#------------------------------------------------------------------------------ #$Date: 2014-03-15 13:45:36 +0200 (Sat, 15 Mar 2014) $ #$Revision: 106525 $ #$URL: file:///home/coder/svn-repositories/cod/cif/7/10/48/7104804.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_7104804 loop_ _publ_author_name 'Tsutsui, Shinobu' 'Sakamoto, Kenkichi' _publ_section_title ; Preparation and structures of novel silamacrocyclic compounds: silacalix[4]quinone and silacalix[4]hydroquinone octamethyl ether. ; _journal_issue 18 _journal_name_full 'Chemical communications (Cambridge, England)' _journal_page_first 2322 _journal_page_last 2323 _journal_year 2003 _chemical_formula_sum 'C88 H94 O16 Si8' _chemical_formula_weight 1632.35 _space_group_IT_number 12 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-C 2y' _symmetry_space_group_name_H-M 'C 1 2/m 1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _cell_angle_alpha 90.00 _cell_angle_beta 122.575(3) _cell_angle_gamma 90.00 _cell_formula_units_Z 2 _cell_length_a 24.866(4) _cell_length_b 13.099(2) _cell_length_c 16.060(3) _cell_measurement_reflns_used 3417 _cell_measurement_temperature 123(2) _cell_measurement_theta_max 27.27 _cell_measurement_theta_min 2.55 _cell_volume 4407.9(13) _computing_cell_refinement 'Bruker SMART' _computing_data_collection 'Bruker SMART' _computing_data_reduction 'Bruker SAINT' _computing_molecular_graphics 'Bruker SHELXTL' _computing_publication_material 'Bruker SHELXTL' _computing_structure_refinement 'SHELXL-97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS-97 (Sheldrick, 1990)' _diffrn_ambient_temperature 123(2) _diffrn_detector_area_resol_mean 8.366 _diffrn_measured_fraction_theta_full 0.922 _diffrn_measured_fraction_theta_max 0.922 _diffrn_measurement_device_type 'CCD area detector' _diffrn_measurement_method 'phi and omega scans' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0346 _diffrn_reflns_av_sigmaI/netI 0.0520 _diffrn_reflns_limit_h_max 32 _diffrn_reflns_limit_h_min -31 _diffrn_reflns_limit_k_max 17 _diffrn_reflns_limit_k_min -14 _diffrn_reflns_limit_l_max 18 _diffrn_reflns_limit_l_min -20 _diffrn_reflns_number 13196 _diffrn_reflns_theta_full 28.00 _diffrn_reflns_theta_max 28.00 _diffrn_reflns_theta_min 1.50 _diffrn_standards_decay_% -0.13 _diffrn_standards_number 109 _exptl_absorpt_coefficient_mu 0.185 _exptl_absorpt_correction_T_max 0.9764 _exptl_absorpt_correction_T_min 0.9298 _exptl_absorpt_correction_type empirical _exptl_absorpt_process_details SADABS _exptl_crystal_colour orange _exptl_crystal_density_diffrn 1.230 _exptl_crystal_density_method 'not measured' _exptl_crystal_description plate _exptl_crystal_F_000 1724 _exptl_crystal_size_max 0.40 _exptl_crystal_size_mid 0.15 _exptl_crystal_size_min 