#------------------------------------------------------------------------------ #$Date: 2011-03-06 04:45:14 +0200 (Sun, 06 Mar 2011) $ #$Revision: 13275 $ #$URL: file:///home/coder/svn-repositories/cod/cif/8/8102536.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_8102536 loop_ _publ_author_name 'Huan-Huan Chen' 'Dao-Cheng Xia' 'Jian-Fang Ma' _publ_section_title ; Crystal structure of aqua[1,3-propanediaminediacetato]cobalt(II) dihydrate, Co(H2O)(C7H12N2O4) · 2H2O ; _journal_issue 4 _journal_name_full 'Zeitschrift f\"ur Kristallographie - New Crystal Structures' _journal_page_first 623 _journal_volume 224 _journal_year 2009 _chemical_formula_moiety 'C14 H28 Co2 N4 O12,2H2 O' _chemical_formula_sum 'C14 H32 Co2 N4 O14' _chemical_formula_weight 598.30 _chemical_melting_point ? _chemical_name_common 'Bis[aqua[1,3-propanediaminediacetato]cobalt(II) ]dihydrate' _chemical_name_systematic ; Bis[aqua[1,3-propanediaminediacetato]cobalt(II) ]dihydrate ; _space_group_IT_number 14 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-P 2yn' _symmetry_space_group_name_H-M 'P 1 21/n 1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _audit_update_record ; 2009-08-14 # Formatted by publCIF ; _cell_angle_alpha 90.000(5) _cell_angle_beta 102.517(5) _cell_angle_gamma 90.000(5) _cell_formula_units_Z 2 _cell_length_a 9.134(5) _cell_length_b 7.704(5) _cell_length_c 16.674(5) _cell_measurement_reflns_used 8271 _cell_measurement_temperature 293(2) _cell_measurement_theta_max 29.190 _cell_measurement_theta_min 3.01 _cell_volume 1145.4(10) _computing_cell_refinement CrysAlis _computing_data_collection 'CrysAlis [4]' _computing_data_reduction CrysAlis _computing_structure_refinement 'SHELXL-97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS-97 [5]' _diffrn_ambient_temperature 293(2) _diffrn_detector_area_resol_mean 10.0 _diffrn_measured_fraction_theta_full 0.992 _diffrn_measured_fraction_theta_max 0.875 _diffrn_measurement_device_type 'Oxford Diffraction Gemini R Ultra' _diffrn_measurement_method '\w scan' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0475 _diffrn_reflns_av_sigmaI/netI 0.0647 _diffrn_reflns_limit_h_max 12 _diffrn_reflns_limit_h_min -11 _diffrn_reflns_limit_k_max 10 _diffrn_reflns_limit_k_min -7 _diffrn_reflns_limit_l_max 22 _diffrn_reflns_limit_l_min -22 _diffrn_reflns_number 7605 _diffrn_reflns_theta_full 25.00 _diffrn_reflns_theta_max 29.19 _diffrn_reflns_theta_min 4.57 _exptl_absorpt_coefficient_mu 1.525 _exptl_absorpt_correction_T_max 0.81 _exptl_absorpt_correction_T_min 0.72 _exptl_absorpt_correction_type empirical _exptl_absorpt_process_details ; Oxford Diffraction: CrysAlis [4]. ; _exptl_crystal_colour red _exptl_crystal_density_diffrn 1.735 _exptl_crystal_density_method 'not measured' _exptl_crystal_description block _exptl_crystal_F_000 620 _exptl_crystal_size_max 0.31 _exptl_crystal_size_mid 0.26 _exptl_crystal_size_min 0.21 _refine_diff_density_max 0.597 _refine_diff_density_min -0.449 _refine_diff_density_rms 0.090 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 0.967 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 178 _refine_ls_number_reflns 2715 _refine_ls_number_restraints 12 _refine_ls_restrained_S_all 0.974 _refine_ls_R_factor_all 0.0726 _refine_ls_R_factor_gt 0.0408 _refine_ls_shift/su_max 0.001 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0499P)^2^+0.0000P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.0864 _refine_ls_wR_factor_ref 0.0943 _reflns_number_gt 1886 _reflns_number_total 2715 _reflns_threshold_expression >2sigma(I) _[local]_cod_data_source_file 1267-2747.cff _[local]_cod_data_source_block 081130-jyy1 _[local]_cod_cif_authors_sg_H-M P2(1)/n _[local]_cod_cif_authors_sg_Hall '-P 2yn ' _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Monoclinic' changed to 'monoclinic' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_enum 1555 2011-01-17 13:19:09Z saulius The following automatic conversions were performed: '_chemical_melting_point' value 'not measured' was changed to '?' - the value is undefined or not given. Automatic conversion script Id: cif_fix_values 1569 2011-02-09 13:29:24Z adriana ; _cod_database_code 8102536 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x+1/2, y+1/2, -z+1/2' '-x, -y, -z' 'x-1/2, -y-1/2, z-1/2' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_symmetry_multiplicity _atom_site_Wyckoff_symbol _atom_site_calc_flag _atom_site_refinement_flags _atom_site_disorder_assembly _atom_site_disorder_group C1 C 1.1105(4) 1.0361(4) 0.2940(2) 0.0307(7) Uani 1 4 e d . . . H1A H 1.1314 1.1445 0.3239 0.037 Uiso 1 4 e calc R . . H1B H 1.0990 1.0611 0.2359 0.037 Uiso 1 4 e calc R . . C2 C 1.2406(4) 0.9133(5) 0.3211(2) 0.0365(8) Uani 1 4 e d . . . H2A H 1.3282 0.9612 0.3050 0.044 Uiso 1 4 e calc R . . H2B H 1.2171 0.8038 0.2925 0.044 Uiso 1 4 e calc R . . C3 C 1.2789(4) 0.8786(4) 0.4131(2) 0.0324(8) Uani 1 4 e d . . . H3A H 1.3675 0.8057 0.4261 0.039 Uiso 1 4 e calc R . . H3B H 1.3029 0.9879 0.4419 0.039 Uiso 1 4 e calc RD . . C4 C 1.1311(4) 0.6088(4) 0.4171(2) 0.0327(8) Uani 1 4 e d . . . H4A H 1.1867 0.5335 0.4596 0.039 Uiso 1 4 e calc R . . H4B H 1.1683 0.5901 0.3675 0.039 Uiso 1 4 e calc R . . C5 C 0.9667(4) 0.5631(4) 0.40103(17) 0.0278(7) Uani 1 4 e d . . . C6 C 0.8397(4) 1.0701(4) 0.27138(18) 0.0286(7) Uani 1 4 e d . . . H6A H 0.7917 1.0222 0.2184 0.034 Uiso 1 4 e calc R . . H6B H 0.8741 1.1862 0.2625 0.034 Uiso 1 4 e calc R . . C7 C 0.7265(3) 1.0798(4) 0.32595(18) 0.0240(6) Uani 1 4 e d . . . O1 O 0.7690(2) 1.0185(2) 0.39858(12) 0.0220(5) Uani 1 4 e d . . . O2 O 0.9250(3) 0.4106(3) 0.39438(15) 0.0389(6) Uani 1 4 e d . . . Co1 Co 0.96362(4) 0.91211(4) 0.42264(2) 0.01735(13) Uani 1 4 e d D . . O3 O 0.8760(2) 0.6919(2) 0.39352(12) 0.0223(5) Uani 1 4 e d . . . O4 O 0.6019(3) 1.1473(3) 0.29965(14) 0.0371(6) Uani 1 4 e d . . . H1WA H 0.608(5) 0.707(5) 0.4868(18) 0.056 Uiso 1 4 e d D . . H3WA H 1.1234(19) 1.123(2) 0.4363(18) 0.056 Uiso 1 4 e d D . . O1W O 0.5977(4) 0.6468(5) 0.4437(2) 0.0778(10) Uani 1 4 e d D . . H1WB H 0.670(5) 0.647(8) 0.420(3) 0.117 Uiso 1 4 e d D . . O2W O 1.0521(5) 0.8383(6) 0.1020(3) 0.0994(13) Uani 1 4 e d D . . H2WA H 0.977(5) 0.908(6) 0.084(5) 0.149 Uiso 1 4 e d D . . H2WB H 1.022(6) 0.733(3) 0.098(3) 0.149 Uiso 1 4 e d D . . O3W O 1.0583(2) 1.1183(2) 0.46688(11) 0.0183(4) Uani 1 4 e d D . . H3WB H 0.998(3) 1.210(3) 0.4434(17) 0.027 Uiso 1 4 e d D . . N1 N 0.9692(3) 0.9614(3) 0.30863(14) 0.0212(6) Uani 1 4 e d . . . H1N H 0.955(4) 0.870(5) 0.288(2) 0.032 Uiso 1 4 e d . . . N2 N 1.1557(3) 0.7930(3) 0.44330(16) 0.0227(6) Uani 1 4 e d . . . H2N H 1.177(4) 0.792(4) 0.494(2) 0.034 Uiso 1 4 e d . . . loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 C1 0.0328(18) 0.0329(18) 0.0276(17) 0.0032(14) 0.0092(14) -0.0053(14) C2 0.0300(18) 0.045(2) 0.0376(19) 0.0009(17) 0.0146(15) 0.0009(16) C3 0.0239(17) 0.0383(19) 0.0334(18) -0.0038(15) 0.0027(14) 0.0058(14) C4 0.043(2) 0.0177(16) 0.0368(19) -0.0016(14) 0.0071(15) 0.0086(14) C5 0.0445(19) 0.0198(16) 0.0152(14) 0.0017(12) -0.0023(13) 0.0063(14) C6 0.0400(19) 0.0260(16) 0.0160(14) 0.0067(13) -0.0019(13) 0.0064(14) C7 0.0297(16) 0.0162(14) 0.0228(15) -0.0023(13) -0.0014(12) 0.0010(13) O1 0.0245(11) 0.0203(10) 0.0191(10) 0.0030(8) -0.0002(8) 0.0045(8) O2 0.0557(16) 0.0118(10) 0.0402(14) 0.0018(10) -0.0090(11) 0.0022(10) Co1 0.0230(2) 0.01193(19) 0.0152(2) -0.00023(16) -0.00013(14) 0.00138(16) O3 0.0298(12) 0.0121(10) 0.0214(11) -0.0011(8) -0.0022(9) 0.0015(8) O4 0.0302(13) 0.0455(14) 0.0322(13) 0.0110(11) -0.0008(10) 0.0146(11) O1W 0.056(2) 0.096(3) 0.092(3) 0.020(2) 0.037(2) 0.0120(19) O2W 0.122(4) 0.086(3) 0.102(3) 0.016(3) 0.048(3) -0.015(3) O3W 0.0254(11) 0.0150(10) 0.0144(10) -0.0008(8) 0.0042(8) 0.0009(8) N1 0.0252(14) 0.0209(12) 0.0162(12) 0.0004(10) 0.0018(10) 0.0022(10) N2 0.0261(14) 0.0215(13) 0.0186(13) -0.0011(11) 0.0008(11) 0.0070(10) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Co Co 0.3494 0.9721 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_3 _geom_angle_publ_flag N1 C1 C2 111.4(3) . . ? N1 C1 H1A 109.4 . . ? C2 