#------------------------------------------------------------------------------
#$Date: 2014-07-12 01:16:09 +0300 (Sat, 12 Jul 2014) $
#$Revision: 120081 $
#$URL: file:///home/coder/svn-repositories/cod/cif/4/30/84/4308400.cif $
#------------------------------------------------------------------------------
#
# This file is available in the Crystallography Open Database (COD),
# http://www.crystallography.net/
#
# All data on this site have been placed in the public domain by the
# contributors.
#
data_4308400
loop_
_publ_author_name
'Alessia Bacchi'
'Elsa Bosetti'
'Mauro Carcelli'
'Paolo Pelagatti'
'Dominga Rogolino'
'Giancarlo Pelizzi'
_publ_section_title
;
"Venetian Blinds" Mechanism of Solvation/Desolvation in Palladium(II)
Wheel-and-Axle Organic-Inorganic Diols
;
_journal_name_full               'Inorganic Chemistry'
_journal_page_first              431
_journal_page_last               442
_journal_volume                  44
_journal_year                    2005
_chemical_formula_sum            'C40 H36 N2 O6 Pd'
_chemical_formula_weight         747.11
_chemical_name_systematic
;
 ?
;
_space_group_IT_number           1
_symmetry_cell_setting           triclinic
_symmetry_space_group_name_Hall  'P 1'
_symmetry_space_group_name_H-M   'P 1'
_atom_sites_solution_hydrogens   geom
_atom_sites_solution_primary     direct
_atom_sites_solution_secondary   difmap
_audit_creation_method           SHELXL-97
_cell_angle_alpha                89.584(4)
_cell_angle_beta                 88.114(4)
_cell_angle_gamma                80.596(3)
_cell_formula_units_Z            1
_cell_length_a                   7.569(2)
_cell_length_b                   9.995(2)
_cell_length_c                   12.394(3)
_cell_measurement_temperature    293(2)
_cell_volume                     924.5(4)
_computing_cell_refinement
;
SAINT: SAX, Area Detector Integration, Siemens Analytical instruments
INC., Madison, Wisconsin, USA. 
;
_computing_data_collection
;
SAINT: SAX, Area Detector Integration, Siemens Analytical instruments
 INC., Madison, Wisconsin, USA. 
;
_computing_data_reduction
;
SAINT: SAX, Area Detector Integration, Siemens Analytical instruments
 INC., Madison, Wisconsin, USA. 
SADABS: Siemens Area Detector Absorption Correction Software, 
Sheldrick G., 1996, University of Goettingen, Germany.
;
_computing_molecular_graphics    'Ortep-3 for Windows (Farrugia, 1997)'
_computing_publication_material
'PARST -  M. Nardelli, J. Appl. Crystallogr. 1995, 28, 659'
_computing_structure_refinement  'SHELXL-97 (Sheldrick, 1997)'
_computing_structure_solution    'SIR97 (Altomare et al., 1997)'
_diffrn_ambient_temperature      293(2)
_diffrn_detector_area_resol_mean 8.2
_diffrn_measured_fraction_theta_full 0.992
_diffrn_measured_fraction_theta_max 0.992
_diffrn_measurement_device_type  'Bruker AXS CCD diffractometer'
_diffrn_measurement_method       '\w scan'
_diffrn_radiation_monochromator  graphite
_diffrn_radiation_source         'fine-focus sealed tube'
_diffrn_radiation_type           MoK\a
_diffrn_radiation_wavelength     0.71069
_diffrn_reflns_av_R_equivalents  0.0373
_diffrn_reflns_av_sigmaI/netI    0.0479
_diffrn_reflns_limit_h_max       6
_diffrn_reflns_limit_h_min       -7
_diffrn_reflns_limit_k_max       9
