#------------------------------------------------------------------------------ #$Date: 2017-06-24 07:36:38 +0300 (Sat, 24 Jun 2017) $ #$Revision: 198134 $ #$URL: file:///home/coder/svn-repositories/cod/cif/7/22/85/7228541.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_7228541 loop_ _publ_author_name 'Jiang, Hui' 'Tian, Yaming' 'Tian, Lumin' 'Li, Jian' _publ_section_title ; A multicomponent bicyclization reaction of isocyanide, allenoate, imine and water to synthesize pyrrolidine-fused rings ; _journal_issue 51 _journal_name_full 'RSC Adv.' _journal_page_first 32300 _journal_paper_doi 10.1039/C7RA05701F _journal_volume 7 _journal_year 2017 _chemical_formula_sum 'C30 H32 N2 O4 S' _chemical_formula_weight 516.64 _chemical_name_systematic ; ? ; _space_group_IT_number 14 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-P 2ybc' _symmetry_space_group_name_H-M 'P 1 21/c 1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _audit_update_record ; 2017-04-14 deposited with the CCDC. 2017-06-14 downloaded from the CCDC. ; _cell_angle_alpha 90.00 _cell_angle_beta 101.240(14) _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 8.337(9) _cell_length_b 26.49(3) _cell_length_c 12.243(14) _cell_measurement_reflns_used 3388 _cell_measurement_temperature 296(2) _cell_measurement_theta_max 22.392 _cell_measurement_theta_min 2.289 _cell_volume 2652(5) _computing_cell_refinement 'Bruker SMART' _computing_data_collection 'Bruker SMART' _computing_data_reduction 'Bruker SAINT' _computing_molecular_graphics 'Bruker SHELXTL' _computing_publication_material 'Bruker SHELXTL' _computing_structure_refinement 'SHELXL-97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS-97 (Sheldrick, 1990)' _diffrn_ambient_temperature 296(2) _diffrn_measured_fraction_theta_full 0.977 _diffrn_measured_fraction_theta_max 0.977 _diffrn_measurement_device_type 'CCD area detector' _diffrn_measurement_method 'phi and omega scans' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0388 _diffrn_reflns_av_sigmaI/netI 0.0537 _diffrn_reflns_limit_h_max 10 _diffrn_reflns_limit_h_min -10 _diffrn_reflns_limit_k_max 28 _diffrn_reflns_limit_k_min -34 _diffrn_reflns_limit_l_max 12 _diffrn_reflns_limit_l_min -15 _diffrn_reflns_number 15548 _diffrn_reflns_theta_full 27.59 _diffrn_reflns_theta_max 27.59 _diffrn_reflns_theta_min 2.29 _exptl_absorpt_coefficient_mu 0.161 _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.294 _exptl_crystal_density_method 'not measured' _exptl_crystal_description