C1 H1A 109.4 . . ? N1 C1 H1B 109.4 . . ? C2 C1 H1B 109.4 . . ? H1A C1 H1B 108.0 . . ? C1 C2 C3 114.0(3) . . ? C1 C2 H2A 108.8 . . ? C3 C2 H2A 108.8 . . ? C1 C2 H2B 108.8 . . ? C3 C2 H2B 108.8 . . ? H2A C2 H2B 107.7 . . ? N2 C3 C2 113.2(3) . . ? N2 C3 H3A 108.9 . . ? C2 C3 H3A 108.9 . . ? N2 C3 H3B 108.9 . . ? C2 C3 H3B 108.9 . . ? H3A C3 H3B 107.7 . . ? N2 C4 C5 110.8(3) . . ? N2 C4 H4A 109.5 . . ? C5 C4 H4A 109.5 . . ? N2 C4 H4B 109.5 . . ? C5 C4 H4B 109.5 . . ? H4A C4 H4B 108.1 . . ? O2 C5 O3 123.3(3) . . ? O2 C5 C4 121.0(3) . . ? O3 C5 C4 115.8(3) . . ? N1 C6 C7 111.4(2) . . ? N1 C6 H6A 109.4 . . ? C7 C6 H6A 109.4 . . ? N1 C6 H6B 109.4 . . ? C7 C6 H6B 109.4 . . ? H6A C6 H6B 108.0 . . ? O4 C7 O1 123.8(3) . . ? O4 C7 C6 120.0(3) . . ? O1 C7 C6 116.2(3) . . ? C7 O1 Co1 115.67(19) . . ? O3W Co1 O3 171.84(8) . . ? O3W Co1 O3W 81.99(9) . 3_776 ? O3 Co1 O3W 90.62(9) . 3_776 ? O3W Co1 O1 92.72(9) . . ? O3 Co1 O1 90.48(9) . . ? O3W Co1 O1 88.18(8) 3_776 . ? O3W Co1 N2 90.51(10) . . ? O3 Co1 N2 86.41(10) . . ? O3W Co1 N2 92.89(10) 3_776 . ? O1 Co1 N2 176.72(9) . . ? O3W Co1 N1 96.38(10) . . ? O3 Co1 N1 91.33(10) . . ? O3W Co1 N1 173.96(10) 3_776 . ? O1 Co1 N1 86.08(9) . . ? N2 Co1 N1 92.95(11) . . ? O3W Co1 Co1 41.37(6) . 3_776 ? O3 Co1 Co1 131.14(7) . 3_776 ? O3W Co1 Co1 40.61(6) 3_776 3_776 ? O1 Co1 Co1 90.57(6) . 3_776 ? N2 Co1 Co1 92.26(8) . 3_776 ? N1 Co1 Co1 137.46(8) . 3_776 ? C5 O3 Co1 116.1(2) . . ? H1WA O1W H1WB 117(3) . . ? H2WA O2W H2WB 110(3) . . ? Co1 O3W Co1 98.01(9) . 3_776 ? Co1 O3W H3WA 97.0(15) . . ? Co1 O3W H3WA 143.5(18) 3_776 . ? Co1 O3W H3WB 107.1(19) . . ? Co1 O3W H3WB 108.8(17) 3_776 . ? H3WA O3W H3WB 98.2(19) . . ? C6 N1 C1 111.0(3) . . ? C6 N1 Co1 109.49(18) . . ? C1 N1 Co1 116.37(19) . . ? C6 N1 H1N 107(3) . . ? C1 N1 H1N 110(3) . . ? Co1 N1 H1N 103(3) . . ? C3 N2 C4 113.7(3) . . ? C3 N2 Co1 116.87(19) . . ? C4 N2 Co1 109.01(19) . . ? C3 N2 H2N 109(3) . . ? C4 N2 H2N 106(2) . . ? Co1 N2 H2N 101(3) . . ? loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_site_symmetry_2 _geom_bond_publ_flag C1 N1 1.481(4) . ? C1 C2 1.510(5) . ? C1 H1A 0.9700 . ? C1 H1B 0.9700 . ? C2 C3 1.522(5) . ? C2 H2A 0.9700 . ? C2 H2B 0.9700 . ? C3 N2 1.484(4) . ? C3 H3A 0.9700 . ? C3 H3B 0.9700 . ? C4 N2 1.488(4) . ? C4 C5 1.509(5) . ? C4 H4A 0.9700 . ? C4 H4B 0.9700 . ? C5 O2 1.233(4) . ? C5 O3 1.281(4) . ? C6 N1 1.472(4) . ? C6 C7 1.520(5) . ? C6 H6A 0.9700 . ? C6 H6B 0.9700 . ? C7 O4 1.241(4) . ? C7 O1 1.279(3) . ? O1 Co1 1.919(2) . ? Co1 O3W 1.881(2) . ? Co1 O3 1.893(2) . ? Co1 O3W 1.910(2) 3_776 ? Co1 N2 1.943(3) . ? Co1 N1 1.950(2) . ? Co1 Co1 2.8613(11) 3_776 ? O1W H1WA 0.845(18) . ? O1W H1WB 0.842(19) . ? O2W H2WA 0.87(2) . ? O2W