_diffrn_reflns_limit_k_min       -9
_diffrn_reflns_limit_l_max       9
_diffrn_reflns_limit_l_min       -11
_diffrn_reflns_number            2747
_diffrn_reflns_theta_full        19.79
_diffrn_reflns_theta_max         19.79
_diffrn_reflns_theta_min         1.64
_exptl_absorpt_coefficient_mu    0.549
_exptl_absorpt_correction_T_max  1.00
_exptl_absorpt_correction_T_min  0.731968
_exptl_absorpt_correction_type   'symmetry related measurements'
_exptl_absorpt_process_details   'as implemented in SAINT+/SADABS package'
_exptl_crystal_colour            yellow
_exptl_crystal_density_diffrn    1.342
_exptl_crystal_density_method    'not measured'
_exptl_crystal_description       prism
_exptl_crystal_F_000             384
_exptl_crystal_size_max          .23
_exptl_crystal_size_mid          .10
_exptl_crystal_size_min          .04
_refine_diff_density_max         1.437
_refine_diff_density_min         -1.087
_refine_diff_density_rms         0.189
_refine_ls_abs_structure_details 'Flack H D (1983), Acta Cryst. A39, 876-881'
_refine_ls_abs_structure_Flack   0.64(14)
_refine_ls_extinction_method     none
_refine_ls_goodness_of_fit_ref   1.131
_refine_ls_hydrogen_treatment    mixed
_refine_ls_matrix_type           full
_refine_ls_number_parameters     133
_refine_ls_number_reflns         2123
_refine_ls_number_restraints     35
_refine_ls_restrained_S_all      1.129
_refine_ls_R_factor_all          0.0980
_refine_ls_R_factor_gt           0.0834
_refine_ls_shift/su_max          0.006
_refine_ls_shift/su_mean         0.001
_refine_ls_structure_factor_coef Fsqd
_refine_ls_weighting_details
'calc w=1/[\s^2^(Fo^2^)+(0.1408P)^2^+7.9407P] where P=(Fo^2^+2Fc^2^)/3'
_refine_ls_weighting_scheme      calc
_refine_ls_wR_factor_gt          0.2107
_refine_ls_wR_factor_ref         0.2343
_reflns_number_gt                1934
_reflns_number_total             2123
_reflns_threshold_expression     >2sigma(I)
_[local]_cod_data_source_file    ic048896msi20040811_044420_09.cif
_[local]_cod_data_source_block   10
_cod_database_code               4308400
loop_
_symmetry_equiv_pos_as_xyz
'x, y, z'
loop_
_atom_site_label
_atom_site_type_symbol
_atom_site_fract_x
_atom_site_fract_y
_atom_site_fract_z
_atom_site_U_iso_or_equiv
_atom_site_adp_type
_atom_site_occupancy
_atom_site_symmetry_multiplicity
_atom_site_calc_flag
_atom_site_refinement_flags
_atom_site_disorder_assembly
_atom_site_disorder_group
Pd Pd 0.1000(4) 0.1951(3) 0.2976(3) 0.0340(6) Uani 1 1 d D . .
O1 O -0.713(3) 0.0222(19) 0.4878(16) 0.051(6) Uiso 1 1 d . . .
O2 O 0.037(2) 0.3802(13) 0.3593(12) 0.042(6) Uiso 1 1 d D . .
O3 O 0.180(2) 0.3275(16) 0.5115(13) 0.039(5) Uiso 1 1 d D . .
C1 C -0.547(2) 0.0028(14) 0.5578(10) 0.034(6) Uiso 1 1 d D . .
C2 C -0.3834(11) 0.0431(11) 0.4960(7) 0.023(5) Uiso 1 1 d GD . .
C3 C -0.4059(13) 0.1727(11) 0.4518(10) 0.025(7) Uiso 1 1 d GD . .
H3 H -0.5156 0.2297 0.4598 0.029 Uiso 1 1 calc R . .
C4 C -0.2645(19) 0.2172(10) 0.3955(11) 0.049(9) Uiso 1 1 d GD . .
H4 H -0.2795 0.3039 0.3659 0.059 Uiso 1 1 calc R . .
N1 N -0.1005(15) 0.1320(13) 0.3835(9) 0.027(6) Uiso 1 1 d GD . .
C5 C -0.0780(11) 0.0023(12) 0.4277(11) 0.016(5) Uiso 1 1 d GD . .
H5 H 0.0318 -0.0547 0.4197 0.019 Uiso 1 1 calc R . .
C6 C -0.2194(14) -0.0421(9) 0.4840(10) 0.029(5) Uiso 1 1 d GD . .