block _exptl_crystal_F_000 1096 _exptl_crystal_size_max 0.200 _exptl_crystal_size_mid 0.100 _exptl_crystal_size_min 0.080 _refine_diff_density_max 0.596 _refine_diff_density_min -0.470 _refine_diff_density_rms 0.064 _refine_ls_extinction_coef 0.0068(13) _refine_ls_extinction_expression Fc^*^=kFc[1+0.001xFc^2^\l^3^/sin(2\q)]^-1/4^ _refine_ls_extinction_method SHELXL _refine_ls_goodness_of_fit_ref 1.037 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 337 _refine_ls_number_reflns 5995 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.037 _refine_ls_R_factor_all 0.1318 _refine_ls_R_factor_gt 0.0779 _refine_ls_shift/su_max 0.001 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.1055P)^2^+1.6115P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.1980 _refine_ls_wR_factor_ref 0.2284 _reflns_number_gt 3455 _reflns_number_total 5995 _reflns_threshold_expression >2sigma(I) _cod_data_source_file c7ra05701f2.cif _cod_data_source_block b _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Monoclinic' changed to 'monoclinic' according to /home/data/users/saulius/crontab/automatic-downloads/rss-feeds/RSC/lib/dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.2 from 2011-04-26. Automatic conversion script Id: cif_fix_values 4973 2017-02-22 13:04:09Z antanas ; _cod_original_sg_symbol_H-M P2(1)/c _cod_database_code 7228541 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y+1/2, -z+1/2' '-x, -y, -z' 'x, -y-1/2, z-1/2' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_symmetry_multiplicity _atom_site_calc_flag _atom_site_refinement_flags S1 S 1.03158(12) 0.66053(4) 0.22386(9) 0.0585(3) Uani 1 1 d . C1 C 0.8696(5) 0.69291(13) 0.2643(3) 0.0509(9) Uani 1 1 d . C2 C 0.7254(5) 0.70059(15) 0.1900(3) 0.0625(11) Uani 1 1 d . H2 H 0.7135 0.6890 0.1171 0.075 Uiso 1 1 calc R C3 C 0.5988(5) 0.72544(16) 0.2238(4) 0.0714(12) Uani 1 1 d . H3 H 0.5011 0.7302 0.1733 0.086 Uiso 1 1 calc R C4 C 0.6137(6) 0.74335(15) 0.3307(4) 0.0692(11) Uani 1 1 d . C5 C 0.4730(7) 0.7702(2) 0.3662(5) 0.1071(19) Uani 1 1 d . H5A H 0.5076 0.8031 0.3938 0.161 Uiso 1 1 calc R H5B H 0.4376 0.7511 0.4239 0.161 Uiso 1 1 calc R H5C H 0.3842 0.7733 0.3036 0.161 Uiso 1 1 calc R C6 C 0.7595(6) 0.73537(17) 0.4027(4) 0.0762(13) Uani 1 1 d . H6 H 0.7722 0.7470 0.4756 0.091 Uiso 1 1 calc R C7 C 0.8865(5) 0.71081(15) 0.3701(3) 0.0644(11) Uani 1 1 d . H7 H 0.9846 0.7063 0.4203 0.077 Uiso 1 1 calc R C8 C 1.0261(4) 0.58340(13) 0.3630(3) 0.0491(8) Uani 1 1 d . H8A H 