#------------------------------------------------------------------------------ #$Date: 2021-12-07 05:54:57 +0200 (Tue, 07 Dec 2021) $ #$Revision: 271226 $ #$URL: file:///home/coder/svn-repositories/cod/cif/7/15/83/7158389.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_7158389 loop_ _publ_author_name 'Goryaeva, Marina V.' 'Kushch, Svetlana O.' 'Burgart, Yanina V.' 'Ezhikova, Marina A.' 'Kodess, Mikhail I.' 'Slepukhin, Pavel A.' 'Triandafilova, Galina A.' 'Krasnykh, Olga P.' 'Yakovleva, Ekaterina I.' 'Zarubaev, Vladimir V.' 'Sinegubova, Ekaterina O.' 'Esaulkova, Iana L.' 'Shtro, Anna A.' 'Galochkina, Anastasia V.' 'Nikolaeva, Yulia V.' 'Saloutin, Victor I.' _publ_section_title ; New heteroanalogs of tricyclic ascidian alkaloids: synthesis and biological activity. ; _journal_issue 45 _journal_name_full 'Organic & biomolecular chemistry' _journal_page_first 9925 _journal_page_last 9935 _journal_paper_doi 10.1039/d1ob01843d _journal_volume 19 _journal_year 2021 _chemical_formula_moiety 'C13 H20 F3 N O4' _chemical_formula_sum 'C13 H20 F3 N O4' _chemical_formula_weight 311.30 _space_group_IT_number 14 _space_group_name_Hall '-P 2ybc' _space_group_name_H-M_alt 'P 1 21/c 1' _symmetry_cell_setting monoclinic _symmetry_space_group_name_H-M 'P 1 21/c 1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _audit_update_record ; 2021-09-04 deposited with the CCDC. 2021-10-28 downloaded from the CCDC. ; _cell_angle_alpha 90.00 _cell_angle_beta 93.430(14) _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 13.671(2) _cell_length_b 5.8015(8) _cell_length_c 18.074(2) _cell_measurement_reflns_used 1220 _cell_measurement_temperature 295(2) _cell_measurement_theta_max 28.7260 _cell_measurement_theta_min 3.8590 _cell_volume 1430.9(3) _computing_cell_refinement 'CrysAlisPro 1.171.39.38a (Rigaku OD, 2017)' _computing_data_collection 'CrysAlisPro 1.171.39.38a (Rigaku OD, 2017)' _computing_data_reduction 'CrysAlisPro 1.171.39.38a (Rigaku OD, 2017)' _computing_structure_refinement 'SHELXL-97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS-97 (Sheldrick, 1990)' _diffrn_ambient_temperature 295(2) _diffrn_measured_fraction_theta_full 0.994 _diffrn_measured_fraction_theta_max 0.847 _diffrn_measurement_device_type 'Xcalibur 3' _diffrn_measurement_method 'omega scans' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0643 _diffrn_reflns_av_sigmaI/netI 0.0983 _diffrn_reflns_limit_h_max 18 _diffrn_reflns_limit_h_min -18 _diffrn_reflns_limit_k_max 7 _diffrn_reflns_limit_k_min -8 _diffrn_reflns_limit_l_max 14 _diffrn_reflns_limit_l_min -25 _diffrn_reflns_number 9774 _diffrn_reflns_theta_full 26.00 _diffrn_reflns_theta_max 30.93 _diffrn_reflns_theta_min 3.69 _exptl_absorpt_coefficient_mu 