H6 H -0.2044 -0.1288 0.5136 0.035 Uiso 1 1 calc R . .
C7 C -0.565(3) 0.043(2) 0.6767(11) 0.065(8) Uiso 1 1 d GD . .
C8 C -0.733(2) 0.052(2) 0.7271(15) 0.067(8) Uiso 1 1 d G . .
H8 H -0.8286 0.0294 0.6895 0.080 Uiso 1 1 calc R . .
C9 C -0.760(3) 0.095(2) 0.8338(16) 0.092(10) Uiso 1 1 d G . .
H9 H -0.8721 0.1006 0.8675 0.110 Uiso 1 1 calc R . .
C10 C -0.617(3) 0.129(2) 0.8901(12) 0.128(15) Uiso 1 1 d G . .
H10 H -0.6348 0.1573 0.9614 0.154 Uiso 1 1 calc R . .
C11 C -0.449(3) 0.120(2) 0.8397(16) 0.121(14) Uiso 1 1 d G . .
H11 H -0.3540 0.1428 0.8773 0.145 Uiso 1 1 calc R . .
C12 C -0.423(2) 0.077(2) 0.7330(16) 0.076(9) Uiso 1 1 d G . .
H12 H -0.3104 0.0715 0.6993 0.091 Uiso 1 1 calc R . .
C13 C -0.539(2) -0.1490(11) 0.5518(13) 0.040(6) Uiso 1 1 d GD . .
C14 C -0.581(2) -0.2036(15) 0.4549(12) 0.044(7) Uiso 1 1 d G . .
H14 H -0.6176 -0.1468 0.3973 0.053 Uiso 1 1 calc R . .
C15 C -0.568(3) -0.3433(16) 0.4439(13) 0.093(11) Uiso 1 1 d G . .
H15 H -0.5954 -0.3798 0.3791 0.112 Uiso 1 1 calc R . .
C16 C -0.513(3) -0.4283(11) 0.5299(17) 0.065(10) Uiso 1 1 d G . .
H16 H -0.5036 -0.5217 0.5226 0.078 Uiso 1 1 calc R . .
C17 C -0.471(3) -0.3737(15) 0.6269(14) 0.090(10) Uiso 1 1 d G . .
H17 H -0.4340 -0.4305 0.6844 0.108 Uiso 1 1 calc R . .
C18 C -0.484(2) -0.2340(16) 0.6378(12) 0.056(7) Uiso 1 1 d G . .
H18 H -0.4562 -0.1975 0.7027 0.068 Uiso 1 1 calc R . .
C19 C 0.084(3) 0.4033(19) 0.4583(17) 0.024(7) Uiso 1 1 d D . .
C20 C 0.003(4) 0.551(2) 0.486(2) 0.068(10) Uiso 1 1 d D . .
H20A H -0.1229 0.5570 0.5022 0.102 Uiso 1 1 calc R . .
H20B H 0.0200 0.6080 0.4247 0.102 Uiso 1 1 calc R . .
H20C H 0.0612 0.5802 0.5467 0.102 Uiso 1 1 calc R . .
O1B O 0.908(2) 0.3335(16) 0.1026(13) 0.024(4) Uiso 1 1 d . . .
O2B O 0.169(2) 0.0228(13) 0.2125(11) 0.034(5) Uiso 1 1 d D . .
O3B O 0.013(3) 0.090(2) 0.0664(17) 0.081(8) Uiso 1 1 d D . .
C1B C 0.745(2) 0.4397(15) 0.0732(9) 0.034(6) Uiso 1 1 d D . .
C2B C 0.5904(14) 0.3767(14) 0.1263(7) 0.040(6) Uiso 1 1 d GD . .
C3B C 0.6038(13) 0.2379(13) 0.1435(11) 0.039(8) Uiso 1 1 d GD . .
H3B H 0.7086 0.1801 0.1234 0.047 Uiso 1 1 calc R . .
C4B C 0.4606(18) 0.1855(10) 0.1908(12) 0.012(6) Uiso 1 1 d GD . .
H4B H 0.4695 0.0927 0.2023 0.014 Uiso 1 1 calc R . .