0.9386 0.5971 0.3958 0.059 Uiso 1 1 calc R H8B H 1.1303 0.5929 0.4086 0.059 Uiso 1 1 calc R C9 C 1.0111(4) 0.52550(12) 0.3508(2) 0.0383(7) Uani 1 1 d . H9 H 0.9306 0.5118 0.3914 0.046 Uiso 1 1 calc R C10 C 0.9622(3) 0.51540(12) 0.2245(2) 0.0352(7) Uani 1 1 d . C11 C 0.9103(4) 0.56630(12) 0.1688(2) 0.0401(7) Uani 1 1 d . H11 H 0.9480 0.5676 0.0979 0.048 Uiso 1 1 calc R C12 C 0.7299(4) 0.57762(12) 0.1466(3) 0.0398(7) Uani 1 1 d . C13 C 0.6502(4) 0.58581(14) 0.0384(3) 0.0511(9) Uani 1 1 d . H13 H 0.7079 0.5831 -0.0192 0.061 Uiso 1 1 calc R C14 C 0.4861(5) 0.59803(16) 0.0142(3) 0.0632(11) Uani 1 1 d . H14 H 0.4344 0.6032 -0.0593 0.076 Uiso 1 1 calc R C15 C 0.3995(5) 0.60251(16) 0.0965(4) 0.0651(11) Uani 1 1 d . H15 H 0.2895 0.6114 0.0799 0.078 Uiso 1 1 calc R C16 C 0.4763(5) 0.59383(16) 0.2052(3) 0.0609(10) Uani 1 1 d . H16 H 0.4175 0.5966 0.2621 0.073 Uiso 1 1 calc R C17 C 0.6407(4) 0.58099(14) 0.2302(3) 0.0522(9) Uani 1 1 d . H17 H 0.6910 0.5746 0.3036 0.063 Uiso 1 1 calc R C18 C 1.1237(4) 0.49771(12) 0.1959(2) 0.0389(7) Uani 1 1 d . C19 C 1.1763(4) 0.50150(12) 0.3873(2) 0.0409(7) Uani 1 1 d . C20 C 1.3952(4) 0.46573(15) 0.2954(3) 0.0528(9) Uani 1 1 d . H20A H 1.4695 0.4764 0.3625 0.063 Uiso 1 1 calc R H20B H 1.4369 0.4784 0.2320 0.063 Uiso 1 1 calc R C21 C 1.3908(5) 0.40870(17) 0.2911(4) 0.0688(12) Uani 1 1 d . H21A H 1.3101 0.3989 0.2264 0.083 Uiso 1 1 calc R H21B H 1.4963 0.3971 0.2789 0.083 Uiso 1 1 calc R C22 C 1.3539(7) 0.3811(2) 0.3883(5) 0.1027(19) Uani 1 1 d . H22A H 1.2581 0.3965 0.4084 0.123 Uiso 1 1 calc R H22B H 1.3248 0.3468 0.3653 0.123 Uiso 1 1 calc R C23 C 1.4755(8) 0.3792(4) 0.4830(5) 0.150(3) Uani 1 1 d . H23A H 1.5650 0.3592 0.4682 0.224 Uiso 1 1 calc R H23B H 1.4327 0.3642 0.5427 0.224 Uiso 1 1 calc R H23C H 1.5130 0.4127 0.5036 0.224 Uiso 1 1 calc R C24 C 0.8331(4) 0.47450(13) 0.1869(3) 0.0438(8) Uani 1 1 d . H24A H 0.7347 0.4836 0.2135 0.053 Uiso 1 1 calc R H24B H 0.8063 0.4746 0.1062 0.053 Uiso 1 1 calc R C25 C 0.8797(4) 0.42160(12) 0.2251(3) 0.0418(7) Uani 1 1 d . C26 C 0.9400(5) 0.38823(15) 0.1564(3) 0.0589(10) Uani 1 1 d . H26 H 0.9582 0.3993 0.0877 0.071 Uiso 1 1 calc R C27 C 0.9734(6) 0.33922(18) 0.1878(4) 0.0805(14) Uani 1 1 d . H27 H 1.0143 0.3173 0.1407 0.097 Uiso 1 1 calc R C28 C 0.9467(6) 0.32234(18) 0.2884(5) 0.0872(16) Uani 1 1 d . H28 H 0.9699 0.2890 0.3092 0.105 Uiso 1 1 calc R C29 C 0.8860(6) 0.35422(17) 0.3586(4) 0.0738(13) Uani 1 1 d . H29 H 0.8676 0.3428 0.4269 0.089 Uiso 1 1 calc R C30 C 0.8524(5) 