0.13 _refine_diff_density_max 0.601 _refine_diff_density_min -0.426 _refine_diff_density_rms 0.071 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.027 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 290 _refine_ls_number_reflns 5135 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.027 _refine_ls_R_factor_all 0.0946 _refine_ls_R_factor_gt 0.0570 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0991P)^2^+2.9113P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.1710 _refine_ls_wR_factor_ref 0.1872 _reflns_number_gt 3185 _reflns_number_total 5135 _reflns_threshold_expression >2sigma(I) _[local]_cod_data_source_file b307048d.txt _[local]_cod_data_source_block tetrasilacalix4quinone_1 _[local]_cod_cif_authors_sg_H-M C2/m _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Monoclinic' changed to 'monoclinic' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_enum 1527 2010-12-29 10:47:43Z saulius ; _cod_database_code 7104804 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y, -z' 'x+1/2, y+1/2, z' '-x+1/2, y+1/2, -z' '-x, -y, -z' 'x, -y, z' '-x+1/2, -y+1/2, -z' 'x+1/2, -y+1/2, z' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_symmetry_multiplicity _atom_site_calc_flag _atom_site_refinement_flags _atom_site_disorder_assembly _atom_site_disorder_group C1 C 0.24607(13) 0.2794(2) 0.2806(2) 0.0250(6) Uani 1 1 d . . . C2 C 0.17508(13) 0.2738(2) 0.2155(2) 0.0259(6) Uani 1 1 d . . . C3 C 0.14931(14) 0.2612(2) 0.1184(2) 0.0310(7) Uani 1 1 d . . . H3 H 0.1042 0.2567 0.0764 0.037 Uiso 1 1 calc R . . C4 C 0.18756(14) 0.2539(2) 0.0736(2) 0.0324(7) Uani 1 1 d . . . C5 C 0.25742(14) 0.2642(2) 0.1390(2) 0.0296(6) Uani 1 1 d . . . H5 H 0.2826 0.2631 0.1109 0.036 Uiso 1 1 calc R . . C6 C 0.28660(13) 0.2751(2) 0.2376(2) 0.0254(6) Uani 1 1 d . . . C7 C 0.14799(17) 0.1675(3) 0.3593(3) 0.0424(8) Uani 1 1 d . . . H7A H 0.1173 0.1627 0.3796 0.064 Uiso 1 1 calc R . . H7B H 0.1911 0.1760 0.4179 0.064 Uiso 1 1 calc R . . H7C H 0.1462 0.1050 0.3244 0.064 Uiso 1 1 calc R . . C8 C 0.04147(15) 0.2803(3) 0.1769(3) 0.0443(8) Uani 1 1 d . . . H8A H 0.0297 0.2145 0.1424 0.066 Uiso 1 1 calc R . . H8B H 0.0330 0.3351 0.1299 0.066 Uiso 1 1 calc R . . H8C H 0.0162 0.2918 0.2065 0.066 Uiso 1 1 calc R . . C9 C 0.1365(2) 0.5000 0.2981(3) 0.0322(9) Uani 1 2 d S . . C10 C 0.14953(14) 0.4004(2) 0.3511(2) 0.0305(7) Uani 1 1 d . . . C11 C 0.17690(15) 0.4034(2) 0.4495(2) 0.0343(7) Uani 1 1 d . . . H11 H 0.1863 0.3408 0.4845 0.041 Uiso 1 1 calc R . . C12 C 0.1931(2) 0.5000 0.5055(3) 0.0373(10) Uani 1 2 d S . . C13 C 0.37786(18) 0.5000 0.3452(3) 0.0266(8) Uani 1 2 d S . . C14 C 0.39712(12) 0.4012(2) 0.3995(2) 0.0251(6) Uani 1 1 d . . . C15 C 0.43039(13) 0.4042(2) 0.4985(2) 0.0285(6) Uani 1 1 d . . . H15 H 0.4425 0.3415 0.5338 0.034 Uiso 1 1 calc R . . C16 C 0.44908(19) 0.5000 0.5549(3) 0.0291(9) Uani 1 2 d S . . C17 C 0.40134(16) 0.1685(2) 0.4125(2) 0.0386(7) Uani 1 1 d . . . H17A H 0.3812 0.1059 0.3752 0.058 Uiso 1 1 calc R . . H17B H 0.3885 0.1803 0.4598 0.058 Uiso 1 1 calc R . . H17C H 0.4478 0.1616 0.4483 0.058 Uiso 1 1 calc R . . C18 C 0.41559(14) 0.2767(3) 0.2564(2) 0.0356(7) Uani 1 1 d . . . H18A H 0.4619 0.2779 0.3032 0.053 Uiso 1 1 calc R . . H18B H 0.4026 0.3367 0.2132 0.053 Uiso 1 1 calc R . . H18C H 0.4035 0.2145 0.2164 0.053 Uiso 1 1 calc R . . C19 C 0.0364(4) 1.0000 -0.0451(5) 0.079(2) Uani 1 2 d S . . C20 C 0.0661(5) 1.0000 0.0561(5) 0.092(3) Uani 1 2 d S . . H20 H 0.1114 1.0000 0.0969 0.110 Uiso 1 2 calc SR . . C21 C 0.0291(4) 1.0000 0.1002(5) 0.085(2) Uani 1 2 d S . . H21 H 0.0508 1.0000 0.1702 0.102 Uiso 1 2 calc SR . . C22 C 0.0759(4) 1.0000 -0.0924(5) 0.098(3) Uani 1 2 d S . . H22A H 0.1117 0.9525 -0.0567 0.147 Uiso 0.50 1 calc PR . . H22B H 0.0922 1.0689 -0.0893 0.147 Uiso 0.50 1 calc PR . . H22C H 0.0489 0.9786 -0.1616 0.147 Uiso 0.50 1 calc PR . . C23 C 0.2084(6) 0.5000 0.8886(7) 0.129(5) Uani 1 2 d S . . C24 C 0.2318(7) 0.5000 0.9869(10) 0.143(6) Uani 1 2 d S . . H24 H 0.2766 0.5000 1.0332 0.171 Uiso 1 2 calc SR . . C25 C 0.1908(7) 0.5000 1.0194(7) 0.147(6) Uani 1 2 d S . . H25 H 0.2075 0.5000 1.0883 0.176 Uiso 1 2 calc SR . . C26 C 0.1231(6) 0.5000 0.9504(6) 0.114(4) Uani 1 2 d S . . C27 C 0.1023(6) 0.5000 0.8523(5) 0.118(4) Uani 1 2 d S . . H27 H 0.0577 0.5000 0.8040 0.142 Uiso 1 2 calc SR . . C28 C 0.1461(6) 0.5000 0.8217(7) 0.114(4) Uani 1 2 d S . . H28 H 0.1309 0.5000 0.7533 0.137 Uiso 1 2 calc SR . . C29 C 0.2560(6) 0.5000 0.8540(9) 0.141(4) Uani 1 2 d S . . H29A H 0.2357 0.4683 0.7885 0.211 Uiso 0.50 1 calc PR . . H29B H 0.2943 0.4613 0.9011 0.211 Uiso 0.50 1 calc PR . . H29C H 0.2679 0.5704 0.8504 0.211 Uiso 0.50 1 calc PR . . C30 C 0.0776(7) 0.5000 0.9865(6) 0.149(5) Uani 1 2 d S . . H30A H 0.0368 0.5303 0.9358 0.224 Uiso 0.50 1 calc PR . . H30B H 0.0961 0.5400 1.0475 0.224 Uiso 0.50 1 calc PR . . H30C H 0.0705 0.4297 0.9993 0.224 Uiso 0.50 1 calc PR . . O1 O 0.27146(9) 0.28711(16) 0.37008(14) 0.0333(5) Uani 1 1 d . . . O2 O 0.16234(11) 0.2375(2) -0.01517(16) 0.0465(6) Uani 1 1 d . . . O3 O 0.11512(19) 0.5000 0.2091(2) 0.0503(9) Uani 1 2 d S . . O4 O 0.21825(18) 0.5000 0.5960(2) 0.0478(9) Uani 1 2 d S . . O5 O 0.34525(15) 0.5000 0.2538(2) 0.0385(7) Uani 1 2 d S . . O6 O 0.47939(16) 0.5000 0.6454(2) 0.0446(8) Uani 1 2 d S . . Si1 Si 0.12777(4) 0.27928(6) 0.27578(6) 0.0298(2) Uani 1 1 d . . . Si2 Si 0.37539(4) 0.27896(6) 0.32535(6) 0.0264(2) Uani 1 1 d . . . loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 C1 0.0298(14) 0.0214(13) 0.0236(15) -0.0012(11) 