N1B N 0.3040(14) 0.2720(14) 0.2209(10) 0.026(6) Uiso 1 1 d GD . .
C5B C 0.2906(15) 0.4108(13) 0.2037(14) 0.060(8) Uiso 1 1 d GD . .
H5B H 0.1858 0.4687 0.2239 0.072 Uiso 1 1 calc R . .
C6B C 0.4338(19) 0.4632(10) 0.1565(13) 0.059(7) Uiso 1 1 d GD . .
H6B H 0.4249 0.5561 0.1450 0.071 Uiso 1 1 calc R . .
C7B C 0.751(2) 0.4319(19) -0.0488(10) 0.050(7) Uiso 1 1 d GD . .
C8B C 0.9124(19) 0.403(2) -0.1074(15) 0.075(9) Uiso 1 1 d G . .
H8B H 1.0201 0.3897 -0.0718 0.090 Uiso 1 1 calc R . .
C9B C 0.913(3) 0.393(2) -0.2192(15) 0.090(10) Uiso 1 1 d G . .
H9B H 1.0206 0.3738 -0.2585 0.108 Uiso 1 1 calc R . .
C10B C 0.752(4) 0.413(3) -0.2725(10) 0.139(16) Uiso 1 1 d G . .
H10B H 0.7518 0.4066 -0.3473 0.167 Uiso 1 1 calc R . .
C11B C 0.590(3) 0.442(3) -0.2138(16) 0.139(16) Uiso 1 1 d G . .
H11B H 0.4826 0.4552 -0.2494 0.167 Uiso 1 1 calc R . .
C12B C 0.590(2) 0.452(2) -0.1020(16) 0.068(8) Uiso 1 1 d G . .
H12B H 0.4821 0.4711 -0.0628 0.082 Uiso 1 1 calc R . .
C13B C 0.750(2) 0.5813(11) 0.1182(11) 0.035(6) Uiso 1 1 d GD . .
C14B C 0.781(2) 0.5951(12) 0.2272(11) 0.046(6) Uiso 1 1 d G . .
H14B H 0.7982 0.5191 0.2716 0.055 Uiso 1 1 calc R . .
C15B C 0.787(2) 0.7226(15) 0.2696(10) 0.049(7) Uiso 1 1 d G . .
H15B H 0.8077 0.7319 0.3425 0.059 Uiso 1 1 calc R . .
C16B C 0.762(2) 0.8363(11) 0.2031(13) 0.064(8) Uiso 1 1 d G . .
H16B H 0.7657 0.9216 0.2315 0.077 Uiso 1 1 calc R . .
C17B C 0.731(2) 0.8225(11) 0.0941(12) 0.047(8) Uiso 1 1 d G . .
H17B H 0.7142 0.8985 0.0497 0.056 Uiso 1 1 calc R . .
C18B C 0.725(2) 0.6950(14) 0.0517(10) 0.058(7) Uiso 1 1 d G . .
H18B H 0.7046 0.6857 -0.0212 0.069 Uiso 1 1 calc R . .
C19B C 0.110(4) 0.009(2) 0.1143(18) 0.045(9) Uiso 1 1 d D . .
C20B C 0.180(3) -0.1362(19) 0.0755(19) 0.034(6) Uiso 1 1 d D . .
H20D H 0.1760 -0.1395 -0.0018 0.052 Uiso 1 1 calc R . .
H20E H 0.1069 -0.1971 0.1068 0.052 Uiso 1 1 calc R . .
H20F H 0.3015 -0.1626 0.0970 0.052 Uiso 1 1 calc R . .
H2O H 0.9550 0.2647 0.0831 0.100 Uiso 1 1 d . . .
