#------------------------------------------------------------------------------ #$Date: 2016-03-23 15:42:34 +0200 (Wed, 23 Mar 2016) $ #$Revision: 179343 $ #$URL: file:///home/coder/svn-repositories/cod/cif/4/32/40/4324024.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_4324024 loop_ _publ_author_name 'Donald J. Darensbourg' 'Tara J. Decuir' 'Nicole White Stafford' 'Jeffrey B. Robertson' 'Jennifer D. Draper' 'Joseph H. Reibenspies' 'Agnes Kath\'o' 'Ferenc Jo\'o' _publ_section_title ; Water-Soluble Organometallic Compounds. 6.1Synthesis, Spectral Properties, and Crystal Structures of Complexes of 1,3,5-Triaza-7-phosphaadamantane with Group 10 Metals ; _journal_name_full 'Inorganic Chemistry' _journal_page_first 4218 _journal_page_last 4226 _journal_paper_doi 10.1021/ic970238x _journal_volume 36 _journal_year 1997 _chemical_formula_sum 'C12 H33 Cl2 N6 O6 P2 Pd' _chemical_formula_weight 596.68 _chemical_name_systematic ; ? ; _space_group_IT_number 11 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-P 2yb' _symmetry_space_group_name_H-M 'P 1 21/m 1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL _cell_angle_alpha 90.00 _cell_angle_beta 114.93(4) _cell_angle_gamma 90.00 _cell_formula_units_Z 2 _cell_length_a 12.755(7) _cell_length_b 7.103(3) _cell_length_c 14.877(11) _cell_measurement_temperature 293(2) _cell_volume 1222.3(13) _computing_cell_refinement 'P3VAX (SIEMENS, 1990)' _computing_data_collection 'P3VAX (SIEMENS, 1990)' _computing_data_reduction 'XDISK (SIEMENS, 1990)' _computing_molecular_graphics 'XP (SIEMENS, 1990)' _computing_publication_material 'CIFTAB (Sheldrick, 1993)' _computing_structure_refinement 'SHELXL-93 (Sheldrick, 1993)' _computing_structure_solution 'SHELXS-86 (Sheldrick, 1990)' _diffrn_ambient_temperature 293(2) _diffrn_measurement_device 'Siemens R3M' _diffrn_measurement_method \w _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'normal-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0963 _diffrn_reflns_av_sigmaI/netI 0.0455 _diffrn_reflns_limit_h_max 15 _diffrn_reflns_limit_h_min 0 _diffrn_reflns_limit_k_max 6 _diffrn_reflns_limit_k_min 0 _diffrn_reflns_limit_l_max 16 _diffrn_reflns_limit_l_min -17 _diffrn_reflns_number 2131 _diffrn_reflns_theta_max 25.21 _diffrn_reflns_theta_min 2.76 _diffrn_standards_decay_% <1 _diffrn_standards_interval_count 97 _diffrn_standards_number 3 _exptl_absorpt_coefficient_mu 1.147 _exptl_absorpt_correction_type difabs _exptl_crystal_colour yellow _exptl_crystal_density_diffrn 1.621 _exptl_crystal_description needle _exptl_crystal_F_000 610 _exptl_crystal_size_max 0.4 _exptl_crystal_size_mid 0.05 _exptl_crystal_size_min 0.05 _refine_diff_density_max 3.568 _refine_diff_density_min -3.258 _refine_diff_density_rms 0.294 _refine_ls_extinction_coef 0.0126(71) _refine_ls_extinction_expression Fc^*^=kFc[1+0.001xFc^2^\l^3^/sin(2\q)]^-1/4^ _refine_ls_extinction_method SHELXL _refine_ls_goodness_of_fit_all 1.106 _refine_ls_goodness_of_fit_obs 1.036 _refine_ls_hydrogen_treatment riding _refine_ls_matrix_type full _refine_ls_number_parameters 137 _refine_ls_number_reflns 1974 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.405 _refine_ls_restrained_S_obs 1.036 _refine_ls_R_factor_all 0.1739 _refine_ls_R_factor_obs 0.1228 _refine_ls_shift/esd_max -0.047 _refine_ls_shift/esd_mean 0.004 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'w=1/[\s^2^(Fo^2^)+(0.2582P)^2^+15.3641P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_all 0.5063 _refine_ls_wR_factor_obs 0.3249 _reflns_number_observed 1497 _reflns_number_total 2035 _reflns_observed_criterion >2sigma(I) _cod_data_source_file ic970238x_4.cif _cod_data_source_block complex4 _cod_depositor_comments ; The following automatic conversions were performed: '_refine_ls_weighting_scheme' value 'calc w=1/[\s^2^(Fo^2^)+(0.2582P)^2^+15.3641P] where P=(Fo^2^+2Fc^2^)/3' was changed to 'calc'. New tag '_refine_ls_weighting_details' was created. The value of the new tag was set to 'w=1/[\s^2^(Fo^2^)+(0.2582P)^2^+15.3641P] where P=(Fo^2^+2Fc^2^)/3'. Automatic conversion script Id: cif_fix_values 3143 2015-03-26 13:38:13Z robertas ; _cod_original_cell_volume 1222.3(12) _cod_database_code 4324024 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y+1/2, -z' '-x, -y, -z' 'x, -y-1/2, z' loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 Pd1 0.0388(11) 0.076(2) 0.0429(11) 0.000 0.0182(7) 0.000 Cl1 0.047(3) 0.066(5) 0.047(3) 0.000 0.017(2) 0.000 Cl2 0.047(3) 0.076(5) 0.054(3) 0.000 0.028(2) 0.000 P1 0.039(2) 0.063(4) 0.041(2) 0.000 0.019(2) 0.000 P2 0.044(3) 0.111(6) 0.040(3) 0.000 0.015(2) 0.000 O2 0.097(13) 0.066(12) 0.020(6) 0.000 0.001(7) 0.000 N1 0.047(6) 0.065(10) 0.064(7) 0.000(7) 0.028(6) -0.005(6) N2 0.035(8) 0.027(11) 0.063(10) 0.000 0.006(7) 0.000 N3 0.085(10) 0.103(14) 0.061(8) 0.021(9) 0.038(7) 0.028(10) N4 0.050(11) 0.137(25) 0.057(12) 0.000 0.018(9) 0.000 C1 0.043(6) 0.056(11) 0.050(7) 0.009(7) 0.018(6) 0.013(7) C2 0.053(8) 0.123(19) 0.061(9) 0.000(11) 0.030(7) 0.003(10) C3 0.041(10) 0.090(21) 0.065(13) 0.000 0.024(10) 0.000 C4 0.038(10) 0.102(22) 0.053(11) 0.000 0.018(9) 0.000 C4 0.072(10) 0.093(15) 0.054(8) 0.003(10) 0.023(8) 0.007(11) C5 0.084(13) 0.157(27) 0.059(10) -0.005(14) 0.012(10) 0.032(16) C6 0.045(12) 0.150(31) 0.062(14) 0.000 0.020(11) 0.000 C7 0.064(15) 0.152(34) 0.051(13) 0.000 0.018(12) 0.000 loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_thermal_displace_type _atom_site_occupancy _atom_site_calc_flag _atom_site_refinement_flags _atom_site_disorder_group Pd1 Pd 0.43870(12) 0.2500 0.42088(10) 0.0522(10) Uani 1 d S . Cl1 Cl 0.5806(4) 0.2500 0.5864(4) 0.054(2) Uani 1 d S . Cl2 Cl 0.5850(4) 0.2500 0.3632(4) 0.057(2) Uani 1 d S . P1 P 0.2981(4) 0.2500 0.4722(4) 0.047(2) Uani 1 d S . P2 P 0.3164(5) 0.2500 0.2579(4) 0.066(2) Uani 1 d S . O1 O 0.3638(56) 0.7500 0.0197(47) 0.315(31) Uiso 1 d S . H1C H 0.3955(56) 0.7500 -0.0109(47) 0.473 Uiso 1 d SR . H1D H 0.2823(56) 0.7500 0.0034(47) 0.473 Uiso 1 d SR . O2 O 0.0689(14) 0.7500 0.2098(8) 0.069(5) Uani 1 d S . H2C H 0.0082(14) 0.7500 0.2201(8) 0.010(38) Uiso 1 d SR . O3 O -0.1090(14) 0.4549 0.2103(8) 0.244(15) Uiso 1 d R . H3B H -0.1408(14) 0.4932 0.2470(8) 0.366 Uiso 1 d R . H3C H -0.1603(14) 0.4393 0.1516(8) 0.366 Uiso 1 d R . O4 O 0.3678(33) 0.4380(61) 0.8281(28) 0.284(19) Uiso 1 d . . H4E H 0.3445(33) 0.3598(61) 0.8590(28) 0.426 Uiso 1 d R . H4F H 0.4346(33) 0.4059(61) 0.8340(28) 0.426 Uiso 1 d R . N1 N 0.1141(10) 0.4241(21) 0.4862(9) 0.057(3) Uani 1 d . . N2 N 0.2474(13) 0.2500 0.6301(13) 