0.0142(12) -0.0020(11) C2 0.0283(14) 0.0235(14) 0.0266(15) 0.0005(11) 0.0152(12) 0.0005(11) C3 0.0281(15) 0.0343(16) 0.0297(16) -0.0038(13) 0.0149(13) -0.0034(12) C4 0.0342(16) 0.0374(17) 0.0244(16) -0.0050(12) 0.0150(13) -0.0016(13) C5 0.0315(15) 0.0352(16) 0.0267(15) -0.0027(12) 0.0188(13) -0.0017(12) C6 0.0273(14) 0.0252(14) 0.0238(14) -0.0004(11) 0.0137(12) 0.0003(11) C7 0.053(2) 0.0353(18) 0.052(2) 0.0064(15) 0.0368(19) 0.0008(15) C8 0.0362(17) 0.045(2) 0.056(2) -0.0004(17) 0.0282(17) 0.0005(15) C9 0.041(2) 0.032(2) 0.033(2) 0.000 0.026(2) 0.000 C10 0.0377(16) 0.0280(15) 0.0378(17) 0.0019(12) 0.0282(15) 0.0025(12) C11 0.0446(18) 0.0328(16) 0.0354(17) 0.0046(13) 0.0280(16) 0.0033(13) C12 0.041(3) 0.040(3) 0.039(3) 0.000 0.027(2) 0.000 C13 0.024(2) 0.032(2) 0.024(2) 0.000 0.0127(18) 0.000 C14 0.0204(13) 0.0305(15) 0.0236(14) 0.0002(11) 0.0114(12) -0.0003(11) C15 0.0267(14) 0.0331(16) 0.0257(15) 0.0043(12) 0.0140(13) 0.0024(12) C16 0.027(2) 0.037(2) 0.019(2) 0.000 0.0091(18) 0.000 C17 0.0388(18) 0.0354(18) 0.0367(18) 0.0058(14) 0.0171(15) 0.0048(14) C18 0.0323(15) 0.0433(18) 0.0356(17) -0.0095(14) 0.0211(14) -0.0058(14) C19 0.120(6) 0.031(3) 0.038(3) 0.000 0.010(4) 0.000 C20 0.123(7) 0.055(4) 0.047(4) 0.000 0.012(4) 0.000 C21 0.123(7) 0.045(4) 0.040(4) 0.000 0.013(4) 0.000 C22 0.150(8) 0.068(5) 0.055(4) 0.000 0.041(5) 0.000 C23 0.164(10) 0.029(3) 0.065(6) 0.000 -0.023(6) 0.000 C24 0.185(14) 0.048(5) 0.101(10) 0.000 0.016(9) 0.000 C25 0.200(13) 0.032(4) 0.050(5) 0.000 -0.037(7) 0.000 C26 0.194(11) 0.030(3) 0.048(5) 0.000 0.019(6) 0.000 C27 0.186(10) 0.034(4) 0.042(4) 0.000 0.001(5) 0.000 C28 0.202(12) 0.049(4) 0.067(6) 0.000 0.057(8) 0.000 C29 0.182(11) 0.041(5) 0.178(12) 0.000 0.082(10) 0.000 C30 0.255(15) 0.056(5) 0.047(5) 0.000 0.022(7) 0.000 O1 0.0339(11) 0.0438(13) 0.0231(11) 0.0004(9) 0.0160(9) 0.0002(9) O2 0.0379(12) 0.0720(17) 0.0245(12) -0.0117(11) 0.0135(10) -0.0089(12) O3 0.086(3) 0.0352(18) 0.036(2) 0.000 0.037(2) 0.000 O4 0.070(2) 0.047(2) 0.0313(19) 0.000 0.0303(18) 0.000 O5 0.0489(19) 0.0339(17) 0.0216(16) 0.000 0.0117(15) 0.000 O6 0.051(2) 0.047(2) 0.0250(17) 0.000 0.0137(16) 0.000 Si1 0.0338(5) 0.0271(4) 0.0364(5) 0.0009(4) 0.0240(4) -0.0001(3) Si2 0.0253(4) 0.0291(4) 0.0252(4) -0.0011(3) 0.0139(3) -0.0001(3) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Si Si 0.0817 0.0704 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_3 _geom_angle_publ_flag O1 C1 C2 119.6(2) . . ? O1 C1 C6 119.7(2) . . ? C2 C1 C6 120.7(2) . . ? C3 C2 C1 117.8(2) . . ? C3 C2 Si1 124.3(2) . . ? C1 C2 Si1 117.91(19) . . ? C2 C3 C4 123.1(3) . . ? O2 C4 C3 121.2(3) . . ? O2 C4 C5 120.8(3) . . ? C3 C4 C5 118.0(3) . . ? C6 C5 C4 122.0(3) . . ? C5 C6 C1 118.3(2) . . ? C5 C6 Si2 123.9(2) . . ? C1 C6 Si2 117.70(19) . . ? O3 C9 C10 119.21(18) . 