H1O H -0.7564 0.1185 0.5312 0.100 Uiso 1 1 d . . .
loop_
_atom_site_aniso_label
_atom_site_aniso_U_11
_atom_site_aniso_U_22
_atom_site_aniso_U_33
_atom_site_aniso_U_23
_atom_site_aniso_U_13
_atom_site_aniso_U_12
Pd 0.0260(9) 0.0328(9) 0.0433(11) 0.0080(6) 0.0064(6) -0.0067(6)
loop_
_atom_type_symbol
_atom_type_description
_atom_type_scat_dispersion_real
_atom_type_scat_dispersion_imag
_atom_type_scat_source
C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
Pd Pd -0.9988 1.0072 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
loop_
_geom_angle_atom_site_label_1
_geom_angle_atom_site_label_2
_geom_angle_atom_site_label_3
_geom_angle
_geom_angle_site_symmetry_1
_geom_angle_site_symmetry_3
_geom_angle_publ_flag
O2 Pd N1 91.1(7) . . ?
O2 Pd O2B 170.8(8) . . ?
N1 Pd O2B 95.6(6) . . ?
O2 Pd N1B 84.3(7) . . ?
N1 Pd N1B 174.8(6) . . ?
O2B Pd N1B 89.2(6) . . ?
C19 O2 Pd 119.5(11) . . ?
C13 C1 C7 107.8(13) . . ?
C13 C1 O1 89.5(11) . . ?
C7 C1 O1 120.0(14) . . ?
C13 C1 C2 109.6(12) . . ?
C7 C1 C2 115.1(10) . . ?
O1 C1 C2 111.4(11) . . ?
C3 C2 C6 120.0 . . ?
C3 C2 C1 116.5(10) . . ?
C6 C2 C1 123.5(10) . . ?
C4 C3 C2 120.0 . . ?
C3 C4 N1 120.0 . . ?
C4 N1 C5 120.0 . . ?
C4 N1 Pd 119.5(7) . . ?
C5 N1 Pd 120.4(7) . . ?
C6 C5 N1 120.0 . . ?
C5 C6 C2 120.0 . . ?
C8 C7 C12 120.0 . . ?
C8 C7 C1 117.6(13) . . ?
C12 C7 C1 122.3(13) . . ?
C9 C8 C7 120.0 . . ?
C8 C9 C10 120.0 . . ?
C9 C10 C11 120.0 . . ?
C12 C11 C10 120.0 . . ?
C11 C12 C7 120.0 . . ?
C14 C13 C18 120.0 . . ?
C14 C13 C1 117.9(11) . . ?
C18 C13 C1 122.0(11) . . ?
C13 C14 C15 120.0 . . ?
C16 C15 C14 120.0 . . ?
C17 C16 C15 120.0 . . ?
C16 C17 C18 120.0 . . ?
C17 C18 C13 120.0 . . ?
O3 C19 O2 125.8(14) . . ?
O3 C19 C20 127.1(16) . . ?
O2 C19 C20 106.9(16) . . ?
C19B O2B Pd 122.0(12) . . ?
C7B C1B C13B 114.4(13) . . ?
C7B C1B O1B 102.1(13) . . ?
C13B C1B O1B 113.8(12) . . ?
C7B C1B C2B 113.2(9) . . ?
C13B C1B C2B 111.3(12) . . ?
O1B C1B C2B 100.9(11) . . ?
C3B C2B C6B 120.0 . . ?
C3B C2B C1B 121.9(11) . . ?
C6B C2B C1B 118.1(11) . . ?
C4B C3B C2B 120.0 . . ?
C3B C4B N1B 120.0 . . ?
C5B N1B C4B 120.0 . . ?
C5B N1B Pd 120.3(7) . . ?
C4B N1B Pd 119.6(7) . . ?
N1B C5B C6B 120.0 . . ?
C5B C6B C2B 120.0 . . ?
C8B C7B C12B 120.0 . . ?
C8B C7B C1B 121.5(14) . . ?
C12B C7B C1B 118.5(14) . . ?
C9B C8B C7B 120.0 . . ?
C8B C9B C10B 120.0 . . ?
C9B C10B C11B 120.0 . . ?
C12B C11B C10B 120.0 . . ?
C11B C12B C7B 120.0 . . ?
C14B C13B C18B 120.0 . . ?
C14B C13B C1B 119.0(10) . . ?
C18B C13B C1B 121.0(10) . . ?
C13B C14B C15B 120.0 . . ?
C16B C15B C14B 120.0 . . ?
C17B C16B C15B 120.0 . . ?
C16B C17B C18B 120.0 . . ?
C17B C18B C13B 120.0 . . ?
