.009(7) -0.017(8) 0.006(8) C19 0.067(9) 0.072(9) 0.054(8) -0.001(7) -0.002(6) 0.011(7) C20 0.107(16) 0.135(19) 0.101(15) -0.049(14) 0.007(12) -0.012(14) C21 0.127(19) 0.104(17) 0.20(3) 0.075(18) -0.006(18) 0.013(14) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Cl Cl 0.1484 0.1585 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Pd Pd -0.9988 1.0072 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_3 _geom_angle_publ_flag N1 Pd1 N1 180.0(2) 3 . ? N1 Pd1 Cl2 90.8(2) 3 3 ? N1 Pd1 Cl2 89.2(2) . 3 ? N1 Pd1 Cl2 89.2(2) 3 . ? N1 Pd1 Cl2 90.8(2) . . ? Cl2 Pd1 Cl2 180.0(2) 3 . ? C4 N1 C5 119.0(8) . . ? C4 N1 Pd1 120.3(7) . . ? C5 N1 Pd1 120.5(7) . . ? C19 N2 C20 121.2(16) . . ? C19 N2 C21 119.7(18) . . ? C20 N2 C21 119.1(19) . . ? O1 C1 C2 108.0(9) . . ? O1 C1 C7 108.9(9) . . ? C2 C1 C7 109.5(8) . . ? O1 C1 C13 110.8(9) . . ? C2 C1 C13 109.6(8) . . ? C7 C1 C13 110.0(9) . . ? C3 C2 C6 117.2(9) . . ? C3 C2 C1 118.5(9) . . ? C6 C2 C1 124.3(9) . . ? C2 C3 C4 119.4(9) . . ? N1 C4 C3 122.4(10) . . ? N1 C5 C6 120.6(9) . . ? C5 C6 C2 121.2(10) . . ? C12 C7 C8 118.0(11) . . ? C12 C7 C1 124.2(10) . . ? C8 C7 C1 117.4(11) . . ? C7 C8 C9 119.5(13) . . ? C10 C9 C8 121.6(14) . . ? C9 C10 C11 119.8(13) . . ? C10 C11 C12 119.2(13) . . ? C7 C12 C11 121.9(12) . . ? C14 C13 C18 119.6(14) . . ? C14 C13 C1 118.3(13) . . ? C18 C13 C1 122.1(11) . . ? C13 C14 C15 120.3(19) . . ? C16 C15 C14 119.8(19) . . ? C15 C16 C17 120.4(18) . . ? C16 C17 C18 121.0(19) . . ? C13 C18 C17 118.9(16) . . ? O2 C19 N2 126.3(14) . . ? loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_site_symmetry_2 _geom_bond_publ_flag Pd1 N1 2.050(8) 3 ? Pd1 N1 2.050(8) . ? Pd1 Cl2 2.305(3) 3 ? Pd1 Cl2 2.305(3) . ? O1 C1 1.396(13) . ? O2 C19 1.216(17) . ? N1 C4 1.327(12) . ? N1 C5 1.356(13) . ? N2 C19 1.35(2) . ? N2 C20 1.43(2) . ? N2 C21 1.45(2) . ? C1 C2 1.550(13) . ? C1 C7 1.575(15) . ? C1 C13 1.590(17) . ? C2 C3 1.382(15) . ? C2 C6 1.386(14) . ? C3 C4 1.397(14) . ? C5 C6 1.381(14) . ? C7 C12 1.375(17) . ? C7 C8 1.401(17) . ? C8 C9 1.41(2) . ? C9 C10 1.34(2) . ? C10 C11 1.39(2) . ? C11 C12 1.398(18) . ? C13 C14 1.379(19) . ? C13 C18 1.38(2) . ? C14 C15 1.41(2) . ? C15 C16 1.35(3) . ? C16 C17 1.37(3) . ? C17 C18 1.40(2) . ? loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_site_symmetry_A O1 H100 O2 0.94(19) 1.84(19) 2.749(13) 160(17) . loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion _geom_torsion_site_symmetry_1 _geom_torsion_site_symmetry_2 _geom_torsion_site_symmetry_3 _geom_torsion_site_symmetry_4 _geom_torsion_publ_flag C4 N1 N1 C5 4.7(14) . . 3 3 ? O1 C1 C2 C3 15.4(14) . . . . ? O1 C1 C1 O1 180.000(1) . . 3 3 ? C3 C2 C1 O1 15.4(14) . . . . ? C8 C7 C1 O1 68.7(12) . . . . ? C14 C13 C1 O1 6.3(14) . . . . ?