0.130 _exptl_absorpt_correction_T_max 1.00000 _exptl_absorpt_correction_T_min 0.15591 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details ; CrysAlisPro 1.171.39.38a (Rigaku Oxford Diffraction, 2017) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm. ; _exptl_crystal_colour colorless _exptl_crystal_density_diffrn 1.445 _exptl_crystal_density_method 'not measured' _exptl_crystal_description block _exptl_crystal_F_000 656 _exptl_crystal_size_max 0.46 _exptl_crystal_size_mid 0.34 _exptl_crystal_size_min 0.14 _refine_diff_density_max 0.307 _refine_diff_density_min -0.245 _refine_diff_density_rms 0.058 _refine_ls_extinction_coef 0.014(3) _refine_ls_extinction_expression Fc^*^=kFc[1+0.001xFc^2^\l^3^/sin(2\q)]^-1/4^ _refine_ls_extinction_method SHELXL _refine_ls_goodness_of_fit_ref 1.002 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 207 _refine_ls_number_reflns 3846 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.002 _refine_ls_R_factor_all 0.1629 _refine_ls_R_factor_gt 0.0703 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0900P)^2^+0.0000P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.1661 _refine_ls_wR_factor_ref 0.2356 _reflns_number_gt 1635 _reflns_number_total 3846 _reflns_threshold_expression >2sigma(I) _cod_data_source_file d1ob01843d2.cif _cod_data_source_block exp_586 _cod_depositor_comments ; The following automatic conversions were performed: data item '_symmetry_cell_setting' value 'Monoclinic' was changed to 'monoclinic' in accordance with the /home/data/users/saulius/crontab/automatic-downloads/rss-feeds/RSC/lib/dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.2 last updated on 2011-04-26. Automatic conversion script Id: cif_fix_values 7556 2019-12-06 15:28:31Z antanas Adding full bibliography for 7158386--7158394.cif. ; _cod_original_cell_volume 1430.9(4) _cod_original_sg_symbol_H-M P2(1)/c _cod_database_code 7158389 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y+1/2, -z+1/2' '-x, -y, -z' 'x, -y-1/2, z-1/2' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_symmetry_multiplicity _atom_site_calc_flag _atom_site_refinement_flags _atom_site_disorder_assembly _atom_site_disorder_group N1 N 0.32627(17) 0.9125(4) 0.18374(13) 0.0380(6) Uani 1 1 d . . . O1 O 0.29997(18) 0.6182(4) 0.02750(13) 0.0530(7) Uani 1 1 d . . . F1 F 0.25125(19) 0.9590(4) -0.09003(11) 0.0820(8) Uani 1 1 d . . . C1 C 0.1939(3) 0.8829(7) -0.0381(2) 0.0648(10) Uani 1 1 d . . . O2 O 0.44156(17) 1.1453(4) 0.14172(13) 0.0617(7) Uani 1 1 d . . . C2 C 0.3663(2) 1.0305(5) 0.12958(17) 0.0424(7) Uani 1 1 d . . . F2 F 0.1464(2) 0.7025(5) -0.06875(12) 0.1039(10) Uani 1 1 d . . . O3 O 0.42375(18) 0.9048(4) 0.42043(12) 0.0588(7) Uani 1 1 d . . . C3 C 0.3199(2) 1.0263(5) 0.05194(16) 0.0463(8) Uani 1 1 d . . . H3A H 0.3716 1.0197 0.0175 0.056 Uiso 1 1 calc R . . H3B H 0.2849 1.1701 0.0431 0.056 Uiso 1 1 calc R . . F3 F 0.1264(2) 1.0477(6) -0.03067(13) 0.1053(10) Uani 1 1 d . . . O4 O 0.27829(17) 0.5236(4) 0.17456(14) 0.0532(6) Uani 1 1 d . . . C4 C 0.2495(2) 0.8287(5) 0.03459(16) 0.0423(7) Uani 1 1 d . . . C5 C 0.1822(2) 0.8058(6) 0.09904(16) 0.0427(7) Uani 1 1 d . . . C6 C 0.0977(3) 0.6323(7) 0.0883(2) 0.0614(10) Uani 1 1 d . . . H6A H 0.0594 0.6675 0.0428 0.074 Uiso 1 1 calc R . . H6B H 0.1243 0.4782 0.0839 0.074 Uiso 1 1 calc R . . C7 C 0.0324(3) 0.6401(8) 0.1528(2) 0.0765(13) Uani 1 1 d . . . H7A H -0.0175 0.5216 0.1463 0.092 Uiso 1 1 calc R . . H7B H -0.0005 0.7883 0.1533 0.092 Uiso 1 1 calc R . . C8 C 0.0892(3) 0.6041(7) 0.2265(2) 0.0700(11) Uani 1 1 d . . . H8A H 0.1138 0.4473 0.2293 0.084 Uiso 1 1 calc R . . H8B H 0.0458 0.6259 0.2665 0.084 Uiso 1 1 calc R . . C9 C 0.1745(2) 0.7716(6) 0.23591(18) 0.0511(8) Uani 1 1 d . . . H9A H 0.1494 0.9276 0.2381 0.061 Uiso 1 1 calc R . . H9B H 0.2113 0.7398 0.2823 0.061 Uiso 1 1 calc R . . C10 C 0.2423(2) 0.7530(5) 0.17245(15) 0.0384(7) Uani 1 1 d . . . C11 C 0.3835(2) 0.9041(5) 0.25633(16) 0.0449(8) Uani 1 1 d . . . H11A H 0.4528 0.9076 0.2476 0.054 Uiso 1 1 calc R . . H11B H 0.3701 0.7592 0.2806 0.054 Uiso 1 1 calc R . . C12 C 0.3606(2) 1.1007(6) 0.30781(17) 0.0479(8) Uani 1 1 d . . . H12A H 0.2942 1.0833 0.3232 0.057 Uiso 1 1 calc R . . H12B H 0.3641 1.2454 0.2812 0.057 Uiso 1 1 calc R . . C13 C 0.4310(3) 1.1080(6) 0.37586(18) 0.0527(9) Uani 1 1 d . . . H13A H 0.4975 1.1225 0.3604 0.063 Uiso 1 1 calc R . . H13B H 0.4169 1.2424 0.4053 0.063 Uiso 1 1 calc R . . H5 H 0.151(2) 0.967(5) 0.1035(15) 0.042(8) Uiso 1 1 d . . . H4 H 0.310(3) 0.516(6) 0.132(2) 0.063(11) Uiso 1 1 d . . . H1 H 0.343(4) 0.618(8) -0.013(3) 0.116(17) Uiso 1 1 d . . . H3 H 0.475(3) 0.780(8) 0.406(2) 0.101(15) Uiso 1 1 d . . . loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 N1 0.0410(13) 0.0411(15) 0.0314(12) 0.0013(10) -0.0008(10) -0.0018(10) O1 0.0709(16) 0.0414(13) 0.0489(14) -0.0047(10) 0.0224(12) -0.0007(10) F1 0.1132(19) 0.0990(18) 0.0329(10) 0.0107(11) -0.0017(12) -0.0167(14) C1 0.074(3) 0.078(3) 0.0405(19) -0.0011(18) -0.0095(19) -0.006(2) O2 0.0584(14) 0.0707(17) 0.0564(15) -0.0057(12) 0.0068(12) -0.0271(12) C2 0.0446(16) 0.0386(17) 0.0440(17) -0.0038(14) 0.0037(14) -0.0041(13) F2 0.119(2) 0.140(2) 0.0497(13) -0.0105(14) -0.0187(13) -0.0609(19) O3 0.0612(15) 0.0739(18) 0.0426(13) 0.0116(11) 0.0158(11) 0.0136(12) C3 0.0617(19) 0.0421(18) 0.0351(16) 0.0003(13) 0.0020(14) -0.0038(14) F3 0.0988(19) 0.151(3) 0.0625(15) 0.0151(16) -0.0228(14) 0.0469(18) O4 0.0655(15) 0.0383(13) 