O3B C19B O2B 126.4(16) . . ?
O3B C19B C20B 125.1(17) . . ?
O2B C19B C20B 108.5(16) . . ?
loop_
_geom_bond_atom_site_label_1
_geom_bond_atom_site_label_2
_geom_bond_distance
_geom_bond_site_symmetry_2
_geom_bond_publ_flag
Pd O2 1.985(11) . ?
Pd N1 2.008(8) . ?
Pd O2B 2.013(10) . ?
Pd N1B 2.039(9) . ?
O1 C1 1.53(3) . ?
O2 C19 1.322(19) . ?
O3 C19 1.18(2) . ?
C1 C13 1.512(13) . ?
C1 C7 1.528(13) . ?
C1 C2 1.540(13) . ?
C2 C3 1.3900 . ?
C2 C6 1.3900 . ?
C3 C4 1.3900 . ?
C4 N1 1.3900 . ?
N1 C5 1.3900 . ?
C5 C6 1.3900 . ?
C7 C8 1.3900 . ?
C7 C12 1.3900 . ?
C8 C9 1.3900 . ?
C9 C10 1.3900 . ?
C10 C11 1.3900 . ?
C11 C12 1.3900 . ?
C13 C14 1.3900 . ?
C13 C18 1.3900 . ?
C14 C15 1.3900 . ?
C15 C16 1.3900 . ?
C16 C17 1.3900 . ?
C17 C18 1.3900 . ?
C19 C20 1.54(2) . ?
O1B C1B 1.54(2) . ?
O2B C19B 1.33(2) . ?
O3B C19B 1.17(2) . ?
C1B C7B 1.514(13) . ?
C1B C13B 1.532(13) . ?
C1B C2B 1.546(13) . ?
C2B C3B 1.3900 . ?
C2B C6B 1.3900 . ?
C3B C4B 1.3900 . ?
C4B N1B 1.3900 . ?
N1B C5B 1.3900 . ?
C5B C6B 1.3900 . ?
C7B C8B 1.3900 . ?
C7B C12B 1.3900 . ?
C8B C9B 1.3900 . ?
C9B C10B 1.3900 . ?
C10B C11B 1.3900 . ?
C11B C12B 1.3900 . ?
C13B C14B 1.3900 . ?
C13B C18B 1.3900 . ?
C14B C15B 1.3900 . ?
C15B C16B 1.3900 . ?
C16B C17B 1.3900 . ?
C17B C18B 1.3900 . ?
C19B C20B 1.53(2) . ?
loop_
_geom_hbond_atom_site_label_D
_geom_hbond_atom_site_label_H
_geom_hbond_atom_site_label_A
_geom_hbond_distance_DH
_geom_hbond_distance_HA
_geom_hbond_distance_DA
_geom_hbond_angle_DHA
_geom_hbond_site_symmetry_A
O1 H1O O3 1.103(17) 2.080(16) 3.04(2) 143.7(12) 1_455
O1B H2O O3B 0.759(15) 1.74(2) 2.47(3) 161.7(15) 1_655
loop_
_geom_torsion_atom_site_label_1
_geom_torsion_atom_site_label_2
_geom_torsion_atom_site_label_3
_geom_torsion_atom_site_label_4
_geom_torsion
_geom_torsion_site_symmetry_1
_geom_torsion_site_symmetry_2
_geom_torsion_site_symmetry_3
_geom_torsion_site_symmetry_4
_geom_torsion_publ_flag
C4 N1 N1B C5B 16.3(9) . . . . ?
O1 C1 C2 C3 54.4(12) . . . . ?
O1B C1B C2B C3B -26.3(10) . . . . ?
O1 C1 C1B O1B -140.7(12) . . . . ?
C3 C2 C1 O1 54.4(12) . . . . ?
C8 C7 C1 O1 22(2) . . . . ?
C14 C13 C1 O1 38.0(14) . . . . ?
C3B C2B C1B O1B -26.3(10) . . . . ?
C8B C7B C1B O1B -32.8(15) . . . . ?
C14B C13B C1B O1B -50.6(16) . . . . ?
_journal_paper_doi 10.1021/ic048896m