0.40410(14) 0.3259(3) 0.0541(9) Uani 1 1 d . H30 H 0.8108 0.4260 0.3729 0.065 Uiso 1 1 calc R N1 N 1.2329(3) 0.48747(11) 0.2941(2) 0.0408(6) Uani 1 1 d . N2 N 1.0135(3) 0.60098(10) 0.2484(2) 0.0440(7) Uani 1 1 d . O1 O 1.0134(4) 0.66511(11) 0.1056(2) 0.0784(9) Uani 1 1 d . O2 O 1.1765(3) 0.67627(11) 0.2968(3) 0.0839(10) Uani 1 1 d . O3 O 1.2513(3) 0.49699(10) 0.48144(18) 0.0574(7) Uani 1 1 d . O4 O 1.1519(3) 0.49254(10) 0.10471(18) 0.0546(7) Uani 1 1 d . loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 S1 0.0526(6) 0.0493(6) 0.0774(7) 0.0045(5) 0.0220(5) -0.0040(4) C1 0.057(2) 0.0430(19) 0.052(2) 0.0085(16) 0.0084(17) 0.0023(16) C2 0.072(3) 0.057(2) 0.053(2) -0.0002(17) -0.0020(19) 0.008(2) C3 0.065(3) 0.056(2) 0.086(3) -0.003(2) -0.006(2) 0.015(2) C4 0.070(3) 0.052(2) 0.086(3) -0.009(2) 0.017(2) 0.002(2) C5 0.084(4) 0.101(4) 0.143(5) -0.031(4) 0.039(4) 0.015(3) C6 0.089(3) 0.074(3) 0.064(3) -0.013(2) 0.012(2) 0.012(2) C7 0.066(3) 0.058(2) 0.064(3) -0.0070(19) 0.000(2) 0.007(2) C8 0.049(2) 0.054(2) 0.0436(18) -0.0064(15) 0.0063(15) 0.0034(16) C9 0.0367(17) 0.0481(19) 0.0306(15) 0.0012(13) 0.0077(12) 0.0017(13) C10 0.0304(15) 0.0469(18) 0.0291(14) -0.0007(12) 0.0074(11) 0.0035(13) C11 0.0389(17) 0.0487(19) 0.0344(16) 0.0013(13) 0.0116(13) 0.0034(14) C12 0.0374(17) 0.0432(18) 0.0387(16) 0.0027(13) 0.0071(13) 0.0074(13) C13 0.050(2) 0.061(2) 0.0403(18) -0.0018(16) 0.0056(15) 0.0106(17) C14 0.049(2) 0.077(3) 0.058(2) -0.001(2) -0.0054(18) 0.0112(19) C15 0.040(2) 0.076(3) 0.076(3) 0.002(2) 0.0030(19) 0.0100(19) C16 0.044(2) 0.076(3) 0.067(3) 0.006(2) 0.0221(18) 0.0100(18) C17 0.047(2) 0.063(2) 0.049(2) 0.0089(16) 0.0139(16) 0.0119(17) C18 0.0372(17) 0.0504(19) 0.0294(15) -0.0007(13) 0.0074(12) 0.0032(13) C19 0.0410(18) 0.0502(19) 0.0319(16) 0.0011(13) 0.0076(13) 0.0021(14) C20 0.0341(18) 0.077(3) 0.0488(19) 0.0054(18) 0.0106(15) 0.0130(17) C21 0.057(2) 0.078(3) 0.073(3) 0.015(2) 0.017(2) 0.029(2) C22 0.104(4) 0.108(4) 0.103(4) 0.044(3) 0.038(3) 0.043(3) C23 0.095(5) 0.255(10) 0.095(5) 0.060(5) 0.011(4) 0.006(5) C24 0.0363(17) 0.053(2) 0.0403(17) 0.0003(15) 0.0037(13) 0.0026(14) C25 0.0361(17) 0.0439(18) 0.0423(17) -0.0051(14) 0.0002(13) 0.0030(14) C26 0.054(2) 0.063(3) 0.058(2) -0.0182(19) 0.0100(18) 0.0031(19) C27 0.077(3) 0.066(3) 0.094(4) -0.030(3) 0.007(3) 0.015(2) C28 0.092(4) 0.051(3) 0.104(4) -0.009(3) -0.017(3) 0.015(2) C29 0.096(4) 0.058(3) 0.061(3) 0.002(2) 0.002(2) 0.005(2) C30 0.064(2) 0.048(2) 0.048(2) -0.0022(16) 0.0063(17) 