0.0564(15) 0.0072(10) 0.0079(12) 0.0063(10) C4 0.0505(18) 0.0421(18) 0.0343(15) 0.0007(13) 0.0026(13) -0.0018(13) C5 0.0430(16) 0.048(2) 0.0367(16) -0.0028(13) -0.0008(13) 0.0005(13) C6 0.0496(19) 0.080(3) 0.054(2) -0.0108(18) 0.0029(17) -0.0147(18) C7 0.054(2) 0.107(3) 0.070(3) -0.015(2) 0.014(2) -0.025(2) C8 0.064(2) 0.093(3) 0.056(2) -0.001(2) 0.0187(19) -0.018(2) C9 0.0532(18) 0.062(2) 0.0385(17) -0.0004(15) 0.0066(14) -0.0038(15) C10 0.0414(15) 0.0410(17) 0.0334(15) 0.0026(12) 0.0055(12) 0.0014(12) C11 0.0461(17) 0.055(2) 0.0325(15) -0.0006(13) -0.0037(13) 0.0068(14) C12 0.0502(18) 0.053(2) 0.0402(17) -0.0041(14) 0.0003(14) 0.0058(14) C13 0.058(2) 0.060(2) 0.0399(18) -0.0057(15) 0.0007(16) -0.0037(16) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' F F 0.0171 0.0103 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_3 _geom_angle_publ_flag C2 N1 C10 124.6(2) . . ? C2 N1 C11 116.4(2) . . ? C10 N1 C11 117.6(2) . . ? C4 O1 H1 113(3) . . ? F1 C1 F2 105.0(3) . . ? F1 C1 F3 105.7(3) . . ? F2 C1 F3 106.3(3) . . ? F1 C1 C4 113.3(3) . . ? F2 C1 C4 113.9(3) . . ? F3 C1 C4 112.0(3) . . ? O2 C2 N1 121.3(3) . . ? O2 C2 C3 118.4(3) . . ? N1 C2 C3 120.3(3) . . ? C13 O3 H3 111(2) . . ? C2 C3 C4 115.6(2) . . ? C2 C3 H3A 108.4 . . ? C4 C3 H3A 108.4 . . ? C2 C3 H3B 108.4 . . ? C4 C3 H3B 108.4 . . ? H3A C3 H3B 107.4 . . ? C10 O4 H4 102(2) . . ? O1 C4 C1 108.9(3) . . ? O1 C4 C3 111.4(3) . . ? C1 C4 C3 107.6(3) . . ? O1 C4 C5 108.2(2) . . ? C1 C4 C5 112.7(3) . . ? C3 C4 C5 108.1(2) . . ? C6 C5 C4 116.2(3) . . ? C6 C5 C10 109.6(3) . . ? C4 C5 C10 110.9(2) . . ? C6 C5 H5 106.8(16) . . ? C4 C5 H5 104.6(15) . . ? C10 C5 H5 108.3(16) . . ? C7 C6 C5 111.0(3) . . ? C7 C6 H6A 109.4 . . ? C5 C6 H6A 109.4 . . ? C7 C6 H6B 109.4 . . ? C5 C6 H6B 109.4 . . ? H6A C6 H6B 108.0 . . ? C6 C7 C8 112.2(3) . . ? C6 C7 H7A 109.2 . . ? C8 C7 H7A 109.2 . . ? C6 C7 H7B 109.2 . . ? C8 C7 H7B 109.2 . . ? H7A C7 H7B 107.9 . . ? C7 C8 C9 111.1(3) . . ? C7 C8 H8A 109.4 . . ? C9 C8 H8A 109.4 . . ? C7 C8 H8B 109.4 . . ? C9 C8 H8B 109.4 . . ? H8A C8 H8B 108.0 . . ? C10 C9 C8 111.6(3) . . ? C10 C9 H9A 109.3 . . ? C8 C9 H9A 109.3 . . ? C10 C9 H9B 109.3 . . ? C8 C9 H9B 109.3 . . ? H9A C9 H9B 108.0 . . ? O4 C10 N1 108.5(2) . . ? O4 C10 C9 105.8(2) . . ? N1 C10 C9 110.8(2) . . ? O4 C10 C5 111.9(2) . . ? N1 C10 C5 111.3(2) . . ? C9 C10 C5 108.4(2) . . ? N1 C11 C12 113.6(2) . . ? N1 C11 H11A 108.9 . . ? C12 C11 H11A 108.9 . . ? N1 C11 H11B 108.9 . . ? C12 C11 H11B 108.9 . . ? H11A C11 H11B 107.7 . . ? C11 C12 C13 112.0(3) . . ? C11 C12 H12A 109.2 . . ? C13 C12 H12A 109.2 . . ? C11 C12 H12B 109.2 . . ? C13 C12 H12B 109.2 . . ? H12A C12 H12B 107.9 . . ? O3 C13 C12 111.8(3) . . ? O3 C13 H13A 109.3 . . ? C12 