H2WB 0.86(2) . ? O3W Co1 1.910(2) 3_776 ? O3W H3WA 0.864(17) . ? O3W H3WB 0.929(16) . ? N1 H1N 0.78(3) . ? N2 H2N 0.82(3) . ? loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_site_symmetry_A O2W H2WA O1W 0.87(2) 1.98(3) 2.765(6) 149(6) 2_655 O2W H2WB O4 0.86(2) 2.34(3) 2.799(5) 114(3) 2_645 O3W H3WB O2 0.929(16) 1.807(19) 2.716(3) 165(3) 1_565 N1 H1N O4 0.78(3) 2.24(4) 3.005(4) 166(3) 2_645 N2 H2N O1 0.82(3) 2.28(4) 2.958(3) 140(3) 3_776 O1W H1WB O3 0.842(19) 2.05(3) 2.864(4) 162(5) . loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion _geom_torsion_site_symmetry_1 _geom_torsion_site_symmetry_2 _geom_torsion_site_symmetry_3 _geom_torsion_site_symmetry_4 _geom_torsion_publ_flag N1 C1 C2 C3 -64.7(4) . . . . ? C1 C2 C3 N2 62.7(4) . . . . ? N2 C4 C5 O2 -165.7(3) . . . . ? N2 C4 C5 O3 15.5(4) . . . . ? N1 C6 C7 O4 -170.8(3) . . . . ? N1 C6 C7 O1 10.5(4) . . . . ? O4 C7 O1 Co1 177.5(2) . . . . ? C6 C7 O1 Co1 -3.9(3) . . . . ? C7 O1 Co1 O3W 93.73(19) . . . . ? C7 O1 Co1 O3 -93.8(2) . . . . ? C7 O1 Co1 O3W 175.62(19) . . . 3_776 ? C7 O1 Co1 N2 -75.4(18) . . . . ? C7 O1 Co1 N1 -2.5(2) . . . . ? C7 O1 Co1 Co1 135.07(19) . . . 3_776 ? O2 C5 O3 Co1 170.6(2) . . . . ? C4 C5 O3 Co1 -10.7(3) . . . . ? O3W Co1 O3 C5 -65.5(7) . . . . ? O3W Co1 O3 C5 -90.4(2) 3_776 . . . ? O1 Co1 O3 C5 -178.6(2) . . . . ? N2 Co1 O3 C5 2.4(2) . . . . ? N1 Co1 O3 C5 95.3(2) . . . . ? Co1 Co1 O3 C5 -87.4(2) 3_776 . . . ? O3 Co1 O3W Co1 -25.2(7) . . . 3_776 ? O3W Co1 O3W Co1 0.0 3_776 . . 3_776 ? O1 Co1 O3W Co1 87.78(9) . . . 3_776 ? N2 Co1 O3W Co1 -92.84(11) . . . 3_776 ? N1 Co1 O3W Co1 174.14(10) . . . 3_776 ? C7 C6 N1 C1 -141.4(3) . . . . ? C7 C6 N1 Co1 -11.5(3) . . . . ? C2 C1 N1 C6 -171.8(3) . . . . ? C2 C1 N1 Co1 62.1(3) . . . . ? O3W Co1 N1 C6 -84.3(2) . . . . ? O3 Co1 N1 C6 98.4(2) . . . . ? O3W Co1 N1 C6 -10.4(10) 3_776 . . . ? O1 Co1 N1 C6 8.0(2) . . . . ? N2 Co1 N1 C6 -175.1(2) . . . . ? Co1 Co1 N1 C6 -78.6(2) 3_776 . . . ? O3W Co1 N1 C1 42.6(2) . . . . ? O3 Co1 N1 C1 -134.8(2) . . . . ? O3W Co1 N1 C1 116.5(9) 3_776 . . . ? O1 Co1 N1 C1 134.9(2) . . . . ? N2 Co1 N1 C1 -48.3(2) . . . . ? Co1 Co1 N1 C1 48.3(3) 3_776 . . . ? C2 C3 N2 C4 71.0(3) . . . . ? C2 C3 N2 Co1 -57.4(3) . . . . ? C5 C4 N2 C3 -144.9(3) . . . . ? C5 C4 N2 Co1 -12.6(3) . . . . ? O3W Co1 N2 C3 -50.7(2) . . . . ? O3 Co1 N2 C3 136.8(2) . . . . ? O3W Co1 N2 C3 -132.7(2) 3_776 . . . ? O1 Co1 N2 C3 118.4(17) . . . . ? N1 Co1 N2 C3 45.7(2) . . . . ? Co1 Co1 N2 C3 -92.1(2) 3_776 . . . ? O3W Co1 N2 C4 178.7(2) . . . . ? O3 Co1 N2 C4 6.2(2) . . . . ? O3W Co1 N2 C4 96.7(2) 3_776 . . . ? O1 Co1 N2 C4 -12.2(19) . . . . ? N1 Co1 N2 C4 -84.9(2) . . . . ? Co1 Co1 N2 C4 137.32(19) 3_776 . . . ?