0.047(4) Uani 1 d S . N3 N 0.2710(13) 0.4218(28) 0.0810(10) 0.081(5) Uani 1 d . . N4 N 0.1114(17) 0.2500 0.0918(16) 0.083(7) Uani 1 d S . C1 C 0.1958(11) 0.4482(25) 0.4415(10) 0.050(4) Uani 1 d . . H1A H 0.2387(11) 0.5644(25) 0.4652(10) 0.075 Uiso 1 d R . H1B H 0.1536(11) 0.4573(25) 0.3701(10) 0.075 Uiso 1 d R . C2 C 0.1748(14) 0.4176(35) 0.5953(12) 0.077(6) Uani 1 d . . H2A H 0.1181(14) 0.4210(35) 0.6228(12) 0.116 Uiso 1 d R . H2B H 0.2232(14) 0.5284(35) 0.6185(12) 0.116 Uiso 1 d R . C3 C 0.3516(18) 0.2500 0.6091(17) 0.065(7) Uani 1 d S . H3A H 0.3978(18) 0.3598 0.6369(17) 0.078 Uiso 0.50 d PR . C4 C 0.0485(17) 0.2500 0.4511(16) 0.064(7) Uani 1 d S . H4A H 0.0147(17) 0.2500 0.3792(16) 0.097 Uiso 1 d SR . H4B H -0.0146(17) 0.2500 0.4713(16) 0.097 Uiso 1 d SR . C4 C 0.3378(15) 0.4459(32) 0.1894(11) 0.074(5) Uani 1 d . . H4C H 0.3139(15) 0.5610(32) 0.2105(11) 0.111 Uiso 1 d R . H4D H 0.4194(15) 0.4569(32) 0.2048(11) 0.111 Uiso 1 d R . C5 C 0.1432(18) 0.4138(44) 0.0523(14) 0.106(9) Uani 1 d . . H5A H 0.1194(18) 0.5254(44) 0.0764(14) 0.159 Uiso 1 d R . H5B H 0.1031(18) 0.4133(44) -0.0194(14) 0.159 Uiso 1 d R . C6 C 0.1535(20) 0.2500 0.1987(18) 0.087(10) Uani 1 d S . H6A H 0.1255(20) 0.3595 0.2195(18) 0.104 Uiso 0.50 d PR . C7 C 0.3022(24) 0.2500 0.0462(19) 0.091(10) Uani 1 d S . H7A H 0.3851(24) 0.2500 0.0660(19) 0.137 Uiso 1 d SR . H7B H 0.2649(24) 0.2500 -0.0257(19) 0.137 Uiso 1 d SR . loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' P P 0.1023 0.0942 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Cl Cl 0.1484 0.1585 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Pd Pd -0.9988 1.0072 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_3 _geom_angle_publ_flag P1 Pd1 P2 94.4(2) . . ? P1 Pd1 Cl2 178.9(2) . . ? P2 Pd1 Cl2 84.5(2) . . ? P1 Pd1 Cl1 90.9(2) . . ? P2 Pd1 Cl1 174.7(2) . . ? Cl2 Pd1 Cl1 90.2(2) . . ? C1 P1 C1 99.8(10) 4_565 . ? C1 P1 C3 99.6(6) 4_565 . ? C1 P1 C3 99.6(6) . . ? C1 P1 Pd1 120.3(5) 4_565 . ? C1 P1 Pd1 120.3(5) . . ? C3 P1 Pd1 113.6(7) . . ? C4 P2 C4 100.4(13) 4_565 . ? C4 P2 C6 97.8(8) 4_565 . ? C4 P2 C6 97.8(8) . . ? C4 P2 Pd1 113.8(6) 4_565 . ? C4 P2 Pd1 113.8(6) . . ? C6 P2 Pd1 128.8(8) . . ? C4 N1 C1 110.4(14) . . ? C4 N1 C2 108.8(15) . . ? C1 N1 C2 111.1(11) . . ? C2 N2 C2 108.9(19) 4_565 . ? C2 N2 C3 114.4(11) 4_565 . ? C2 N2 C3 114.4(11) . . ? C7 N3 C4 111.6(17) . . ? C7 N3 C5 107.2(20) . . ? C4 N3 C5 111.8(14) . . ? C5 N4 C5 108.2(24) 4_565 . ? C5 N4 C6 114.2(13) 4_565 . ? C5 N4 C6 114.2(13) . . ? N1 C1 P1 111.3(11) . . ? N2 C2 N1 112.1(16) . . ? N2 C3 P1 106.4(14) . . ? N1 C4 N1 115.7(16) . 4_565 ? N3 C4 P2 111.7(14) . . ? N4 C5 N3 112.0(19) . . ? N4 C6 P2 109.7(16) . . ? N3 C7 N3 115.1(22) 4_565 . ? loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_site_symmetry_2 _geom_bond_publ_flag Pd1 P1 2.226(5) . ? Pd1 P2 2.264(6) . ? Pd1 Cl2 2.360(5) . ? Pd1 Cl1 2.363(5) . ? P1 C1 1.841(15) 4_565 ? P1 C1 1.841(15) . ? P1 C3 1.85(2) . ? P2 C4 1.81(2) 4_565 ? P2 C4 1.81(2) . ? P2 C6 1.88(2) . ? N1 C4 1.46(2) . ? N1 C1 1.46(2) . ? N1 C2 1.48(2) . ? N2 C2 1.46(2) 4_565 ? N2 C2 1.46(2) . ? N2 C3 1.49(3) . ? N3 C7 1.45(2) . ? N3 C4 1.48(2) . ? N3 C5 1.50(3) . ? N4 C5 1.44(3) 4_565 ? N4 C5 1.44(3) . ? N4 C6 1.45(3) . ? C4 N1 1.46(2) 4_565 ? C7 N3 1.45(2) 4_565 ?