Crystallography Open Database

Information card for entry 7104079

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Coordinates	7104079.cif
Original paper (by DOI)	HTML
External links	ChemSpider

Structure parameters

Common name	1R-(1,2,3,4/5)-1,5-di-O-benzoyl-4-O-tert-Butyldimethylsilyl- 2,3-O-isopropylidene-cyclopentane-1,2,3,4,5-pentol
Chemical name	1R-(1,2,3,4/5)-1,5-di-O-benzoyl-4-O-tert- Butyldimethylsilyl-2,3-O- isopropylidene-cyclopentane-1,2,3,4,5-pentol
Formula	C28 H36 O7 Si
Calculated formula	C28 H36 O7 Si
SMILES	[Si](O[C@H]1[C@H]2OC(O[C@H]2[C@@H](OC(=O)c2ccccc2)[C@@H]1OC(=O)c1ccccc1)(C)C)(C(C)(C)C)(C)C
Title of publication	Cyclopentanes from N-amino-glyconolactams. A synthesis of mannostatin A
Authors of publication	Hu, Guixian; Zimmermann, Martin; Ramana, Chepuri Venkata; Vasella, Andrea
Journal of publication	Chemical Communications (Cambridge, United Kingdom)
Year of publication	2003
Journal issue	8
Pages of publication	952 - 953
a	6.378 ± 0.001 Å
b	19.449 ± 0.005 Å
c	11.752 ± 0.003 Å
α	90°
β	103 ± 0.02°
γ	90°
Cell volume	1420.4 ± 0.6 Å³
Cell temperature	293 ± 2 K
Ambient diffraction temperature	293 ± 2 K
Number of distinct elements	4
Space group number	4
Hermann-Mauguin space group symbol	P 1 21 1
Hall space group symbol	P 2yb
Residual factor for all reflections	0.0863
Residual factor for significantly intense reflections	0.0509
Weighted residual factors for significantly intense reflections	0.1418
Weighted residual factors for all reflections included in the refinement	0.1632
Goodness-of-fit parameter for all reflections included in the refinement	1.285
Diffraction radiation wavelength	1.54184 Å
Diffraction radiation type	CuKα
Has coordinates	Yes
Has disorder	No
Has F_obs	No

Version history

Revision	Date	Message	Files
210625 (current)	2018-09-09	cif/7/ Updating bibliography in entries 7104079, 7113792. Marking entry 7113792 as a duplicate of entry 7104079.	7104079.cif
202017	2017-10-14	cif/ Marking COD entries in range 7 that are known to be related to ChemSpider entries using the _cod_related_entry data loop.	7104079.cif
180143	2016-03-26	cif/7/10/ (antanas@kurmis) Replacing _[local]_cod_* tags with their equivalents from the COD CIF dictionary in multiple entries in subrange 7/10/40.	7104079.cif
106525	2014-03-15	cif/ (saulius@koala.ibt.lt) Adding DOIs to those Chem. Comm. structure descriptions that did not have it before and that could be matched unambiguously. Unambiguously means: a) journal name is "like 'Chem%Com%'" in SQl parlour b) first author's last name is the same in COD and in PubMed b) publication year and first page are the same in COD and in PubMed database. The commands to change these files where: awk '{print $1, $2}' outputs/join-dois.tab \ \| xargs -i sh -c ' CODID=$(echo {} \| awk "{print \$1}"); DOI=$(echo {} \| awk "{print \$2}"); CODFILE=$(echo $CODID \| codid2file); if ! grep -q _journal_paper_doi $CODFILE; then ( set -x; echo _journal_paper_doi $DOI >> $CODFILE ); else echo $CODID already has DOI; fi' Some files that did not had new-line at the end had to be fixed afterwards (in the ~/struct/cod/cif/7 directory, a COD working copy): svn st \ \| awk '{print $2}' \ \| xargs cifparse -q 2> /dev/null \ \| awk -F"'" '{print $2}' \ \| xargs perl -i -pe 's/_journal_paper_doi/\n_journal_paper_doi/' The working copy containing 'outputs/join-dois.tab' was: Path: /home/saulius/struct/xyz-extraction/dois/chem-comm-refetched-from-pubmed URL: svn+ssh://pitonas.ibt.lt/home/xray/svn-repositories/xyz-extraction/dois/chem-comm-refetched-from-pubmed Repository Root: svn+ssh://pitonas.ibt.lt/home/xray/svn-repositories/xyz-extraction Repository UUID: 9acf3947-1f02-0410-ae2a-984b57ad209b Revision: 2871 Node Kind: directory Schedule: normal Last Changed Author: saulius Last Changed Rev: 2871 Last Changed Date: 2014-03-15 11:18:46 +0200 (Sat, 15 Mar 2014) Three conflicts in files 10/81/7108128.cif, 10/81/7108130.cif and 10/99/7109903.cif were resolved manually.	7104079.cif
35909	2012-02-26	cif/7/: reorganising range 7 into a prefix-directory tree.	7104079.cif
20820	2011-06-14	cif/7/ '_chemical_melting_point' value '434.5436' was changed to '435.2(8)' - the average value was taken and precision was estimated.	7104079.cif
966	2010-01-30	cif/ Adding _cod_database_code tags to all COD entries. Adding tag description to the cif_cod.dic dictionary so that COD entries can be validated.	7104079.cif
823	2009-09-25	cif/ Depositing information from the Chem-Comm-2003_01-17 and J-Org-Chem-2007_13-20 publications.	7104079.cif