0.0034(17) N1 0.0319(14) 0.0558(17) 0.0349(14) 0.0032(11) 0.0072(11) 0.0080(12) N2 0.0453(16) 0.0419(16) 0.0446(15) 0.0022(12) 0.0087(12) -0.0004(12) O1 0.102(2) 0.0709(19) 0.0748(19) 0.0227(15) 0.0495(18) 0.0069(16) O2 0.0481(17) 0.0665(19) 0.133(3) -0.0134(18) 0.0088(17) -0.0129(14) O3 0.0518(15) 0.0884(19) 0.0300(12) 0.0015(11) 0.0028(10) 0.0130(13) O4 0.0507(15) 0.0814(18) 0.0332(12) -0.0006(11) 0.0120(10) 0.0133(12) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' S S 0.1246 0.1234 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle O2 S1 O1 121.4(2) O2 S1 N2 105.57(17) O1 S1 N2 105.95(16) O2 S1 C1 106.7(2) O1 S1 C1 108.02(18) N2 S1 C1 108.69(16) C7 C1 C2 119.6(4) C7 C1 S1 119.9(3) C2 C1 S1 120.6(3) C3 C2 C1 119.7(4) C2 C3 C4 121.4(4) C6 C4 C3 117.6(4) C6 C4 C5 121.9(5) C3 C4 C5 120.5(5) C7 C6 C4 121.7(4) C1 C7 C6 120.1(4) N2 C8 C9 103.5(2) C19 C9 C10 105.8(2) C19 C9 C8 109.8(3) C10 C9 C8 105.7(2) C18 C10 C24 108.2(3) C18 C10 C11 110.6(2) C24 C10 C11 111.5(3) C18 C10 C9 102.1(2) C24 C10 C9 117.1(3) C11 C10 C9 106.8(2) N2 C11 C12 115.2(3) N2 C11 C10 100.1(2) C12 C11 C10 116.1(3) C13 C12 C17 118.3(3) C13 C12 C11 118.8(3) C17 C12 C11 122.8(3) C12 C13 C14 120.9(3) C15 C14 C13 120.7(4) C14 C15 C16 119.3(4) C15 C16 C17 120.5(4) C12 C17 C16 120.3(3) O4 C18 N1 125.0(3) O4 C18 C10 126.3(3) N1 C18 C10 108.7(3) O3 C19 N1 124.8(3) O3 C19 C9 127.0(3) N1 C19 C9 108.1(3) N1 C20 C21 112.1(3) C22 C21 C20 118.2(4) C23 C22 C21 117.3(6) C25 C24 C10 116.2(3) C30 C25 C26 118.3(3) C30 C25 C24 120.9(3) C26 C25 C24 120.7(3) C27 C26 C25 121.0(4) C26 C27 C28 120.3(4) C29 C28 C27 120.5(4) C28 C29 C30 118.9(4) C25 C30 C29 121.1(4) C19 N1 C18 113.3(3) C19 N1 C20 124.4(3) C18 N1 C20 122.3(3) C8 N2 C11 110.9(3) C8 N2 S1 119.8(2) C11 N2 S1 123.0(2) loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance S1 O2 1.418(3) S1 O1 1.431(3) S1 N2 1.619(3) S1 C1 1.751(4) C1 C7 1.361(5) C1 C2 1.375(5) C2 C3 1.374(6) C3 C4 1.375(6) C4 C6 1.372(6) C4 C5 1.506(6) C6 C7 1.368(6) C8 N2 1.463(4) C8 C9 1.544(5) C9 C19 1.503(4) C9 C10 1.543(4) C10 C18 1.529(4) C10 C24 1.533(5) C10 C11 1.535(5) C11 N2 1.486(4) C11 C12 1.506(5) C12 C13 1.378(4) C12 C17 1.381(5) C13 C14 1.381(5) C14 C15 1.354(6) C15 C16 1.378(6) C16 C17 1.387(5) C18 O4 1.193(4) C18 N1 1.386(4) C19 O3 1.205(4) C19 N1 1.369(4) C20 N1 1.468(4) C20 C21 1.512(6) C21 C22 1.479(6) C22 C23 1.384(7) C24 C25 1.504(5) C25 C30 1.379(5) C25 C26 1.380(5) C26 C27 1.367(6) C27 C28 1.368(7) C28 C29 1.370(7) C29 C30 1.393(6)