C13 H13A 109.3 . . ? O3 C13 H13B 109.3 . . ? C12 C13 H13B 109.3 . . ? H13A C13 H13B 107.9 . . ? loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_site_symmetry_2 _geom_bond_publ_flag N1 C2 1.338(4) . ? N1 C10 1.479(4) . ? N1 C11 1.487(4) . ? O1 C4 1.412(4) . ? O1 H1 0.96(5) . ? F1 C1 1.334(4) . ? C1 F2 1.334(4) . ? C1 F3 1.341(5) . ? C1 C4 1.510(5) . ? O2 C2 1.234(3) . ? C2 C3 1.505(4) . ? O3 C13 1.435(4) . ? O3 H3 1.05(5) . ? C3 C4 1.518(4) . ? C3 H3A 0.9700 . ? C3 H3B 0.9700 . ? O4 C10 1.419(4) . ? O4 H4 0.91(4) . ? C4 C5 1.533(4) . ? C5 C6 1.535(4) . ? C5 C10 1.549(4) . ? C5 H5 1.04(3) . ? C6 C7 1.511(5) . ? C6 H6A 0.9700 . ? C6 H6B 0.9700 . ? C7 C8 1.516(6) . ? C7 H7A 0.9700 . ? C7 H7B 0.9700 . ? C8 C9 1.520(5) . ? C8 H8A 0.9700 . ? C8 H8B 0.9700 . ? C9 C10 1.521(4) . ? C9 H9A 0.9700 . ? C9 H9B 0.9700 . ? C11 C12 1.516(4) . ? C11 H11A 0.9700 . ? C11 H11B 0.9700 . ? C12 C13 1.517(4) . ? C12 H12A 0.9700 . ? C12 H12B 0.9700 . ? C13 H13A 0.9700 . ? C13 H13B 0.9700 . ? loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion _geom_torsion_site_symmetry_1 _geom_torsion_site_symmetry_2 _geom_torsion_site_symmetry_3 _geom_torsion_site_symmetry_4 _geom_torsion_publ_flag C10 N1 C2 O2 -173.7(3) . . . . ? C11 N1 C2 O2 -7.2(4) . . . . ? C10 N1 C2 C3 6.5(4) . . . . ? C11 N1 C2 C3 173.0(2) . . . . ? O2 C2 C3 C4 161.2(3) . . . . ? N1 C2 C3 C4 -19.0(4) . . . . ? F1 C1 C4 O1 -75.5(4) . . . . ? F2 C1 C4 O1 44.3(4) . . . . ? F3 C1 C4 O1 165.0(3) . . . . ? F1 C1 C4 C3 45.3(4) . . . . ? F2 C1 C4 C3 165.2(3) . . . . ? F3 C1 C4 C3 -74.2(4) . . . . ? F1 C1 C4 C5 164.4(3) . . . . ? F2 C1 C4 C5 -75.8(4) . . . . ? F3 C1 C4 C5 44.9(4) . . . . ? C2 C3 C4 O1 -73.4(3) . . . . ? C2 C3 C4 C1 167.3(3) . . . . ? C2 C3 C4 C5 45.4(4) . . . . ? O1 C4 C5 C6 -65.9(3) . . . . ? C1 C4 C5 C6 54.6(4) . . . . ? C3 C4 C5 C6 173.4(3) . . . . ? O1 C4 C5 C10 60.1(3) . . . . ? C1 C4 C5 C10 -179.3(3) . . . . ? C3 C4 C5 C10 -60.6(3) . . . . ? C4 C5 C6 C7 -175.4(3) . . . . ? C10 C5 C6 C7 58.0(4) . . . . ? C5 C6 C7 C8 -54.8(4) . . . . ? C6 C7 C8 C9 53.3(4) . . . . ? C7 C8 C9 C10 -56.2(4) . . . . ? C2 N1 C10 O4 102.0(3) . . . . ? C11 N1 C10 O4 -64.2(3) . . . . ? C2 N1 C10 C9 -142.2(3) . . . . ? C11 N1 C10 C9 51.5(3) . . . . ? C2 N1 C10 C5 -21.6(4) . . . . ? C11 N1 C10 C5 172.2(2) . . . . ? C8 C9 C10 O4 -60.9(3) . . . . ? C8 C9 C10 N1 -178.4(3) . . . . ? C8 C9 C10 C5 59.3(4) . . . . ? C6 C5 C10 O4 56.7(3) . . . . ? C4 C5 C10 O4 -72.9(3) . . . . ? C6 C5 C10 N1 178.3(2) . . . . ? C4 C5 C10 N1 48.7(3) . . . . ? C6 C5 C10 C9 -59.6(3) . . . . ? C4 C5 C10 C9 170.7(2) . . . . ? C2 N1 C11 C12 89.6(3) . . . . ? C10 N1 C11 C12 -103.0(3) . . . . ? N1 C11 C12 C13 -171.0(3) . . . . ? C11 C12 C13 O3 -63.2(3) . . . . ?