6_565 ? O3 C9 C10 119.21(18) . . ? C10 C9 C10 121.6(4) 6_565 . ? C11 C10 C9 117.5(3) . . ? C11 C10 Si1 124.5(2) . . ? C9 C10 Si1 118.0(2) . . ? C10 C11 C12 122.7(3) . . ? O4 C12 C11 121.09(19) . . ? O4 C12 C11 121.09(19) . 6_565 ? C11 C12 C11 117.8(4) . 6_565 ? O5 C13 C14 119.62(17) . 6_565 ? O5 C13 C14 119.62(17) . . ? C14 C13 C14 120.8(3) 6_565 . ? C15 C14 C13 117.9(3) . . ? C15 C14 Si2 123.8(2) . . ? C13 C14 Si2 118.3(2) . . ? C14 C15 C16 123.0(3) . . ? O6 C16 C15 121.33(17) . . ? O6 C16 C15 121.33(17) . 6_565 ? C15 C16 C15 117.3(3) . 6_565 ? C21 C19 C20 117.1(8) 5_575 . ? C21 C19 C22 122.5(7) 5_575 . ? C20 C19 C22 120.5(8) . . ? C19 C20 C21 120.4(8) . . ? C19 C21 C20 122.5(7) 5_575 . ? C28 C23 C24 121.7(15) . . ? C28 C23 C29 119.4(11) . . ? C24 C23 C29 118.9(12) . . ? C23 C24 C25 120.0(14) . . ? C24 C25 C26 120.6(11) . . ? C27 C26 C25 116.8(13) . . ? C27 C26 C30 122.6(11) . . ? C25 C26 C30 120.6(10) . . ? C26 C27 C28 120.9(11) . . ? C23 C28 C27 120.0(11) . . ? C8 Si1 C7 111.11(16) . . ? C8 Si1 C2 108.33(14) . . ? C7 Si1 C2 109.82(13) . . ? C8 Si1 C10 109.97(15) . . ? C7 Si1 C10 109.03(14) . . ? C2 Si1 C10 108.54(12) . . ? C18 Si2 C17 110.89(15) . . ? C18 Si2 C6 110.32(13) . . ? C17 Si2 C6 109.52(14) . . ? C18 Si2 C14 109.10(13) . . ? C17 Si2 C14 108.45(14) . . ? C6 Si2 C14 108.52(12) . . ? loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_site_symmetry_2 _geom_bond_publ_flag C1 O1 1.224(3) . ? C1 C2 1.492(4) . ? C1 C6 1.498(4) . ? C2 C3 1.339(4) . ? C2 Si1 1.885(3) . ? C3 C4 1.472(4) . ? C4 O2 1.229(4) . ? C4 C5 1.475(4) . ? C5 C6 1.347(4) . ? C6 Si2 1.874(3) . ? C7 Si1 1.863(3) . ? C8 Si1 1.859(3) . ? C9 O3 1.228(5) . ? C9 C10 1.494(4) 6_565 ? C9 C10 1.494(4) . ? C10 C11 1.343(4) . ? C10 Si1 1.889(3) . ? C11 C12 1.478(4) . ? C12 O4 1.234(5) . ? C12 C11 1.478(4) 6_565 ? C13 O5 1.237(5) . ? C13 C14 1.489(3) 6_565 ? C13 C14 1.489(3) . ? C14 C15 1.340(4) . ? C14 Si2 1.892(3) . ? C15 C16 1.469(4) . ? C16 O6 1.225(5) . ? C16 C15 1.469(4) 6_565 ? C17 Si2 1.870(3) . ? C18 Si2 1.848(3) . ? C19 C21 1.374(11) 5_575 ? C19 C20 1.376(9) . ? C19 C22 1.530(11) . ? C20 C21 1.431(12) . ? C21 C19 1.374(11) 5_575 ? C23 C28 1.327(14) . ? C23 C24 1.357(15) . ? C23 C29 1.556(15) . ? C24 C25 1.374(17) . ? C25 C26 1.432(16) . ? C26 C27 1.368(11) . ? C26 C30 1.524(15) . ? C27 C28 1.416(14) . ? loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion _geom_torsion_site_symmetry_1 _geom_torsion_site_symmetry_2 _geom_torsion_site_symmetry_3 _geom_torsion_site_symmetry_4 _geom_torsion_publ_flag C13 C14 C15 C16 -0.7(4) . . . . ? C9 C10 C11 C12 1.2(5) . . . . ? C4 C5 C6 C1 -1.5(4) . . . . ? C1 C2 C3 C4 -0.8(4) . . . . ? _journal_paper_doi 10.1039/b918660c